Human Genetic Diversity and the Epidemiology of Parasitic and Other Transmissible Diseases

Advances in Parasitology

Volumn 64, Issue , 2007, Pages

  Tibayrenc, Michel ^a  

^a Institute of research for development Thailand   (Thailand)

Author keywords

[No Author keywords available]

Indexed keywords

CHAGAS DISEASE; ETHNOLOGY; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; GENOMICS; HUMAN; NONHUMAN; PARASITOSIS; PRIORITY JOURNAL; RACE; REVIEW;

EID: 34247856166     PISSN: 0065308X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0065-308X(06)64004-9     Document Type: Review

References (102)

1. Abel L., and Dessein A.J. The impact of host genetics on susceptibility to human infectious diseases. Current Opinion in Immunology 9 (1997) 509-516
2. Abel L., Sanchez F.O., Oberti J., Thuc N.V., Hoa L.V., Lap V.D., Skamene E., Lagrange P.H., and Schurr E. Susceptibility to leprosy is linked to the human NRAMP1 gene. Journal of Infectious Diseases 177 (1998) 133-145
3. Alison, A.C. (1954). Protection afforded by sickle-cell trait against subtertian malarial infection. British Medical Journal, 290-294.
4. Alric L., Fort M., Izopet J., Vinel J.P., Duffaut M., and Abbal M. Association between genes of the major histocompatibility complex class II and the outcome of hepatitis C virus infection. Journal of Infectious Diseases 179 (1999) 1309-1310
5. Anderson R.M., and May R.M. Modern vaccines: immunization and herd immunity. Lancet 335 (1990) 641-645
6. Anonymous (2006). Jousting for HUGOBase. Nature Genetics 38, 599.
7. Avise J.C. Molecular Markers, Natural History and Evolution. 2nd edn (2004), Chapman and Hall, New York and London
8. Ayala F.J., and Escalante A. The evolution of human populations: a molecular perspective. Molecular Phylogenetics and Evolution 5 (1996) 188-201
9. Barbossa C.A.A., Morton N.E., Pao D.C., and Krieger H. Biological and cultural determinants of immunoglobulin levels in a Brazilian population with Chagas' disease. Human Genetics 59 (1981) 161-163
10. Bargues M.D., Klisiowicza D.R., Panzera F., Noireau F., Marcilla A., Perez R., Rojas M.G., O'Connor J.E., Gonzalez-Candelas F., Galvão C., Jurberg J., Carcavallo R.U., Dujardin J.P., and Mas-Coma S. Origin and phylogeography of the Chagas disease main vector Triatoma infestans based on nuclear rDNA sequences and genome size. Infection, Genetics and Evolution 6 (2006) 46-62
11. Barnabé C., Brisse S., and Tibayrenc M. Population structure and genetic typing of Trypanosoma cruzi, the agent of Chagas' disease: a multilocus enzyme electrophoresis approach. Parasitology 150 (2000) 513-526
12. Bellamy R., Beyers N., McAdam K.P., Ruwende C., Gie R., Samaai P., Bester D., Meyer M., Corrah T., Collin M., Camidge D.R., Wilkinson D., Hoal-Van Helden E., Whittle H.C., Amos W., van Helden P., and Hill A.V. Genetic susceptibility to tuberculosis in Africans: a genome-wide scan. Proceedings of the National Academy of Sciences of the USA 97 (2000) 8005-8009
13. Blackwell J.M. Genetic susceptibility to leishmanial infections: studies in mice and man. Parasitology 112 supplement (1996) S67-S74
14. Brenière S.F., Poch O., Selaes H., Tibayrenc M., Lemesre J.L., Antezana G., and Desjeux P. Specific humoral depression in chronic patients infected by Trypanosoma cruzi. Revista do Instituto de Medicina Tropica de São Paulo 26 (1984) 254-258
