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Volumn 44, Issue 1, 2007, Pages 494-500

Conflicting phylogenetic signal of nuclear vs mitochondrial DNA markers in midwife toads (Anura, Discoglossidae, Alytes): Deep coalescence or ancestral hybridization?

Author keywords

[No Author keywords available]

Indexed keywords

FIBRINOGEN; MITOCHONDRIAL DNA; NADH DEHYDROGENASE SUBUNIT 4; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; UNCLASSIFIED DRUG;

EID: 34249695921     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.03.001     Document Type: Article
Times cited : (45)

References (55)
  • 1
    • 0011557724 scopus 로고
    • Noticia del hallazgo de Baleaphryne (Amphibia: Anura: Discoglossidae) viviente en Mallorca
    • Alcover J.A., and Mayol J. Noticia del hallazgo de Baleaphryne (Amphibia: Anura: Discoglossidae) viviente en Mallorca. Doñana, Acta Vertebrata 7 (1980) 266-269
    • (1980) Doñana, Acta Vertebrata , vol.7 , pp. 266-269
    • Alcover, J.A.1    Mayol, J.2
  • 2
    • 0031520203 scopus 로고    scopus 로고
    • Phylogeny and biogeography of midwife toads: a reappraisal
    • Altaba C. Phylogeny and biogeography of midwife toads: a reappraisal. Contrib. Zool. 66 (1997) 257-262
    • (1997) Contrib. Zool. , vol.66 , pp. 257-262
    • Altaba, C.1
  • 3
    • 0028154142 scopus 로고
    • Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico
    • Arévalo E., Davis S.K., and Sites Jr. J.W. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Sys. Biol. 43 (1994) 387-418
    • (1994) Sys. Biol. , vol.43 , pp. 387-418
    • Arévalo, E.1    Davis, S.K.2    Sites Jr., J.W.3
  • 4
    • 0030529322 scopus 로고
    • Morphological and allozyme studies of midwife toads (genus Alytes), including the description of two new taxa from Spain
    • Arntzen J.W., and García-París M. Morphological and allozyme studies of midwife toads (genus Alytes), including the description of two new taxa from Spain. Contrib. Zool. 65 (1995) 5-34
    • (1995) Contrib. Zool. , vol.65 , pp. 5-34
    • Arntzen, J.W.1    García-París, M.2
  • 5
    • 0031520663 scopus 로고    scopus 로고
    • Phylogeny and biogeography of midwife toads (Alytes, Discoglossidae): a rebuttal
    • Arntzen J.W., and García-París M. Phylogeny and biogeography of midwife toads (Alytes, Discoglossidae): a rebuttal. Contrib. Zool. 66 (1997) 263-268
    • (1997) Contrib. Zool. , vol.66 , pp. 263-268
    • Arntzen, J.W.1    García-París, M.2
  • 6
    • 34249674604 scopus 로고    scopus 로고
    • Bons, J., Geniez, P., 1996. Anfibios y Reptiles de Marruecos. Asociación Herpetológica Española, Barcelona.
