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Volumn 43, Issue 2, 2007, Pages 407-417

Molecular phylogeny and evolution of the order Tribonematales (Heterokonta, Xanthophyceae) based on analysis of plastidial genes rbcL and psaA

Author keywords

Molecular phylogeny; psaA; rbcL; Tribonematales; Xanthophyceae

Indexed keywords

ALGAL DNA; ALGAL PROTEIN; RBCL PROTEIN, PLASTID; RIBULOSEBISPHOSPHATE CARBOXYLASE; UNCLASSIFIED DRUG;

EID: 34247597777     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.02.014     Document Type: Article
Times cited : (13)

References (39)
  • 2
    • 84984087585 scopus 로고
    • Simple conditions for growth of unicellular blue-green algae on plates
    • Allen M.M. Simple conditions for growth of unicellular blue-green algae on plates. J. Phycol. 4 (1968) 1-4
    • (1968) J. Phycol. , vol.4 , pp. 1-4
    • Allen, M.M.1
  • 4
    • 0036073203 scopus 로고    scopus 로고
    • Phylogenetic analysis of 32 strains of Vaucheria (Xanthophyceae) using the rbcL gene and its two flanking region spacers
    • Andersen R.A., and Bailey J.C. Phylogenetic analysis of 32 strains of Vaucheria (Xanthophyceae) using the rbcL gene and its two flanking region spacers. J. Phycol. 38 (2002) 583-592
    • (2002) J. Phycol. , vol.38 , pp. 583-592
    • Andersen, R.A.1    Bailey, J.C.2
  • 5
    • 0032322015 scopus 로고    scopus 로고
    • Phylogenetic relationships among nine species of the Xanthophyceae inferred from rbcL and 18S rRNA gene sequences
    • Bailey J.C., and Andersen R.A. Phylogenetic relationships among nine species of the Xanthophyceae inferred from rbcL and 18S rRNA gene sequences. Phycologia 37 (1998) 466-485
    • (1998) Phycologia , vol.37 , pp. 466-485
    • Bailey, J.C.1    Andersen, R.A.2
  • 6
    • 0033036513 scopus 로고    scopus 로고
    • Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacers sequences
    • Bailey J.C., and Andersen R.A. Analysis of clonal cultures of the brown tide algae Aureococcus and Aureoumbra (Pelagophyceae) using 18S rRNA, rbcL and RUBISCO spacers sequences. J. Phycol. 35 (1999) 570-574
    • (1999) J. Phycol. , vol.35 , pp. 570-574
    • Bailey, J.C.1    Andersen, R.A.2
  • 7
    • 0031705695 scopus 로고    scopus 로고
    • Phaeothamniophyceae classis nova: a new lineage of chromophytes based upon photosynthetic pigments, rbcL sequence analysis and ultrastructure
    • Bailey J.C., Bidigare R.R., Christensen S.J., and Andersen R.A. Phaeothamniophyceae classis nova: a new lineage of chromophytes based upon photosynthetic pigments, rbcL sequence analysis and ultrastructure. Protist 149 (1998) 245-263
    • (1998) Protist , vol.149 , pp. 245-263
    • Bailey, J.C.1    Bidigare, R.R.2    Christensen, S.J.3    Andersen, R.A.4
  • 8
    • 0031399170 scopus 로고    scopus 로고
    • A comparison of strains of Xanthonema (=Heterothrix, Tribonematales, Xanthophyceae) from Antarctica, Europe, and New Zealand
    • Broady P.A., Ohtani S., and Ingerfeld M. A comparison of strains of Xanthonema (=Heterothrix, Tribonematales, Xanthophyceae) from Antarctica, Europe, and New Zealand. Phycologia 36 (1997) 164-171
    • (1997) Phycologia , vol.36 , pp. 164-171
    • Broady, P.A.1    Ohtani, S.2    Ingerfeld, M.3
  • 9
    • 33645004561 scopus 로고    scopus 로고
    • A mtDNA-based phylogeny of the brown algal genus Fucus (Heterokontophyta; Phaeophyta)
    • Coyer J.A., Hoarau G., Oudot-Le Secq M.-P., Stam W.T., and Olsen J.L. A mtDNA-based phylogeny of the brown algal genus Fucus (Heterokontophyta; Phaeophyta). Mol. Phyl. Evol. 39 (2006) 209-222
    • (2006) Mol. Phyl. Evol. , vol.39 , pp. 209-222