15. Bucheton B., Kheir M.M., El-Safi S.H., Hammad A., Mergani A., Mary C., Abel L., and Dessein A. The interplay between environmental and host factors during an outbreak of visceral leishmaniasis in eastern Sudan. Microbes and Infection 4 (2002) 1449-1457
16. Bucheton B., Abel L., El-Safi S., Kheir M.M., Pavek S., Lemainque A., and Dessein A.J. A major susceptibility locus on chromosome 22q12 plays a critical role in the control of kala-azar. American Journal of Human Genetics 73 (2003) 1052-1060
17. Buscaglia C.A., and Di Noia J.M. Trypanosoma cruzi clonal diversity and the epidemiology of Chagas disease. Microbes and Infection 5 (2003) 419-427
18. Cabello P.H., Lima A.M., Azevedo E.S., and Krieger H. Familial aggregation of Leishmania chagasi infection in northeastern Brazil. American Journal of Tropical Medicine and Hygiene 52 (1995) 364-365
19. Campbell D.A., Westenberger S.J., and Sturm N.R. The determinants of Chagas disease: connecting parasite and host genetics. Current Molecular Medicine 4 (2004) 549-562
20. Cann H.M., de Toma C., Cazes L., Legrand M.F., Morel V., Piouffre L., Bodmer J., Bodmer W.F., Bonne-Tamir B., Cambon-Thomsen A., Chen Z., Chu J., Carcassi C., Contu L., Du R., Excoffier L., Ferrara G.B., Friedlaender J.S., Groot H., Gurwitz D., Jenkins T., Herrera R.J., Hunag X., Kidd J., Kidd K.K., Langaney A., Lin A.A., Qasim Mehdi S., Parham P., Piazza A., Pistillo M.P., Qian Y., Shu Q., Xu J., Zhu S., Weber J.L., Greely H.T., Feldman M.W., Thomas G., Dausset J., and Cavalli-Sforza L. A human genome diversity cell line panel. Science 296 (2002) 261-262
21. Cavalli-Sforza L., and Feldman M.W. The application of molecular genetic approaches to the study of human evolution. Nature Genetics 33 supplement (2003) 266-275
22. Cavalli-Sforza L.L., Wilson A.C., Cantor C.R., Cook-Deegan R.M., and King M.C. Call for a world-wide survey of human genetic diversity: a vanishing opportunity for the human genome project. Genomics 11 (1991) 490-491
23. Check E. Patchwork people. Nature 437 (2005) 1084-1086
24. Chimpanzee Sequencing and Analysis Consortium (2005). Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437, 69-87.
25. Cho M.K., and Sankar P. Forensic medicine and ethical, legal and social implications beyond the clinic. Nature Genetics 36 supplement (2004) S8-S11
26. Chu J.Y., Huang W., Kuang S.Q., Wang J.M., Xu J.J., Chu Z.T., Yanga Z.Q., Lina K.Q., Li P., Wu M., Geng Z.C., Tang C.C., Du R.F., and Jing L. Genetic relationship of populations in China. Proceedings of the National Academy of Sciences of the USA 20 (1998) 11763-11768
27. Cooke G.S., and Hill A.V.S. Genetics of susceptibility to human infectious diseases. Nature Reviews Genetics 2 (2001) 967-977
28. Couzin J. The Hap Map gold rush: researchers mine a rich deposit. Science 312 (2006) 1131
29. Craig Venter, J. and 273 others (2001). The sequence of the human genome. Science, 291, 1304-1351.
30. Cressey, Y. and Lallemant, M. (in press). Pharmacogenetics of antiretroviral drugs for the treatment of HIV-infected patients: an update. Infection, Genetics and Evolution.
31. Dean, M., Carrington, M., Winckler, C., Huttley, G.A., Smith, M.W., Allikmets, R., Goedert, J.J., Buchbinder, S.P., Vittinghoff, E., Gomperts, E., Donfield, S., Vlahov, D., Kaslow, R., Saah, A., Rinaldo, C., Detels, R., Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study and O'Brien, S. (1996). Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Science, 273, 1856-1862.