  • 7
    • 33747338447 scopus 로고    scopus 로고
    • Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale)
    • Buckley T.R., Cordeiro M., Marshall D.C., and Simon C. Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale). Sys. Biol. 55 (2006) 411-425
    • (2006) Sys. Biol. , vol.55 , pp. 411-425
    • Buckley, T.R.1    Cordeiro, M.2    Marshall, D.C.3    Simon, C.4
  • 8
    • 24144479826 scopus 로고    scopus 로고
    • Systematics of the genus Sigmodon: DNA sequences from beta-fibrinogen and cytochrome b
    • Carroll D.S., and Bradley R.D. Systematics of the genus Sigmodon: DNA sequences from beta-fibrinogen and cytochrome b. The Southwestern Naturalist 50 (2005) 342-349
    • (2005) The Southwestern Naturalist , vol.50 , pp. 342-349
    • Carroll, D.S.1    Bradley, R.D.2
  • 9
    • 0043074683 scopus 로고    scopus 로고
    • Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses
    • Creer S., Malhotra A., and Thorpe R.S. Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus, Trimeresurus: separate, simultaneous, and conditional data combination analyses. Mol. Biol. Evol. 20 (2003) 1240-1251
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1240-1251
    • Creer, S.1    Malhotra, A.2    Thorpe, R.S.3
  • 12
    • 14844286493 scopus 로고    scopus 로고
    • Phylogenetics of the common raven complex (Corvus: Corvidae) and the utility of ND4, COI and intron 7 of the β-fibrinogen gene in avian molecular systematics
    • Feldman C.R., and Omland K.E. Phylogenetics of the common raven complex (Corvus: Corvidae) and the utility of ND4, COI and intron 7 of the β-fibrinogen gene in avian molecular systematics. Zoologica Scripta 34 (2005) 145-156
    • (2005) Zoologica Scripta , vol.34 , pp. 145-156
    • Feldman, C.R.1    Omland, K.E.2
  • 13
    • 1642465063 scopus 로고    scopus 로고
    • Testing alternative vicariance scenarios in Western Mediterranean discoglossid frogs
    • Fromhage L., Vences M., and Veith M. Testing alternative vicariance scenarios in Western Mediterranean discoglossid frogs. Mol. Phylogenet. Evol. 31 (2004) 308-322
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 308-322
    • Fromhage, L.1    Vences, M.2    Veith, M.3
  • 14
    • 0000725079 scopus 로고
    • Variabilidad genética y distribución geográfica de Alytes obstetricans almogavarii en España
    • García-París M. Variabilidad genética y distribución geográfica de Alytes obstetricans almogavarii en España. Revista Española de Herpetología 9 (1995) 133-138
    • (1995) Revista Española de Herpetología , vol.9 , pp. 133-138
    • García-París, M.1
  • 15
    • 0242600599 scopus 로고    scopus 로고
    • Dispersal of viviparity across contact zones in Iberian populations of Fire Salamanders (Salamandra) inferred from discordance of genetic and morphological traits
    • García-París M., Alcobendas M., Buckley D., and Wake D.B. Dispersal of viviparity across contact zones in Iberian populations of Fire Salamanders (Salamandra) inferred from discordance of genetic and morphological traits. Evolution 57 (2003) 129-143
    • (2003) Evolution , vol.57 , pp. 129-143
    • García-París, M.1    Alcobendas, M.2    Buckley, D.3    Wake, D.B.4
  • 16
    • 34249675169 scopus 로고    scopus 로고
    • García-París, M., Arntzen, J.W., 2002. Alytes dickhilleni Arntzen and García-París, 1995. In: Pleguezuelos, J.M., Márquez, R., Lizana, M. (Eds.), Atlas y Libro Rojo de los Anfibios y Reptiles de España. Dirección General de la Conservación de la Naturaleza, Asociación Herpetológica Española, Madrid, pp. 76-78.
