-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., Lipman D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0003782165
-
-
Springer-Verlag, New York
-
Balows A., Trüper H.G., Dworkin M., Harder W., Schleifer K.H. 1992. The Prokaryotes. Springer-Verlag, New York
-
(1992)
The Prokaryotes
-
-
Balows, A.1
Trüper, H.G.2
Dworkin, M.3
Harder, W.4
Schleifer, K.H.5
-
4
-
-
0029908204
-
The embAB genes of Mycobacterium avium encode an arabinosyl transferase involved in cell wall arabinan biosynthesis that is the target for the antimycobacterial drug ethambutol
-
Belanger A.E., Besra G.S., Ford M.E., Mikusova K., Belisle J.T., Brennan P.J., Inamine J.M. 1996. The embAB genes of Mycobacterium avium encode an arabinosyl transferase involved in cell wall arabinan biosynthesis that is the target for the antimycobacterial drug ethambutol. Proc Natl Acad Sci USA. 93:11919-11924
-
(1996)
Proc Natl Acad Sci USA.
, vol.93
, pp. 11919-11924
-
-
Belanger, A.E.1
Besra, G.S.2
Ford, M.E.3
Mikusova, K.4
Belisle, J.T.5
Brennan, P.J.6
Inamine, J.M.7
-
5
-
-
0027191394
-
Biology of Frankia Strains, Actinomycete Symbionts of Actinorhizal Plants
-
Benson D.R., Silvester W.B., (1993). Biology of Frankia Strains, Actinomycete Symbionts of Actinorhizal Plants. Microbiol Rev. 57:293-319
-
(1993)
Microbiol Rev.
, vol.57
, pp. 293-319
-
-
Benson, D.R.1
Silvester, W.B.2
-
6
-
-
33745949451
-
Genomics of Actinobacteria, the high G+C Gram-positive bacteria
-
Fraser C.M., Read T.D., Nelson K.E., (eds) Humana Press, Totowa, NJ
-
Bentley S.D., Brosch R., Gordon S.V., Hopwood D.A., Cole S.T., (2004). Genomics of Actinobacteria, the high G+C Gram-positive bacteria. In: Fraser C.M., Read T.D., Nelson K.E., (eds) Microbial Genomes. Humana Press, Totowa, NJ, pp. 333-359
-
(2004)
Microbial Genomes
, pp. 333-359
-
-
Bentley, S.D.1
Brosch, R.2
Gordon, S.V.3
Hopwood, D.A.4
Cole, S.T.5
-
7
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
Bentley S.D., Chater K.F., Cerdeno-Tarraga A.M., Challis G.L., Thomson N.R., James K.D., Harris D.E., Quail M.A., Kieser H., Harper D., Bateman A., Brown S., Chandra G., Chen C.W., Collins M., Cronin A., Fraser A., Goble A., Hidalgo J., Hornsby T., Howarth S., Huang C.H., Kieser T., Larke L., Murphy L., Oliver K., O'Neil S., Rabbinowitsch E., Rajandream M.A., Rutherford K., Rutter S., Seeger K., Saunders D., Sharp S., Squares R., Squares S., Taylor K., Warren T., Wietzorrek A., Woodward J., Barrell B.G., Parkhill J., Hopwood D.A., (2002). Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
Harris, D.E.7
Quail, M.A.8
Kieser, H.9
Harper, D.10
Bateman, A.11
Brown, S.12
Chandra, G.13
Chen, C.W.14
Collins, M.15
Cronin, A.16
Fraser, A.17
Goble, A.18
Hidalgo, J.19
Hornsby, T.20
Howarth, S.21
Huang, C.H.22
Kieser, T.23
Larke, L.24
Murphy, L.25
Oliver, K.26
O'Neil, S.27
Rabbinowitsch, E.28
Rajandream, M.A.29
Rutherford, K.30
Rutter, S.31
Seeger, K.32
Saunders, D.33
Sharp, S.34
Squares, R.35
Squares, S.36
Taylor, K.37
Warren, T.38
Wietzorrek, A.39
Woodward, J.40
Barrell, B.G.41
Parkhill, J.42
Hopwood, D.A.43
more..