32. Dessein A.J., Marquet S., Henri S., El Wali N.E., Hillaire D., Rodrigues V., Prata A., Ali Q.M., Gharib B., de Reggi M., Magzoub M.M., Saeed O.K., Abdelhameed A.A., and Abel L. Infection and disease in human schistosomiasis mansoni are under distinct major gene control. Microbes and Infection 1 (1999) 561-567
33. Dujardin, J.P., Beard, C.B. and Ryckman, R. (in press). The relevance of wing geometry in entomological surveillance of Triatominae, vectors of Chagas disease. Infection, Genetics and Evolution.
34. Fae K.C., Drigo S.A., Cuha-Neto E., Ianni B., Mady C., Kalil J., and Goldberg A.C. HLA and beta-myosin heavy chain do not influence susceptibility to Chagas disease cardiomyopathy. Microbes and Infection 2 (2000) 745-751
35. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
36. Fernandes-Mestre M.T., Layrisse Z., Montagnani S., Acquatella H., Catalioti F., Matos M., Balbas O., Makhatadze N., Dominguez E., Herrera F., and Madrigal A. Influence of the HLA class II polymorphism in chronic Chagas disease. Parasite Immunology 20 (1998) 197-203
37. Feuk L., Carson A.R., and Scherer S.W. Structural variation in the human genome. Nature Reviews Genetics 7 (2006) 85-97
38. Flintoft L. Uniting human variation. Nature Reviews Genetics 6 (2005) 668
39. Fulton T., and Strobeck C. Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets. Molecular Phylogenetics and Evolution 41 (2006) 165-181
40. Garcia A., Marquet S., Bucheton B., Hillaire D., Cot M., Fievet N., Dessein A.J., and Abel L. Linkage analysis of blood Plasmodium falciparum levels: interest of the 5q31-q33 chromosome region. American Journal of Tropical Medicine and Hygiene 58 (1998) 705-709
41. Gary T. The human genome project and the future of medicine. Tennessee Nurse 64 (2001) 8-10
42. Gaunt M.W., Yeo M., Frame I.A., Stothard J.R., Carrasco H.J., Taylor M.C., Mena S.S., Veazey P., Miles G.A., Acosta N., Rojas de Arias A., and Miles M.A. Mechanism of genetic exchange in American trypanosomes. Nature 421 (2003) 936-939
43. Gentillini M. Médecine Tropicale (1993), Flammarion, Paris
44. Gonzalez E., Kulkarni H., Bolivar H., Mangano A., Sanchez R., Catano G., Nibbs R.J., Freedman B.I., Quinones M.P., Bamshad M.J., Murthy K.K., Rovin B.H., Bradley W., Clark R.A., Anderson S.A., O'Connell R.J., Agan B.K., Ahuja S.S., Bologna R., Sen L., Dolan M.J., and Ahuja S.K. The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility. Science 307 (2005) 1434-1440
45. Haldane J.B.S. Disease and evolution. La Ricerca Scientifica 19 supplement (1949) 68-76
46. Harpending H. Race: population genetics perspective. In: Pagel M. (Ed). Encyclopedia of Evolution (2002), Oxford University Press, New York 979-981
47. Hennig W. Phylogenetic Systematics (1966), University of Illinois Press, Urbana, IL
48. Hinds D.A., Kloek A.P., Jen M., Chen X., and Frazer K.A. Common deletions and SNPs are in linkage disequilibrium in the human genome. Nature Genetics 38 (2006) 82-85
49. Ibrahim M.E., Lambson B., Yousif A.O., Deifalla N.S., Alnaiem D.A., Ismail A., Yousif H., Ghalib H.W., Khalil E.A., Kadaro A., Barker D.C., and El Hassan A.M. Kala-azar in a high transmission focus: an ethnic and geographic dimension. American Journal of Tropical Medicine and Hygiene 61 (1999) 941-944