  • 17
    • 1842692770 scopus 로고    scopus 로고
    • Nuevo estatus taxonómico para las poblaciones iberomediterráneas de Alytes obstetricans (Anura: Discoglossidae)
    • García-París M., and Martínez-Solano I. Nuevo estatus taxonómico para las poblaciones iberomediterráneas de Alytes obstetricans (Anura: Discoglossidae). Revista Española de Herpetología 15 (2001) 99-113
    • (2001) Revista Española de Herpetología , vol.15 , pp. 99-113
    • García-París, M.1    Martínez-Solano, I.2
  • 18
    • 0034775938 scopus 로고    scopus 로고
    • Nuclear and mtDNA phylogenies of the Trimeresurus complex: implications for the gene versus species tree debate
    • Giannasi N., Malhotra A., and Thorpe R.S. Nuclear and mtDNA phylogenies of the Trimeresurus complex: implications for the gene versus species tree debate. Mol. Phylogenet. Evol. 19 (2001) 57-66
    • (2001) Mol. Phylogenet. Evol. , vol.19 , pp. 57-66
    • Giannasi, N.1    Malhotra, A.2    Thorpe, R.S.3
  • 19
    • 33644783122 scopus 로고    scopus 로고
    • Phylogeny and evolution of the green lizards, Lacerta spp. (Squamata: Lacertidae) based on mitochondrial and nuclear DNA sequences
    • Godinho R., Crespo E.G., Ferrand N., and Harris D.J. Phylogeny and evolution of the green lizards, Lacerta spp. (Squamata: Lacertidae) based on mitochondrial and nuclear DNA sequences. Amphibia-Reptilia. 26 (2005) 271-286
    • (2005) Amphibia-Reptilia. , vol.26 , pp. 271-286
    • Godinho, R.1    Crespo, E.G.2    Ferrand, N.3    Harris, D.J.4
  • 20
    • 33745832330 scopus 로고    scopus 로고
    • Genealogy of the nuclear β-fibrinogen locus in a highly structured lizard species: comparison with mtDNA and evidence for intragenic recombination in the hybrid zone
    • Godinho R., Mendonça B., Crespo E.G., and Ferrand N. Genealogy of the nuclear β-fibrinogen locus in a highly structured lizard species: comparison with mtDNA and evidence for intragenic recombination in the hybrid zone. Heredity 96 (2006) 454-463
    • (2006) Heredity , vol.96 , pp. 454-463
    • Godinho, R.1    Mendonça, B.2    Crespo, E.G.3    Ferrand, N.4
  • 21
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based test of topologies in phylogenetics
    • Goldman N., Anderson J.P., and Rodrigo A.G. Likelihood-based test of topologies in phylogenetics. Sys. Biol. 49 (2000) 652-670
    • (2000) Sys. Biol. , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 22
    • 34249744832 scopus 로고    scopus 로고
    • Grossenbacher, K., 1997. Alytes obstetricans (Laurenti, 1768). In: Gasc et al. (Eds.), Atlas of Amphibians and Reptiles in Europe. Societas Europaea Herpetologica, Paris, pp. 94-95.
  • 23
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids. Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 24
    • 0038247862 scopus 로고    scopus 로고
    • High intron sequence conservation across three mammalian orders suggests functional constraints
    • Hare M.P., and Palumbi S.R. High intron sequence conservation across three mammalian orders suggests functional constraints. Mol. Biol. Evol. 20 (2003) 969-978
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 969-978
    • Hare, M.P.1    Palumbi, S.R.2
  • 26
    • 27644490696 scopus 로고    scopus 로고
    • Reinforcement drives rapid allopatric speciation
    • Hoskin C.J., Higgie M., McDonald K.R., and Moritz C. Reinforcement drives rapid allopatric speciation. Nature 437 (2005) 1353-1356
    • (2005) Nature , vol.437 , pp. 1353-1356
    • Hoskin, C.J.1    Higgie, M.2    McDonald, K.R.3    Moritz, C.4
  • 27
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson R.R., and Kaplan N.L. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111 (1985) 147-164
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 28
    • 0033936592 scopus 로고    scopus 로고
    • Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
    • Johnson K.P., and Clayton D.H. Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes). Mol. Phylogenet. Evol. 14 (2000) 141-151
    • (2000) Mol. Phylogenet. Evol. , vol.14 , pp. 141-151
    • Johnson, K.P.1    Clayton, D.H.2
  • 29
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison W.P. Gene trees in species trees. Sys. Biol. 46 (1997) 523-536
    • (1997) Sys. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 31
    • 33847310250 scopus 로고    scopus 로고
    • Matocq, M.D., Shurtliff, R., Feldman, C.R., 2007. Phylogenetics of the woodrat genus Neotoma (Rodentia: Muridae): Implications for the evolution of phenotypic variation in male external genitalia. Mol. Phylogenet. Evol., doi: 10.1016/j.ympev.2006.08.011.