-
8
-
-
0037460735
-
Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei
-
Bentley S.D., Maiwald M., Murphy L.D., Pallen M.J., Yeats C.A., Dover L.G., Norbertczak H.T., Besra G.S., Quail M.A., Harris D.E., von Herbay A., Goble A., Rutter S., Squares R., Squares S., Barrell B.G., Parkhill J., Relman D.A., (2003). Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Lancet 361:637-644
-
(2003)
Lancet
, vol.361
, pp. 637-644
-
-
Bentley, S.D.1
Maiwald, M.2
Murphy, L.D.3
Pallen, M.J.4
Yeats, C.A.5
Dover, L.G.6
Norbertczak, H.T.7
Besra, G.S.8
Quail, M.A.9
Harris, D.E.10
von Herbay, A.11
Goble, A.12
Rutter, S.13
Squares, R.14
Squares, S.15
Barrell, B.G.16
Parkhill, J.17
Relman, D.A.18
-
9
-
-
10944235924
-
Comparative genomic structure of prokaryotes
-
Bentley S.D., Parkhill J., (2004). Comparative genomic structure of prokaryotes. Annu. Rev. Genet. 38:771-792
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 771-792
-
-
Bentley, S.D.1
Parkhill, J.2
-
10
-
-
14044270954
-
Roles of conserved proline and glycosyltransferase motifs of embC in biosynthesis of lipoarabinomannan
-
Berg S., Starbuck J., Torrelles J.B., Vissa V.D., Crick D.C., Chatterjee D., Brennan P.J., (2005). Roles of conserved proline and glycosyltransferase motifs of embC in biosynthesis of lipoarabinomannan. J. Biol. Chem. 280:5651-5663
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 5651-5663
-
-
Berg, S.1
Starbuck, J.2
Torrelles, J.B.3
Vissa, V.D.4
Crick, D.C.5
Chatterjee, D.6
Brennan, P.J.7
-
12
-
-
0037844364
-
Structure, function, and biogenesis of the cell wall of Mycobacterium tuberculosis
-
Brennan P.J. (2003). Structure, function, and biogenesis of the cell wall of Mycobacterium tuberculosis. Tuberculosis 83:91-97
-
(2003)
Tuberculosis
, vol.83
, pp. 91-97
-
-
Brennan, P.J.1
-
14
-
-
3442895921
-
The complete genome sequence of Propionibacterium acnes, a commensal of human skin
-
Bruggemann H., Henne A., Hoster F., Liesegang H., Wiezer A., Strittmatter A., Hujer S., Durre P., Gottschalk G., (2004). The complete genome sequence of Propionibacterium acnes, a commensal of human skin. Science 305:671-673
-
(2004)
Science
, vol.305
, pp. 671-673
-
-
Bruggemann, H.1
Henne, A.2
Hoster, F.3
Liesegang, H.4
Wiezer, A.5
Strittmatter, A.6
Hujer, S.7
Durre, P.8
Gottschalk, G.9
-
15
-
-
10744229660
-
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129
-
Cerdeno-Tarraga A.M., Efstratiou A., Dover L.G., Holden M.T.G., Pallen M., Bentley S.D., Besra G.S., Churcher C., James K.D., De Zoysa A., Chillingworth T., Cronin A., Dowd L., Feltwell T., Hamlin N., Holroyd S., Jagels K., Moule S., Quail M.A., Rabbinowitsch E., Rutherford K.M., Thomson N.R., Unwin L., Whitehead S., Barrell B.G., Parkhill J., (2003). The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Nucleic Acids Res. 31:6516-6523
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6516-6523
-
-
Cerdeno-Tarraga, A.M.1
Efstratiou, A.2
Dover, L.G.3
Holden, M.T.G.4
Pallen, M.5
Bentley, S.D.6
Besra, G.S.7
Churcher, C.8
James, K.D.9
De Zoysa, A.10
Chillingworth, T.11
Cronin, A.12
Dowd, L.13
Feltwell, T.14
Hamlin, N.15
Holroyd, S.16
Jagels, K.17
Moule, S.18
Quail, M.A.19
Rabbinowitsch, E.20
Rutherford, K.M.21
Thomson, N.R.22
Unwin, L.23
Whitehead, S.24
Barrell, B.G.25
Parkhill, J.26
more..
-
16
-
-
15944379273
-
Towards a prokaryotic genomic taxonomy
-
Coenye T., Gevers D., de Peer Y.V., Vandamme P., Swings J., (2005). Towards a prokaryotic genomic taxonomy. FEMS Microbiol. Rev. 29:147-167
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 147-167
-
-
Coenye, T.1
Gevers, D.2
de Peer, Y.V.3
Vandamme, P.4
Swings, J.5
-
17
-
-
0036775772
-
Comparative and functional genomics of the Mycobacterium tuberculosis complex
-
Cole S.T. (2002). Comparative and functional genomics of the Mycobacterium tuberculosis complex. Microbiology 148:2919-2928
-
(2002)
Microbiology
, vol.148
, pp. 2919-2928
-
-
Cole, S.T.1
-
18
-
-
84990310256
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
(vol 393, pg 537, 1998)
-
Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D., Gordon S.V., Eiglmeier K., Gas S., Barry C.E., Tekaia F., Badcock K., Basham D., Brown D., Chillingworth T., Conner R., Davies R., Devlin K., Feltwell T., Gentles S., Hamlin N., Holroyd S., Hornsby T., Jagels K., Krogh A., McLean J., Moule S., Murphy L., Oliver K., Osborne J., Quail M.A., Rajandream M.A., Rogers J., Rutter S., Seeger K., Skelton J., Squares R., Squares S., Sulston J.E., Taylor K., Whitehead S., Barrell B.G., (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence (vol 393, pg 537, 1998). Nature 396:190-198
-
(1998)
Nature
, vol.396
, pp. 190-198
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.V.7
Eiglmeier, K.8
Gas, S.9
Barry, C.E.10
Tekaia, F.11
Badcock, K.12
Basham, D.13
Brown, D.14
Chillingworth, T.15
Conner, R.16
Davies, R.17
Devlin, K.18
Feltwell, T.19
Gentles, S.20
Hamlin, N.21
Holroyd, S.22
Hornsby, T.23
Jagels, K.24
Krogh, A.25
McLean, J.26
Moule, S.27
Murphy, L.28
Oliver, K.29
Osborne, J.30
Quail, M.A.31
Rajandream, M.A.32
Rogers, J.33
Rutter, S.34
Seeger, K.35
Skelton, J.36
Squares, R.37
Squares, S.38
Sulston, J.E.39
Taylor, K.40
Whitehead, S.41
Barrell, B.G.42
more..