    • Coyer, J.A.1    Hoarau, G.2    Oudot-Le Secq, M.-P.3    Stam, W.T.4    Olsen, J.L.5
  • 10
    • 0030830235 scopus 로고    scopus 로고
    • Phylogenetic analyses of the rbcL sequences from Haptophytes and Heterokont algae suggest their chloroplasts are unrelated
    • Daugbjerg N., and Andersen R.A. Phylogenetic analyses of the rbcL sequences from Haptophytes and Heterokont algae suggest their chloroplasts are unrelated. Mol. Biol. Evol. 14 (1997) 1242-1251
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1242-1251
    • Daugbjerg, N.1    Andersen, R.A.2
  • 11
    • 0030765364 scopus 로고    scopus 로고
    • Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum
    • Ehara M., Hayashi-Ishimaru Y., Inagaki Y., and Ohama T. Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum. J. Mol. Evol. 45 (1997) 119-124
    • (1997) J. Mol. Evol. , vol.45 , pp. 119-124
    • Ehara, M.1    Hayashi-Ishimaru, Y.2    Inagaki, Y.3    Ohama, T.4
  • 12
    • 0003351638 scopus 로고
    • Xanthophyceae
    • Ettl H., Gerloff J., and Heynig H. (Eds), Gustav Fischer Verlag, Stuttgart
    • Ettl H. Xanthophyceae. In: Ettl H., Gerloff J., and Heynig H. (Eds). Süsswasserflora von Mitteleuropa, Bd. 3. 1. Teil (1978), Gustav Fischer Verlag, Stuttgart 1-530
    • (1978) Süsswasserflora von Mitteleuropa, Bd. 3. 1. Teil , pp. 1-530
    • Ettl, H.1
  • 14
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 34247597067 scopus 로고    scopus 로고
    • Felsenstein, J., 2004. Inferring Phylogenies. Sinauer, Sunderland, MA.
  • 16
    • 0012442740 scopus 로고
    • Phylum Xanthophyta
    • Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds), Jones and Bartlett, Boston
    • Hibberd D.J. Phylum Xanthophyta. In: Margulis L., Corliss J.O., Melkonian M., and Chapman D.J. (Eds). Handbook of Protoctista (1990), Jones and Bartlett, Boston 686-697
    • (1990) Handbook of Protoctista , pp. 686-697
    • Hibberd, D.J.1
  • 17
    • 24244461763 scopus 로고
    • Culture collection of algae at Laboratory of Algology in Třeboň
    • Hindák F. Culture collection of algae at Laboratory of Algology in Třeboň. Arch. Hydrobiol./Suppl.39, Algological Studies 2/3 (1970) 86-126
    • (1970) Arch. Hydrobiol./Suppl.39, Algological Studies , vol.2-3 , pp. 86-126
    • Hindák, F.1
  • 18
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave C., Preparata G., Saccone C., and Serio G. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20 (1984) 86-93
    • (1984) J. Mol. Evol. , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 19
    • 0344432092 scopus 로고    scopus 로고
    • Molecular phylogenetics of Meliaceae (Sapindales) based on nuclear and plastid DNA sequences
    • Muellner A.N., Samuel R., Johnson S.A., Cheek M., Pennington T.D., and Chase M.W. Molecular phylogenetics of Meliaceae (Sapindales) based on nuclear and plastid DNA sequences. Am. J. Bot. 90 (2003) 471-480
    • (2003) Am. J. Bot. , vol.90 , pp. 471-480
    • Muellner, A.N.1    Samuel, R.2    Johnson, S.A.3    Cheek, M.4    Pennington, T.D.5    Chase, M.W.6
  • 20
    • 4344659808 scopus 로고    scopus 로고
    • Morphological convergence characterizes the evolution of Xanthophyceae (Heterokontophyta): evidence from nuclear SSU rDNA and plastidial rbcL genes
    • Negrisolo E., Maistro S., Moro I., Incarbone M., Dalla Valle L., Broady P.A., and Andreoli C. Morphological convergence characterizes the evolution of Xanthophyceae (Heterokontophyta): evidence from nuclear SSU rDNA and plastidial rbcL genes. Mol. Phyl. Evol. 33 (2004) 156-170
    • (2004) Mol. Phyl. Evol. , vol.33 , pp. 156-170
    • Negrisolo, E.1    Maistro, S.2    Moro, I.3    Incarbone, M.4    Dalla Valle, L.5    Broady, P.A.6    Andreoli, C.7