  • 32
    • 0001092061 scopus 로고
    • Relationships among Discoglossid frogs: an albumin perspective
    • Maxson L.R., and Szymura J.M. Relationships among Discoglossid frogs: an albumin perspective. Amphibia-Reptilia 5 (1984) 245-252
    • (1984) Amphibia-Reptilia , vol.5 , pp. 245-252
    • Maxson, L.R.1    Szymura, J.M.2
  • 33
    • 0000058501 scopus 로고
    • Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear gene trees
    • Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear gene trees. Evolution 49 (1995) 718-726
    • (1995) Evolution , vol.49 , pp. 718-726
    • Moore, W.S.1
  • 34
    • 0347724024 scopus 로고    scopus 로고
    • Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data
    • Moyle R.G. Phylogenetics of barbets (Aves: Piciformes) based on nuclear and mitochondrial DNA sequence data. Mol. Phylogenet. Evol. 30 (2004) 187-200
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 187-200
    • Moyle, R.G.1
  • 35
    • 33646571865 scopus 로고    scopus 로고
    • Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and systematics of the P. mcallii-platyrhinos mtDNA complex
    • Mulcahy D.G., Spaulding A.W., Mendelson III J.R., and Brodie Jr. E.D. Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and systematics of the P. mcallii-platyrhinos mtDNA complex. Mol. Ecol. 15 (2006) 1807-1826
    • (2006) Mol. Ecol. , vol.15 , pp. 1807-1826
    • Mulcahy, D.G.1    Spaulding, A.W.2    Mendelson III, J.R.3    Brodie Jr., E.D.4
  • 36
    • 0031773680 scopus 로고    scopus 로고
    • ModelTest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. ModelTest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 37
    • 0031255043 scopus 로고    scopus 로고
    • The utility of DNA sequences of an intron from the β-Fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)
    • Prychitko T.M., and Moore W.S. The utility of DNA sequences of an intron from the β-Fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae). Mol. Phylogenet. Evol. 8 (1997) 193-204
    • (1997) Mol. Phylogenet. Evol. , vol.8 , pp. 193-204
    • Prychitko, T.M.1    Moore, W.S.2
  • 38
    • 0033934006 scopus 로고    scopus 로고
    • Comparative evolution of the mitochondrial cytochrome b gene and nuclear β-fibrinogen intron 7 in woodpeckers
    • Prychitko T.M., and Moore W.S. Comparative evolution of the mitochondrial cytochrome b gene and nuclear β-fibrinogen intron 7 in woodpeckers. Mol. Biol. Evol. 17 (2000) 1101-1111
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1101-1111
    • Prychitko, T.M.1    Moore, W.S.2
  • 39
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut A., and Grassly N.C. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13 (1997) 235-238
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 40
    • 34249697748 scopus 로고    scopus 로고
    • Rambaut, A., Drummond, A., 2004. TRACER. Vers. 1.1: MCMC trace analysis tool. University of Oxford. Software available at http://evolve.zoo.ox.ac.uk/software.html.
  • 41
    • 34249687265 scopus 로고    scopus 로고
    • Román, A., 2002. Alytes muletensis (Sanchiz y Adrover, 1979). In: Pleguezuelos, J.M., Márquez, R., Lizana, M. (Eds.), Atlas y Libro Rojo de los Anfibios y Reptiles de España. Dirección General de la Conservación de la Naturaleza, Asociación Herpetológica Española, Madrid, pp. 79-81.
  • 42
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 43
    • 0032972599 scopus 로고    scopus 로고
    • DNASP version 3: an integrated program for molecular population genetics and molecular evolution analysis
    • Rozas J., and Rozas R. DNASP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15 (1999) 174-175
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 45
    • 34249748558 scopus 로고    scopus 로고
    • Sanchiz, B., 1984. Análisis filogenético de la tribu Alytini (Anura, Discoglossidae) mediante el estudio de su morfoestructura ósea. In: Hemmer, H., Alcover, J.A. (Eds.), Historia Biológica del Ferreret. Moll, Mallorca, pp. 61-108.