-
19
-
-
0035931926
-
Massive gene decay in the leprosy bacillus
-
Cole S.T., Eiglmeier K., Parkhill J., James K.D., Thomson N.R., Wheeler P.R., Honore N., Garnier T., Churcher C., Harris D., Mungall K., Basham D., Brown D., Chillingworth T., Connor R., Davies R.M., Devlin K., Duthoy S., Feltwell T., Fraser A., Hamlin N., Holroyd S., Hornsby T., Jagels K., Lacroix C., Maclean J., Moule S., Murphy L., Oliver K., Quail M.A., Rajandream M.A., Rutherford K.M., Rutter S., Seeger K., Simon S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Taylor K., Whitehead S., Woodward J.R., Barrell B.G., (2001). Massive gene decay in the leprosy bacillus. Nature 409:1007-1011
-
(2001)
Nature
, vol.409
, pp. 1007-1011
-
-
Cole, S.T.1
Eiglmeier, K.2
Parkhill, J.3
James, K.D.4
Thomson, N.R.5
Wheeler, P.R.6
Honore, N.7
Garnier, T.8
Churcher, C.9
Harris, D.10
Mungall, K.11
Basham, D.12
Brown, D.13
Chillingworth, T.14
Connor, R.15
Davies, R.M.16
Devlin, K.17
Duthoy, S.18
Feltwell, T.19
Fraser, A.20
Hamlin, N.21
Holroyd, S.22
Hornsby, T.23
Jagels, K.24
Lacroix, C.25
Maclean, J.26
Moule, S.27
Murphy, L.28
Oliver, K.29
Quail, M.A.30
Rajandream, M.A.31
Rutherford, K.M.32
Rutter, S.33
Seeger, K.34
Simon, S.35
Simmonds, M.36
Skelton, J.37
Squares, R.38
Squares, S.39
Stevens, K.40
Taylor, K.41
Whitehead, S.42
Woodward, J.R.43
Barrell, B.G.44
more..
-
20
-
-
0003435153
-
-
Arnold, London
-
Collier L., Balows A., Sussman M., (1998). Topley & Wilson's Microbiology and Microbial Infections, Vol. 2, Systematic Bacteriology. Arnold, London
-
(1998)
Topley & Wilson's Microbiology and Microbial Infections, Vol. 2, Systematic Bacteriology
-
-
Collier, L.1
Balows, A.2
Sussman, M.3
-
21
-
-
0032452982
-
The envelope layers of mycobacteria with reference to their pathogenicity
-
Daffe M., Draper P., (1998). The envelope layers of mycobacteria with reference to their pathogenicity. Adv. Microb. Physiol. 39:131-203
-
(1998)
Adv. Microb. Physiol.
, vol.39
, pp. 131-203
-
-
Daffe, M.1
Draper, P.2
-
22
-
-
3042569657
-
Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli
-
Daubin V., Ochman H., (2004). Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli. Genome Res. 14:1036-1042
-
(2004)
Genome Res.
, vol.14
, pp. 1036-1042
-
-
Daubin, V.1
Ochman, H.2
-
24
-
-
0028126653
-
The molecular phylogeny and systematics of the actinomycetes
-
Embley T.M., Stackebrandt E., (1994). The molecular phylogeny and systematics of the actinomycetes. Annu. Rev. Microbiol. 48:257-289
-
(1994)
Annu. Rev. Microbiol.
, vol.48
, pp. 257-289
-
-
Embley, T.M.1
Stackebrandt, E.2
-
25
-
-
0036777599
-
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
-
Fleischmann R.D., Alland D., Eisen J.A., Carpenter L., White O., Peterson J., Deboy R., Dodson R., Gwinn M., Haft D., Hickey E., Kolonay J.F., Nelson W.C., Umayam L.A., Ermolaeva M., Salzberg S.L., Delcher A., Utterback T., Weidman J., Khouri H., Gill J., Mikula A., Bishai W., Jacobs W.R., Venter J.C., Fraser C.M., (2002). Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J. Bacteriol. 184:5479-5490
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5479-5490
-
-
Fleischmann, R.D.1
Alland, D.2
Eisen, J.A.3
Carpenter, L.4
White, O.5
Peterson, J.6
Deboy, R.7
Dodson, R.8
Gwinn, M.9
Haft, D.10
Hickey, E.11
Kolonay, J.F.12
Nelson, W.C.13
Umayam, L.A.14
Ermolaeva, M.15
Salzberg, S.L.16
Delcher, A.17
Utterback, T.18
Weidman, J.19
Khouri, H.20
Gill, J.21
Mikula, A.22
Bishai, W.23
Jacobs, W.R.24
Venter, J.C.25
Fraser, C.M.26
more..