50. International Hap Map Consortium (2003). The international Hap Map project. Nature 426, 789-796.
51. Ioannidis J.P.A., Bernstein J., Boffetta P., Danesh J., Dloan S., Harteg P., Hunter D., Inskip P., Jarvelin M.R., Little J., Maraganore D.M., Bishop J.A.N., O'Brien T.R., Petersen G., Riboli E., Seminara D., Taioli E., Uitterlindenb A.G., Vineis P., Winn D.M., Salanti G., Higgins J.P.T., and Khoury M.J. A network of investigator networks in human genome epidemiology. American Journal of Epidemiology 162 (2005) 302-304
52. Jaccard P. Nouvelles recherches sur la distribution florale. Bulletin de la Société Vaudoise de Sciences Naturelles 44 (1908) 223-270
53. Jorde L.B., and Wooding S.P. Genetic variation, classification and 'race'. Nature Genetics 36 supplement (2004) S28-S33
54. Kahn P. Genetic diversity project tries again. Science 266 (1994) 720-722
55. Kahn P. An African-American diversity project. Science 266 (1994) 721 [insert in Kahn, 1994a]
56. Keita S.O.Y., Kittles R.A., Royal C.D.M., Bonney G.E., Furbert-Harris P., Dunston G.M., and Rotimi C.N. Conceptualizing human variation. Nature Genetics 36 supplement (2004) S17-S20
57. Kierzenbaum F. Is there autoimmunity in Chagas disease?. Parasitology Today 1 (1985) 4-6
58. Labie D. Polymorphismes génétiques et développement du paludisme: au delà du cas de la drépanocytose. Médecine/Science 10 (1994) 905-906
59. Lafrate A.J., Feuk L., Rivera M.N., Listewnik M.L., Donahoe P.K., Qi Y., Scherer S.W., and Lee C. Detection of large-scale variation in the human genome. Nature Genetics 36 (2004) 949-951
60. Lent H., and Wygodzinsky P. Revision of the Triatominae (Hemiptera, Reduviidae), and their significance as vectors of Chagas disease. Bulletin of the American Museum of Natural History 163 (1979) 127-516
61. Marcet P.L., Lehmann T., Groner G., Gürtler R.E., Kitron U., and Dotson E.M. Identification and characterization of microsatellite markers in the Chagas disease vector Triatoma infestans (Heteroptera: Reduviidae). Infection, Genetics and Evolution 6 (2006) 32-37
62. Miller L.H. Impact of malaria on genetic polymorphism and genetic diseases in Africans and African Americans. Proceedings of the National Academy of Sciences of the USA 91 (1994) 2415-2419
63. Modiano D., Chiucchiuini A., Petrarca V., Sirima B.S., Luoni G., Roggero M.A., Corradin G., Coluzzi M., and Esposito F. Interethnic differences in the humoral response to non-repetitive regions of the Plasmodium falciparum circumsporozoite protein. American Journal of Tropical Medicine and Hygiene 61 (1999) 663-667
64. Morini J.C., Berra H., Davila H.O., Pividori J.F., and Bottasso O.A. Electrocardiographic alteration among first degree relatives with serological evidence of Trypanosoma cruzi infection. A sibship study. Memorias do Instituto Oswaldo Cruz, 89 (1994) 371-375
65. Morton N.E. Sequential tests for the detection of linkage. American Journal of Human Genetics 7 (1955) 277-318
66. Nei M. Genetic distance between populations. American Naturalist 106 (1972) 283-292
67. Nei M. The theory of genetic distance and evolution of human races. Japanese Journal of Human Genetics 23 (1978) 341-369
68. Nei M., and Roychoudhury A.K. Genetic variation within and between the three major races of man, Caucasoids, Negroids and Mongoloids. American Journal of Human Genetics 26 (1974) 421-443