  • 46
    • 0002666578 scopus 로고
    • Anfibios fósiles del Pleistoceno de Mallorca
    • Sanchiz B., and Adrover R. Anfibios fósiles del Pleistoceno de Mallorca. Doñana, Acta Vertebrata 4 (1979) 5-25
    • (1979) Doñana, Acta Vertebrata , vol.4 , pp. 5-25
    • Sanchiz, B.1    Adrover, R.2
  • 47
    • 33748525200 scopus 로고    scopus 로고
    • Assessing the phylogenetic signal on the nuclear β-fibrinogen intron 7 in salamandrids (Amphibia:Salamandridae)
    • Sequeira F., Ferrand N., and Harris D.J. Assessing the phylogenetic signal on the nuclear β-fibrinogen intron 7 in salamandrids (Amphibia:Salamandridae). Amphibia-Reptilia 27 (2006) 409-418
    • (2006) Amphibia-Reptilia , vol.27 , pp. 409-418
    • Sequeira, F.1    Ferrand, N.2    Harris, D.J.3
  • 48
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M., Smith N., and Donnelly P. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics 68 (2001) 978-989
    • (2001) American Journal of Human Genetics , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.2    Donnelly, P.3
  • 49
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 50
    • 34249726837 scopus 로고    scopus 로고
    • *. Phylogenetic Analysis Using Parsimony (* and Other Methods), version 4, Sinauer Associates, Sunderland, Masachussetts.
  • 51
    • 34249738802 scopus 로고    scopus 로고
    • Swofford, D.L., Olsen, G., Waddell, P., Hillis, D., 1996. Phylogenetic inference. In: D. Hillis, C. Moritz, and B.K. Mable (Eds.), Molecular systematics. Sinauer, Sunderland, Mass, pp. 407-514.
  • 52
    • 0036368055 scopus 로고    scopus 로고
    • A test of a mitochondrial gene-based phylogeny of woodpeckers (Genus Picoides) using an independent nuclear gene
    • Weibel A.C., and Moore W.S. A test of a mitochondrial gene-based phylogeny of woodpeckers (Genus Picoides) using an independent nuclear gene. Mol. Phylogenet. Evol. 22 (2002) 247-257
    • (2002) Mol. Phylogenet. Evol. , vol.22 , pp. 247-257
    • Weibel, A.C.1    Moore, W.S.2
  • 53
    • 33747364038 scopus 로고    scopus 로고
    • Testing hypotheses of speciation in the Plethodon jordani species complex with allozymes and mithocondrial DNA sequences
    • Weisrock D.W., and Larson A. Testing hypotheses of speciation in the Plethodon jordani species complex with allozymes and mithocondrial DNA sequences. Biological Journal of the Linnean Society 89 (2006) 25-51
    • (2006) Biological Journal of the Linnean Society , vol.89 , pp. 25-51
    • Weisrock, D.W.1    Larson, A.2
  • 54
    • 17644420043 scopus 로고    scopus 로고
    • Phylogeographic analysis of mitochondrial gene flow and introgression in the salamander, Plethodon shermani
    • Weisrock D.W., Kozak K.H., and Larson A. Phylogeographic analysis of mitochondrial gene flow and introgression in the salamander, Plethodon shermani. Mol. Ecol. 14 (2005) 1457-1472
    • (2005) Mol. Ecol. , vol.14 , pp. 1457-1472
    • Weisrock, D.W.1    Kozak, K.H.2    Larson, A.3
  • 55
    • 15744374569 scopus 로고    scopus 로고
    • Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear β-fibrinogen intron 7 to carnivores
    • Yu L., and Zhang Y.P. Phylogenetic studies of pantherine cats (Felidae) based on multiple genes, with novel application of nuclear β-fibrinogen intron 7 to carnivores. Mol. Phylogenet. Evol. 35 (2005) 483-495
    • (2005) Mol. Phylogenet. Evol. , vol.35 , pp. 483-495
    • Yu, L.1    Zhang, Y.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.