-
27
-
-
27844604206
-
Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
-
Gao B., Gupta R.S., (2005). Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int. J. Syst. Evol. Microbiol. 151:2647-2657
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.151
, pp. 2647-2657
-
-
Gao, B.1
Gupta, R.S.2
-
28
-
-
0037596510
-
The complete genome sequence of Mycobacterium bovis
-
Garnier T., Eiglmeier K., Camus J.C., Medina N., Mansoor H., Pryor M., Duthoy S., Grondin S., Lacroix C., Monsempe C., Simon S., Harris B., Atkin R., Doggett J., Mayes R., Keating L., Wheeler P.R., Parkhill J., Barrell B.G., Cole S.T., Gordon S.V., Hewinson R.G., (2003). The complete genome sequence of Mycobacterium bovis. Proc. Natl. Acad. Sci. USA 100:7877-7882
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7877-7882
-
-
Garnier, T.1
Eiglmeier, K.2
Camus, J.C.3
Medina, N.4
Mansoor, H.5
Pryor, M.6
Duthoy, S.7
Grondin, S.8
Lacroix, C.9
Monsempe, C.10
Simon, S.11
Harris, B.12
Atkin, R.13
Doggett, J.14
Mayes, R.15
Keating, L.16
Wheeler, P.R.17
Parkhill, J.18
Barrell, B.G.19
Cole, S.T.20
Gordon, S.V.21
Hewinson, R.G.22
more..
-
29
-
-
0000685441
-
The road map to the manual
-
Boone D.R., Castenholz R.W. (eds) Springer-Verlag, Berlin
-
Garrity G.M., Holt J.G., (2001). The road map to the manual. In: Boone D.R., Castenholz R.W. (eds) Bergey's Manual of Systematic Bacteriology. Springer-Verlag, Berlin, pp. 119-166
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 119-166
-
-
Garrity, G.M.1
Holt, J.G.2
-
30
-
-
23944499633
-
Horizontal gene transfer, genome innovation and evolution
-
Gogarten J.P., Townsend J.P., (2005). Horizontal gene transfer, genome innovation and evolution. Nat. Rev. Microbiol. 3:679-687
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 679-687
-
-
Gogarten, J.P.1
Townsend, J.P.2
-
32
-
-
0034981706
-
Genomics of Mycobacterium bovis
-
Gordon S.V., Eiglmeier K., Garnier T., Brosch R., Parkhill J., Barrell B., Cole S.T., Hewinson R.G., (2001). Genomics of Mycobacterium bovis. Tuberculosis 81:157-163
-
(2001)
Tuberculosis
, vol.81
, pp. 157-163
-
-
Gordon, S.V.1
Eiglmeier, K.2
Garnier, T.3
Brosch, R.4
Parkhill, J.5
Barrell, B.6
Cole, S.T.7
Hewinson, R.G.8
-
33
-
-
2542452389
-
Signature sequences in diverse proteins provide evidence for the late divergence of the order Aquificales
-
Griffiths E., Gupta R.S., (2004). Signature sequences in diverse proteins provide evidence for the late divergence of the order Aquificales. Intl Microbiol. 7:41-52
-
(2004)
Intl Microbiol.
, vol.7
, pp. 41-52
-
-
Griffiths, E.1
Gupta, R.S.2
-
34
-
-
23844479263
-
Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification
-
Griffiths E., Petrich A., Gupta R.S., (2005). Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification. Microbiology 151:2647-2657
-
(2005)
Microbiology
, vol.151
, pp. 2647-2657
-
-
Griffiths, E.1
Petrich, A.2
Gupta, R.S.3
-
35
-
-
33645017409
-
BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species
-
Griffiths E., Ventresca M.S., Gupta R.S. 2006. BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species. BMC Genomics 7:14
-
(2006)
BMC Genomics
, vol.7
, pp. 14
-
-
Griffiths, E.1
Ventresca, M.S.2
Gupta, R.S.3
-
36
-
-
0031794743
-
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
-
Gupta R.S. (1998). Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol. Mol. Biol. Rev. 62:1435-1491
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
37
-
-
0033823160
-
The phylogeny of Proteobacteria: Relationships to other eubacterial phyla and eukaryotes
-
Gupta R.S. (2000). The phylogeny of Proteobacteria: Relationships to other eubacterial phyla and eukaryotes. FEMS Microbiol. Rev. 24:367-402
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 367-402
-
-
Gupta, R.S.1
-
38
-
-
2542465712
-
The Phylogeny and Signature Sequences characteristics of Fibrobacters, Chlorobi and Bacteroidetes
-
Gupta R.S. (2004). The Phylogeny and Signature Sequences characteristics of Fibrobacters, Chlorobi and Bacteroidetes. Crit. Rev. Microbiol. 30:123-143
-
(2004)
Crit. Rev. Microbiol.