69. Nei M., and Roychoudhury A.K. Evolutionary relationships in human populations on a global scale. Molecular Biology and Evolution 10 (1993) 927-943
70. Newman T.L., Tuzun E., Morrison .A., Hayden K.E., Ventura M., McGrath S.D., Rocchi M., and Eichler E.E. A genome-wide survey of structural variation between human and chimpanzee. Genome Research 15 (2005) 1344-1356
71. Pfaff C.L., Parra E.J., Bonilla C., Hiester K., McKeigue P.M., Kamboh M.I., Hutchinson R.G., Ferrell R.E., Boerwinkle E., and Shriver M.D. Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium. American Journal of Human Genetics 68 (2001) 198-207
72. Poulet, S. (1994). Organisation Génomique de Mycobacterium tuberculosis et Epidémiologie Moléculaire de la Tuberculose. Ph.D. dissertation, University of Paris 6.
73. Rotini C.N. Are medical and nonmedical uses of large-scale genomic markers conflating genetics and 'race'?. Nature Genetics 36 supplement (2004) S43-S47
74. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
75. Samson M., Libert F., Doranz B.J., Rucker J., Liesnard C., Farber C.M., Saragosti S., Lapoumeroulie C., Cogneaux J., Forceille C., Muyldermans G., Verhofstede C., Burtonboy G., Georges M., Imai T., Rana S., Yi Y., Smyth R.J., Collman R.G., Doms R.W., Vassart G., and Parmentier M. Resistance to HIV-1 infection in Caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene. Nature 382 (1996) 722-725
76. Sarich V., and Miele F. Race. The Reality of Human Differences (2004), Westview Press, Boulder, CO and Oxford, England
77. Sebat J., Lakshmi B., Troge J., Alexander J., Young J., Lundin P., Maner S., Massa H., Walker M., Chi M., Navin N., Lucito R., Healy J., Hicks J., Ye K., Reiner A., Gilliam T.C., Trask B., Patterson N., Zetterberg A., and Wigler M. Large-scale copy number polymorphism in the human genome. Science 305 (2004) 525-528
78. Solignac M. Génétique, population et evolution. In: Feingold J., Fellous M., and Solignac M. (Eds). Principes de Génétique Humaine (1998), Hermann, Paris 511-558
79. Stefansson H., Helgason A., Thorleifsson G., Steinthorsdottir V., Masson G., Barnard J., Baker A., Jonasdottir A., Ingason A., Gudnadottir V.G., Desnica N., Hicks A., Gylfason A., Gudbjartsson D.F., Jonsdottir G.M., Sainz J., Agnarsson K., Birgisdottir B., Ghosh S., Olafsdottir A., Cazier J.-B., Kristjansson K., Frigge M.L., Thorgeirsson T.E., Gulcher J.R., Kong A., and Stefansson K. A common inversion under selection in Europeans. Nature Genetics 37 (2005) 129-137
80. Tang H. Confronting ethnicity-specific disease risk. Nature Genetics 38 (2006) 13-15
81. Tanner M.J., Bruce L., Martin P.G., Rearden D.M., and Jones G.L. Melanesian hereditary ovalocytes have a deletion in red cell band 3. Blood 78 (1991) 2785-2786
82. Thio C.L., Thomas D.L., Goedert J.J., Vlahov D., Nelson K.E., Hilgartner M.W., O'Brien S.J., Karacki P., Marti D., Astemborski J., and Carrington M. Racial differences in HLA class II associations with hepatitis C virus outcomes. Journal of Infectious Diseases 184 (2001) 16-21
83. Tibayrenc M. Population Genetics of Parasitic Protozoa and other Microorganisms. Advances in Parasitology 36 (1995) 47-115
84. Tibayrenc M. Genetic epidemiology of parasitic protozoa and other infectious agents: the need for an integrated approach. International Journal for Parasitology 28 (1998) 85-104
