Bayesian data mining of protein domains gives an efficient predictive algorithm and new insight

Journal of Molecular Modeling

Volumn 13, Issue 1, 2007, Pages 275-282

  Joshi, Rajani R ^a   Samant, Vivekanand V ^a,b  

^a INDIAN INSTITUTE OF TECHNOLOGY BOMBAY   (India)

^b PERSISTENT SYSTEMS LTD   (India)

Author keywords

Bayes' classification; Probability computation; PROMOTIF; Proteins structural domains; PSIPRED

Indexed keywords

ACCURACY; ALGORITHM; ANALYTIC METHOD; ARTICLE; BAYES THEOREM; COMPUTER ANALYSIS; CONTROLLED STUDY; CORRELATION ANALYSIS; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; MOLECULAR MODEL; PREDICTION; PRIORITY JOURNAL; PROBABILITY; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS; THREE DIMENSIONAL IMAGING; VALIDATION STUDY;

ALGORITHMS; AMINO ACID MOTIFS; BAYES THEOREM; COMPUTATIONAL BIOLOGY; DATABASES, PROTEIN; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PREDICTIVE VALUE OF TESTS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; PROTEOMICS; SOFTWARE;

EID: 34249327161     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-006-0141-z     Document Type: Article

References (20)

1. Joshi RR, Jyothi S (2003) Comput Biol Chem 27:241-252
2. Jyothi S, Mustafi SM, Chary KVR, Joshi RR (2005) J Mol Mod 11:481-488
3. Wheelan SJ, Marchler-Baucer A, Bryant SH (2000) Bioinformatics 16:613-618
4. George RA, Haringa J (2002) J Mol Biol 316:839-851
5. Marsden RL, McGuffin LJ, Jones DT (2002) Protein Sci 11:2814-2824
6. Sim J, Kim SY, Lee J (2005) Proteins Struct Func Genet 59:627-632
7. Suyama M, Ohara O (2003) Bioinformatics 19:673-674
8. Tanaka T, Kuroda Y, Yokoyama S (2003) J Struct Func Genomics 4:79-85
9. Hutchinson EG, Thornton JM (1996) Protein Sci 5:212-220
10. Joshi RR, Samant VV (2006) J Mol Model (in press)
11. Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997) Structure 5:1093-1108
12. Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) J Mol Biol 247:536-540
13. Berman HM, Westbrook J, Feng Z, Gillilad G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) Nucl Acids Res 28:235-242
14. McGuffin LJ, Jones DT (2000) Bioinformatics 16:404-405
15. Kabsch W, Sander C (1983) Biopolymers 22:2577-2637
16. Berthold M, Hand DJ (eds) (1999) Intelligent data analysis. Springer, Berlin Heidelberg New York
17. Baldi P, Brunak S (2001) Bioinformatics: The machine learning approach (adaptive computation and machine learning), 2nd edn. The MIT Press
18. Sowdhamini R, Rufino SD, Blundell TL (1996) Fold Des 1:209-220
19. Batencourt MR, Skolnick J (2001) Biopolymers 59:305-309
20. Stanfel LE (1996) J Theoret Biol 183:195-205