, vol.30
, pp. 123-143
-
-
Gupta, R.S.1
-
39
-
-
19844378240
-
Protein signatures distinctive of Alpha proteobacteria and its subgroups and a model for Alpha proteobacterial evolution
-
Gupta R.S. (2005). Protein signatures distinctive of Alpha proteobacteria and its subgroups and a model for Alpha proteobacterial evolution. Crit. Rev. Microbiol. 31:135
-
(2005)
Crit. Rev. Microbiol.
, vol.31
, pp. 135
-
-
Gupta, R.S.1
-
40
-
-
0038561132
-
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
-
Ikeda H., Ishikawa J., Hanamoto A., Shinose M., Kikuchi H., Shiba T., Sakaki Y., Hattori M., Omura S., (2003). Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat. Biotechnol. 21:526-531
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 526-531
-
-
Ikeda, H.1
Ishikawa, J.2
Hanamoto, A.3
Shinose, M.4
Kikuchi, H.5
Shiba, T.6
Sakaki, Y.7
Hattori, M.8
Omura, S.9
-
41
-
-
6944252215
-
The complete genomic sequence of Nocardia farcinica IFM 10152
-
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M., (2004). The complete genomic sequence of Nocardia farcinica IFM 10152. Proc. Natl. Acad. Sci. USA 101:14925-14930
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 14925-14930
-
-
Ishikawa, J.1
Yamashita, A.2
Mikami, Y.3
Hoshino, Y.4
Kurita, H.5
Hotta, K.6
Shiba, T.7
Hattori, M.8
-
42
-
-
25644435672
-
Signature proteins that are distinctive of alpha proteobacteria
-
Kainth P., Gupta R.S., (2005). Signature proteins that are distinctive of alpha proteobacteria. BMC Genomics 6:94
-
(2005)
BMC Genomics
, vol.6
, pp. 94
-
-
Kainth, P.1
Gupta, R.S.2
-
43
-
-
12444259324
-
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins
-
Kalinowski J., Bathe B., Bartels D., Bischoff N., Bott M., Burkovski A., Dusch N., Eggeling L., Eikmanns B.J., Gaigalat L., Goesmann A., Hartmann M., Huthmacher K., Kramer R., Linke B., McHardy A.C., Meyer F., Mockel B., Pfefferle W., Puhler A., Rey D.A., Ruckert C., Rupp O., Sahm H., Wendisch V.F., Wiegrabe I., Tauch A., (2003). The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J. Biotechnol. 104:5-25
-
(2003)
J. Biotechnol.
, vol.104
, pp. 5-25
-
-
Kalinowski, J.1
Bathe, B.2
Bartels, D.3
Bischoff, N.4
Bott, M.5
Burkovski, A.6
Dusch, N.7
Eggeling, L.8
Eikmanns, B.J.9
Gaigalat, L.10
Goesmann, A.11
Hartmann, M.12
Huthmacher, K.13
Kramer, R.14
Linke, B.15
McHardy, A.C.16
Meyer, F.17
Mockel, B.18
Pfefferle, W.19
Puhler, A.20
Rey, D.A.21
Ruckert, C.22
Rupp, O.23
Sahm, H.24
Wendisch, V.F.25
Wiegrabe, I.26
Tauch, A.27
more..
-
44
-
-
0025259313
-
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
-
Karlin S., Altschul S.F., (1990). Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. USA 87:2264-2268
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 2264-2268
-
-
Karlin, S.1
Altschul, S.F.2
-
47
-
-
1342271382
-
From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria
-
Lerat E., Daubin V., Moran N.A., (2003). From gene trees to organismal phylogeny in prokaryotes: The case of the gamma-proteobacteria. PLoS. Biol. 1:E19
-
(2003)
PLoS. Biol.
, vol.1
-
-
Lerat, E.1
Daubin, V.2
Moran, N.A.3
-
48
-
-
0002803581
-
Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systamatics
-
Boone D.R., Castenholz R.W., (eds) Springer-Verlag, Berlin
-
Ludwig W., Klenk H.-P., (2001). Overview: A phylogenetic backbone and taxonomic framework for prokaryotic systamatics. In: Boone D.R., Castenholz R.W., (eds) Bergey's Manual of Systematic Bacteriology. Springer-Verlag, Berlin, pp. 49-65
-
(2001)
Bergey's Manual of Systematic Bacteriology
, pp. 49-65
-
-
Ludwig, W.1
Klenk, H.-P.2
-
49
-
-
28544448786
-
Computational identification of strain-, species- and genus-specific proteins
-
Mazumder R., Natale D.A., Murthy S., Thiagarajan R., Wu C.H., (2005). Computational identification of strain-, species- and genus-specific proteins. BMC Bioinform. 6:279
-
(2005)
BMC Bioinform.