85. Tibayrenc M. Integrated genetic epidemiology of infectious diseases: the Chagas model. Memorias do Instituto Oswaldo Cruz 93 (1998) 577-580
86. Tibayrenc M. The golden age of genetics and the dark age of infectious diseases. Infection, Genetics and Evolution 1 (2001) 1-2
87. Tibayrenc M. Is integrated genetic epidemiology on the way? The MEEGID VI congress. Infection, Genetics and Evolution 2 (2002) 1
88. Tibayrenc M. Genetic subdivisions within Trypanosoma cruzi (Discrete Typing Units) and their relevance for molecular epidemiology and experimental evolution. Kinetoplastid Biology and Disease 2 (2003) 12-18
89. Tibayrenc M. The impact of human genetic diversity in the transmission and severity of infectious diseases. In: Dronamraju K. (Ed). Infectious Disease: Host-Pathogen Evolution (2004), Cambridge University Press, Cambridge 315-324
90. Tibayrenc M., and Ayala F.J. The clonal theory of parasitic protozoa: 12 years on. Trends in Parasitology 18 (2002) 405-410
91. Tibayrenc M., Ward P., Moya A., and Ayala F.J. Natural populations of Trypanosoma cruzi, the agent of Chagas' disease, have a complex multiclonal structure. Proceedings of the National Academy of Sciences of the USA 83 (1986) 115-119
92. Tishkoff S.A., and Kidd K.K. Implications of biogeography of human populations for "race" and medicine. Nature Genetics 36 supplement (2004) S21-S27
93. Toledo M.J.d.O., Bahia M.T., Carneiro C.M., Martins-Filho O.A., Tibayrenc M., Barnabé C., Tafuri W.L., and de Lana M. Chemotherapy with benznidazole and itraconazole for mice infected with different Trypanosoma cruzi clonal genotypes. Antimicrobial Agents and Chemotherapy 47 (2003) 223-230
94. Torroni A., Achilli A., Macaulay V., Richards M., and Bandelt H.J. Harvesting the fruit of the human mtDNA tree. Trends in Genetics 22 (2006) 339-345
95. Valois H.V. Les Races Humaines (1971), Presses Universitaires de France, Paris
96. Williams-Blangero S., VandeBerg J.L., Blangero J., and Teixera A.R.L. Genetic epidemiology of seropositivity for Trypanosoma cruzi infection in rural Goiás, Brazil. American Journal of Tropical Medicine and Hygiene 57 (1997) 538-543
97. Williams-Blangero S., VandeBerg J.L., Blangero J., and Corrêa-Oliveira R. Genetic epidemiology of Trypanosoma cruzi infection and Chagas disease. Frontiers in Bioscience 8 (2003) e337-e345
98. Wolf S.M. Are we making progress in the debate over racial and ethnic categories in biomedical research?. Nature Genetics 37 (2005) 789-790
99. Wright S. The genetical structure of populations. Annals of Eugenics 15 (1951) 323-354
100. Yu L., Li Q.W., Ryder O.A., and Zhanga Y.P. Phylogeny of the bears (Ursidae) based on nuclear and mitochondrial genes. Molecular Phylogenetics and Evolution 32 (2004) 480-494
101. Zicker F., Slith P.G., Netto J.C.A., Oliveira R.M., and Zicke E.M.S. Physical activity, opportunity for reinfection, and sibling history of heart diseases as risk factors for Chagas' cardiopathy. American Journal of Tropical Medicine and Hygiene 43 (1990) 498-505
102. Zijlstra E.E., el-Hassan A.M., Ismael A., and Ghalib H.W. Endemic kala-azar in eastern Sudan: a longitudinal study on the incidence of clinical and subclinical infection and post-kala-azar dermal leishmaniasis. American Journal of Tropical Medicine and Hygiene 51 (1994) 826-836