  • 23
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 24
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • Rokas A., and Carroll S.B. More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 22 (2005) 1337-1344
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1337-1344
    • Rokas, A.1    Carroll, S.B.2
  • 25
    • 0242365676 scopus 로고    scopus 로고
    • Genome scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A., Williams B.L., King K., and Carroll S.B. Genome scale approaches to resolving incongruence in molecular phylogenies. Nature 425 (2003) 798-804
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, K.3    Carroll, S.B.4
  • 26
    • 0028036109 scopus 로고    scopus 로고
    • Schlösser, U.G., 1994. SAG- Sammlung von Algenkulturen at the University of Göttingen. Catalog of strains 1994. Bot. Acta 107, 111-186.
  • 27
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 28
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51 (2002) 492-508
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 29
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., and Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001) 1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 30
    • 0018402970 scopus 로고
    • Review of the taxonomic history and nomenclature of the yellow-green algae
    • Silva P.C. Review of the taxonomic history and nomenclature of the yellow-green algae. Arch. Protistenk. 121 (1979) 20-63
    • (1979) Arch. Protistenk. , vol.121 , pp. 20-63
    • Silva, P.C.1
  • 31
    • 85032070461 scopus 로고
    • UTEX-the culture collection of algae at the University of Texas at Austin
    • Starr R.C., and Zeikus J.A. UTEX-the culture collection of algae at the University of Texas at Austin. J. Phycol. 29 suppl. (1993) 1-106
    • (1993) J. Phycol. , vol.29 , Issue.SUPPL , pp. 1-106
    • Starr, R.C.1    Zeikus, J.A.2
  • 32
    • 0031002417 scopus 로고    scopus 로고
    • Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment
    • Strimmer K., and von Haeseler A. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94 (1997) 6815-6819
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6815-6819
    • Strimmer, K.1    von Haeseler, A.2
  • 33
    • 34247605253 scopus 로고    scopus 로고
    • * and other methods). Version 4.10. Sinauer, Sunderland, MA.
  • 34
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer, Sunderland, MA
    • Swofford D.L., Olsen G.J., Wadell P.J., and Hillis D.M. Phylogenetic inference. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics (1996), Sinauer, Sunderland, MA 407-514
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Wadell, P.J.3    Hillis, D.M.4
  • 35
    • 0033854992 scopus 로고    scopus 로고
    • Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used
    • Takahashi K., and Nei M. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Mol. Biol. Evol. 17 (2000) 1251-1258
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1251-1258
    • Takahashi, K.1    Nei, M.2
  • 36
    • 0027968068 scopus 로고
    • CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 39
    • 23244438327 scopus 로고    scopus 로고
    • Molecular phylogeny of the genus Tribonema (Xanthophyceae) using rbcL gene sequence data: monophyly of morphologically simple algal species
    • Zuccarello G.C., and Lokhorst G.M. Molecular phylogeny of the genus Tribonema (Xanthophyceae) using rbcL gene sequence data: monophyly of morphologically simple algal species. Phycologia 44 (2005) 384-392
    • (2005) Phycologia , vol.44 , pp. 384-392
    • Zuccarello, G.C.1    Lokhorst, G.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.