, vol.6
, pp. 279
-
-
Mazumder, R.1
Natale, D.A.2
Murthy, S.3
Thiagarajan, R.4
Wu, C.H.5
-
50
-
-
17844407663
-
Microbial Genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example
-
McAlpine J.B., Bachmann B.O., Piraee M., Tremblay S., Alarco A.M., Zazopoulos E., Farnet C.M., (2005). Microbial Genomics as a guide to drug discovery and structural elucidation: ECO-02301, a novel antifungal agent, as an example. J. Nat. Prod. 68:493-496
-
(2005)
J. Nat. Prod.
, vol.68
, pp. 493-496
-
-
McAlpine, J.B.1
Bachmann, B.O.2
Piraee, M.3
Tremblay, S.4
Alarco, A.M.5
Zazopoulos, E.6
Farnet, C.M.7
-
51
-
-
3242690878
-
The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp xyli
-
Monteiro-Vitorello C.B., Camargo L.E.A., Van Sluys M.A., Kitajima J.P., Truffi D., do Amaral A.M., Harakava R., de Oliveira J.C.F., Wood D., de Oliveira M.C., Miyaki C., Takita M.A., da Silva A.C.R., Furlan L.R., Carraro D.M., Camarotte G., Almeida N.F., Carrer H., Coutinho L.L., El Dorry H.A., Ferro M.I.T., Gagliardi P.R., Giglioti E., Goldman M.H.S., Goldman G.H., Kimura E.T., Ferro E.S., Kuramae E.E., Lemos E.G.M., Lemos M.V.F., Mauro S.M.Z., Machado M.A., Marino C.L., Menck C.F., Nunes L.R., Oliveira R.C., Pereira G.G., Siqueira W., de Souza A.A., Tsai S.M., Zanca A.S., Simpson A.J.G., Brumbley S.M., Setubal J.C., (2004). The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp xyli. Mol. Plant Microb. Interact. 17:827-836
-
(2004)
Mol. Plant Microb. Interact.
, vol.17
, pp. 827-836
-
-
Monteiro-Vitorello, C.B.1
Camargo, L.E.A.2
Van Sluys, M.A.3
Kitajima, J.P.4
Truffi, D.5
do Amaral, A.M.6
Harakava, R.7
de Oliveira, J.C.F.8
Wood, D.9
de Oliveira, M.C.10
Miyaki, C.11
Takita, M.A.12
da Silva, A.C.R.13
Furlan, L.R.14
Carraro, D.M.15
Camarotte, G.16
Almeida, N.F.17
Carrer, H.18
Coutinho, L.L.19
El Dorry, H.A.20
Ferro, M.I.T.21
Gagliardi, P.R.22
Giglioti, E.23
Goldman, M.H.S.24
Goldman, G.H.25
Kimura, E.T.26
Ferro, E.S.27
Kuramae, E.E.28
Lemos, E.G.M.29
Lemos, M.V.F.30
Mauro, S.M.Z.31
Machado, M.A.32
Marino, C.L.33
Menck, C.F.34
Nunes, L.R.35
Oliveira, R.C.36
Pereira, G.G.37
Siqueira, W.38
de Souza, A.A.39
Tsai, S.M.40
Zanca, A.S.41
Simpson, A.J.G.42
Brumbley, S.M.43
Setubal, J.C.44
more..
-
52
-
-
0034255952
-
Lifestyle evolution in symbiotic bacteria: Insights from genomics
-
Moran N.A., Wernegreen J.J., (2000). Lifestyle evolution in symbiotic bacteria: Insights from genomics. Trends Ecol. Evol. 15:321-326
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 321-326
-
-
Moran, N.A.1
Wernegreen, J.J.2
-
53
-
-
0036739151
-
Phylogenetic, amino acid content and indel analyses of the beta subunit of DNA-dependent RNA polymerase of gram-positive and gram-negative bacteria
-
Morse R., O'Hanlon K., Collins M.D., (2002). Phylogenetic, amino acid content and indel analyses of the beta subunit of DNA-dependent RNA polymerase of gram-positive and gram-negative bacteria. Int. J. Syst. Evol. Microbiol. 52:1477-1484
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1477-1484
-
-
Morse, R.1
O'Hanlon, K.2
Collins, M.D.3
-
54
-
-
0037810546
-
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens
-
Nishio Y., Nakamura Y., Kawarabayasi Y., Usuda Y., Kimura E., Sugimoto S., Matsui K., Yamagishi A., Kikuchi H., Ikeo K., Gojobori T., (2003). Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens. Genome Res. 13:1572-1579
-
(2003)
Genome Res.
, vol.13
, pp. 1572-1579
-
-
Nishio, Y.1
Nakamura, Y.2
Kawarabayasi, Y.3
Usuda, Y.4
Kimura, E.5
Sugimoto, S.6
Matsui, K.7
Yamagishi, A.8
Kikuchi, H.9
Ikeo, K.10
Gojobori, T.11
-
55
-
-
0037453742
-
Origins of highly mosaic mycobacteriophage genomes
-
Pedulla M.L., Ford M.E., Houtz J.M., Karthikeyan T., Wadsworth C., Lewis J.A., Jacobs-Sera D., Falbo J., Gross J., Pannunzio N.R., Brucker W., Kumar V., Kandasamy J., Keenan L., Bardarov S., Kriakov J., Lawrence J.G., Jacobs W.R., Hendrix R.W., Hatfull G.F., (2003). Origins of highly mosaic mycobacteriophage genomes. Cell 113:171-182
-
(2003)
Cell
, vol.113
, pp. 171-182
-
-
Pedulla, M.L.1
Ford, M.E.2
Houtz, J.M.3
Karthikeyan, T.4
Wadsworth, C.5
Lewis, J.A.6
Jacobs-Sera, D.7
Falbo, J.8
Gross, J.9
Pannunzio, N.R.10
Brucker, W.11
Kumar, V.12
Kandasamy, J.13
Keenan, L.14
Bardarov, S.15
Kriakov, J.16
Lawrence, J.G.17
Jacobs, W.R.18
Hendrix, R.W.19
Hatfull, G.F.20
more..
-
56
-
-
0034996154
-
Structure of the cell envelope of corynebacteria: Importance of the non-covalently bound lipids in the formation of the cell wall permeability barrier and fracture plane
-
Puech V., Chami M., Lemassu A., Laneelle M.A., Schiffler B., Gounon P., Bayan N., Benz R., Daffe M., (2001). Structure of the cell envelope of corynebacteria: Importance of the non-covalently bound lipids in the formation of the cell wall permeability barrier and fracture plane. Microbiology 147:1365-1382
-
(2001)
Microbiology
, vol.147
, pp. 1365-1382
-
-
Puech, V.1
Chami, M.2
Lemassu, A.3
Laneelle, M.A.4
Schiffler, B.5
Gounon, P.6
Bayan, N.7
Benz, R.8
Daffe, M.9
-
57
-
-
0043026766
-
Tropheryma whipplei twist: A human pathogenic Actinobacteria with a reduced genome
-
Raoult D., Ogata H., Audic S., Robert C., Suhre K., Drancourt M., Claverie J.M., (2003). Tropheryma whipplei twist: A human pathogenic Actinobacteria with a reduced genome. Genome Res. 13:1800-1809
-
(2003)
Genome Res.
, vol.13
, pp. 1800-1809
-
-
Raoult, D.1
Ogata, H.2
Audic, S.3
Robert, C.4
Suhre, K.5
Drancourt, M.6
Claverie, J.M.7
-
58
-
-
0034038207
-
Cloning and sequence analysis of the mercury resistance operon of Streptomyces sp. strain CHR28 reveals a novel putative second regulatory gene
-
Ravel J., DiRuggiero J., Robb F.T., Hill R.T., (2000). Cloning and sequence analysis of the mercury resistance operon of Streptomyces sp. strain CHR28 reveals a novel putative second regulatory gene. J. Bacteriol. 182:2345-2349
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2345-2349
-
-
Ravel, J.1
DiRuggiero, J.2
Robb, F.T.3
Hill, R.T.4
-
59
-
-
0026769090
-
Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes
-
Roller C., Ludwig W., Schleifer K.H. (1992). Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes. J. Gen. Microbiol. 138:167-175
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 167-175
-
-
Roller, C.1
Ludwig, W.2
Schleifer, K.H.3
-
60
-
-
0032833996
-
Purification and characterization of MerR, the regulator of the broad-spectrum mercury resistance genes in Streptomyces lividans 1326
-
Rother D., Mattes R., Altenbuchner J., (1999). Purification and characterization of MerR, the regulator of the broad-spectrum mercury resistance genes in Streptomyces lividans 1326. Mol. Gen. Genet. 262:154-162
-
(1999)
Mol. Gen. Genet.
, vol.262
, pp. 154-162
-
-
Rother, D.1
Mattes, R.2
Altenbuchner, J.3
-
61
-
-
0037195083
-
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
-
Schell M.A., Karmirantzou M., Snel B., Vilanova D., Berger B., Pessi G., Zwahlen M.C., Desiere F., Bork P., Delley M., Pridmore R.D., Arigoni F., (2002). The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc. Natl. Acad. Sci. USA 99:14422-14427
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14422-14427
-
-
Schell, M.A.1
Karmirantzou, M.2
Snel, B.3
Vilanova, D.4
Berger, B.5
Pessi, G.6
Zwahlen, M.C.7
Desiere, F.8
Bork, P.9
Delley, M.10
Pridmore, R.D.11
Arigoni, F.12
-
62
-
-
0029070194
-
A mycobacterium-leprae gene encoding a fibronectin-binding protein is used for efficient invasion of epithelial-cells and schwann-cells
-
Schorey J.S., Li Q.L., Mccourt D.W., Bongmastek M., Clarkcurtiss J.E., Ratliff T.L., Brown E.J., (1995). A mycobacterium-leprae gene encoding a fibronectin-binding protein is used for efficient invasion of epithelial-cells and schwann-cells. Infect. Immun. 63:2652-2657
-
(1995)
Infect. Immun.
, vol.63
, pp. 2652-2657
-
-
Schorey, J.S.1
Li, Q.L.2
Mccourt, D.W.3
Bongmastek, M.4
Clarkcurtiss, J.E.5
Ratliff, T.L.6
Brown, E.J.7
-
63
-
-
0033983745
-
Multiple paralogous genes related to the Streptomyces coelicolor developmental regulatory gene whiB are present in Streptomyces and other actinomycetes
-
Soliveri J.A., Gomez J., Bishai W.R., Chater K.F., (2000). Multiple paralogous genes related to the Streptomyces coelicolor developmental regulatory gene whiB are present in Streptomyces and other actinomycetes. Microbiol.-Uk 146:333-343
-
(2000)
Microbiol.-Uk
, vol.146
, pp. 333-343
-
-
Soliveri, J.A.1
Gomez, J.2
Bishai, W.R.3
Chater, K.F.4
-
64
-
-
0030893495
-
Proposal for a new hierarchic classification system, Actinobacteria classis nov
-
Stackebrandt E., Rainey F.A., WardRainey N.L., (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int. J. Syst. Bacteriol. 47:479-491
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 479-491
-
-
Stackebrandt, E.1
Rainey, F.A.2
WardRainey, N.L.3
-
66
-
-
0032469161
-
Cell envelope composition and organisation in the genus Rhodococcus
-
Sutcliffe I.C. (1998). Cell envelope composition and organisation in the genus Rhodococcus. Antonie van Leeuwenhoek 74: 49-58
-
(1998)
Antonie Van Leeuwenhoek
, vol.74
, pp. 49-58
-
-
Sutcliffe, I.C.1
-
67
-
-
7944226058
-
Lipoproteins of Mycobacterium tuberculosis: An abundant and functionally diverse class of cell envelope components
-
Sutcliffe I.C., Harrington D.J., (2004). Lipoproteins of Mycobacterium tuberculosis: An abundant and functionally diverse class of cell envelope components. FEMS Microbiol. Rev. 28:645-659
-
(2004)
FEMS Microbiol. Rev.
, vol.28
, pp. 645-659
-
-
Sutcliffe, I.C.1
Harrington, D.J.2
-
68
-
-
0028987131
-
Lipoproteins of gram-positive bacteria
-
Sutcliffe I.C., Russell R.R., (1995). Lipoproteins of gram-positive bacteria. J. Bacteriol. 177:1123-1128
-
(1995)
J. Bacteriol.
, vol.177
, pp. 1123-1128
-
-
Sutcliffe, I.C.1
Russell, R.R.2
-
69
-
-
21144440616
-
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora
-
Tauch A., Kaiser O., Hain T., Goesmann A., Weisshaar B., Albersmeier A., Bekel T., Bischoff N., Brune I., Chakraborty T., Kalinowski J., Meyer F., Rupp O., Schneiker S., Viehoever P., Puhler A., (2005). Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora. J. Bacteriol. 187:4671-4682
-
(2005)
J. Bacteriol.
, vol.187
, pp. 4671-4682
-
-
Tauch, A.1
Kaiser, O.2
Hain, T.3
Goesmann, A.4
Weisshaar, B.5
Albersmeier, A.6
Bekel, T.7
Bischoff, N.8
Brune, I.9
Chakraborty, T.10
Kalinowski, J.11
Meyer, F.12
Rupp, O.13
Schneiker, S.14
Viehoever, P.15
Puhler, A.16
-
70
-
-
18044404834
-
Distribution and diversity of symbiotic thermophiles, Symbiobacterium thermophilum and related bacteria, in natural environments
-
Ueda K., Ohno M., Yamamoto K., Nara H., Mori Y., Shimada M., Hayashi M., Oida H., Terashima Y., Nagata M., Beppu T., (2001). Distribution and diversity of symbiotic thermophiles, Symbiobacterium thermophilum and related bacteria, in natural environments. Appl. Environ. Microbiol. 67:3779-3784
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3779-3784
-
-
Ueda, K.1
Ohno, M.2
Yamamoto, K.3
Nara, H.4
Mori, Y.5
Shimada, M.6
Hayashi, M.7
Oida, H.8
Terashima, Y.9
Nagata, M.10
Beppu, T.11
-
71
-
-
4644315656
-
Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism
-
Ueda K., Yamashita A., Ishikawa J., Shimada M., Watsuji T., Morimura K., Ikeda H., Hattori M., Beppu T., (2004). Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism. Nucleic Acids Res. 32:4937-4944
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4937-4944
-
-
Ueda, K.1
Yamashita, A.2
Ishikawa, J.3
Shimada, M.4
Watsuji, T.5
Morimura, K.6
Ikeda, H.7
Hattori, M.8
Beppu, T.9
-
72
-
-
14744275703
-
The power of phylogenetic comparison in revealing protein function
-
Yang Z. (2005). The power of phylogenetic comparison in revealing protein function. Proc. Natl. Acad. Sci. USA 102:3179-3180
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3179-3180
-
-
Yang, Z.1
-
73
-
-
0037318402
-
A genomics-guided approach for discovering and expressing cryptic metabolic pathways
-
Zazopoulos E., Huang K.X., Staffa A., Liu W., Bachmann B.O., Nonaka K., Ahlert J., Thorson J.S., Shen B., Farnet C.M., (2003). A genomics-guided approach for discovering and expressing cryptic metabolic pathways. Nat. Biotechnol. 21:187-190
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 187-190
-
-
Zazopoulos, E.1
Huang, K.X.2
Staffa, A.3
Liu, W.4
Bachmann, B.O.5
Nonaka, K.6
Ahlert, J.7
Thorson, J.S.8
Shen, B.9
Farnet, C.M.10
|