Phaeothamniophyceae classis nova: A new lineage of chromophytes based upon photosynthetic pigments, rbcL sequence analysis and ultrastructure

Protist

Volumn 149, Issue 3, 1998, Pages 245-263

  Bailey, J Craig ^a   Bidigare, Robert R ^b   Christensen, Stephanie J ^b   Andersen, Robert A ^a  

^a BIGELOW LABORATORY FOR OCEAN SCIENCES   (United States)

^b UNIVERSITY OF HAWAII   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA CAROTENE; CELL WALL; CHLOROPHYLL; DIADINOXANTHIN; DIATOXANTHINE; ELECTRON MICROSCOPY; FUCOXANTHIN; HETEROXANTHIN; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; PHOTOSYNTHESIS; PHYLOGENY; PIGMENT; PLANT GENETICS; PLASTID; SEQUENCE ANALYSIS; TAXONOMY;

ALGAE; CHROMOPHYTA; CHRYSAPION; CHRYSOCLONIUM; CHRYSODICTYON; CHRYSOPHYCEAE; EUKARYOTA; PHAEOBOTRYS; PHAEOGLOEA; PHAEOPHYCEAE; PHAEOSCHIZOCHLAMYS; PHAEOTHAMNIALES; PHAEOTHAMNION; PHAEOTHAMNIOPHYCEAE; PLEUROCHLORIDELLA; PLEUROCHLORIDELLALES; SELENOPHAEA; SPHAERIDIOTHRIX; STICHOGLOEA; TETRACHRYSIS; TETRAPION; TETRASPOROPSIS; XANTHOPHYCEAE;

EID: 0031705695     PISSN: 14344610     EISSN: None     Source Type: Journal    
DOI: 10.1016/s1434-4610(98)70032-x     Document Type: Article

References (100)

1. Andersen RA (1985) The flagellar apparatus of the golden alga Synura uvella: four absolute orientations. Protoplasma 128: 94-106
2. Andersen RA (1987) The Synurophyceae classis nov., a new class of algae. Am J Bot 74: 337-353
3. Andersen RA (1989) Absolute orientation of the flagellar apparatus of Hibberdia magna comb. nov. (Chrysophyceae). Nord J Bot 8:653-669
4. Andersen RA (1990) The three-dimensional structure of the flagellar apparatus of Chrysophaerella brevispina (Chrysophyceae) as viewed by high voltage electron microscopy stereo pairs. Phycologia 29: 86-97
5. Andersen RA (1991) The cytoskeleton of chromophyte algae. Protoplasma 164: 143-159
6. Andersen RA, Morton SL, Sexton JP (1997) CCMP - Provasoli-Guillard National Center for Culture of Marine Phytoplankton - List of Strains. J Phycol 33(suppl.): 1-75
7. Andersen RA, Potter D, Bidigare RR, Latasa M, Rowan K, O'Kelly CJ (1998) Characterization and phylogenetic position of the enigmatic golden alga Phaeothamnion confervicola: ultrastructure, pigment composition and partial SSU rDNA sequence. J Phycol 34: 286-298
8. Andersen RA, Saunders GW, Paskind MP, Sexton JP (1993) Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov. J Phycol 29: 701-715
9. Andrews HT (1970) Morphology and taxonomy of the euryhaline chrysophyte, Sphaeridiothrix compressa. J Phycol 6: 133-136
10. Bjornland T, Liaaen-Jensen S (1989) Distribution patterns of carotenoids in relation to chromophyte phylogeny and systematics. In Green JC, Leadbeater BSC, Diver WL (eds) The Chromophyte Algae, Problems and Perspectives. Systematics Association Special Volume No. 38, Clarendon Press, Oxford, pp 37-60
11. Bouck GB (1972) Architecture and assembly of mastigonemes. In DuPraw EJ (ed) Advances in Cell and Molecular Biology, Vol. 2. Academic Press, New York, pp 237-271
12. Bourrelly P (1954) Phylogénie and Systématique des Chrysophyées. VIII Congr Int Bot 17: 118
13. Bourrelly P (1957) Recherches sur les Chrysophycées. Morphologie, Phylogénie, Systematique. Rev Algol Mém Hors Ser 1: 1-412
14. Bourrelly P (1981) Les Algues d'Eau Douce. II. Les Algues jaunes et brunes. Société Nouvelle des Éditions Boubée, Paris
15. Brawley SH, Wetherbee R, Quatrano RS (1976) Fine-structural studies on the gametes and embryo of Fucus vesiculosus L. II. The cytoplasm of the egg and young zygote. J Cell Sci 20: 255-271
16. Cavalier-Smith T, Chao EE, Allsopp MTEP (1995) Ribosomal RNA evidence for chloroplast loss in the Heterokonta: pedinellid relationships and a revised classification of ochristan algae. Arch Protistenkd 145: 209-220
17. Christensen T (1962) Alger. In Böcher TW, Lange MC, Sørensen T (eds) Botanik, Bd. 2. Systematisk Botanik Nr. 2. Munksgaard, Copenhagen, pp 1-178
18. Chodat R (1897) Études de biologie lacustre. Recherches sur les algues pélagiques de quelques lacs suisses et français. Bull Herb Boissier 5: 289-314
19. Chodat R (1898) Études de biologie lacustre. Recherches sur les algues littorales. Bull Herb Boissier 6: 155-188
20. Chodat R (1922) Matériaux pour l'histoire des Algues de la Suisse, I-IX. Bull Soc Bot Genève 13: 66-114
21. Chodat R (1931) Sur quelques algues nouvelles du plancton du lac de Genéve. Recueil de Travaux Cryptogamiques dédiés à Louis Mangin. Muséum National d'Histoire Naturelle Paris, pp 1-11
22. Clayton MN (1989) Brown algae and chromophyte phylogeny. In Green JC, Leadbeater BSC, Diver WL (eds) The Chromophyte Algae: Problems and Perspectives. Systematics Association Special Volume No. 38 Clarendon Press, Oxford, pp 229-253
23. Conrad W (1914) Contribution à l'étude des Flagellates II. Thallochrysis pascheri n. g. n. sp. type d'une familie nouvelle (Thallochrysidaceae nob.) de Chrysomonadines. Ann Biol Lacustre 7: 126-152
24. Craigie JS (1974) Storage Products. In Stewart WDP (ed) Algal Physiology and Biochemistry. Univ Calif Press, Berkeley, pp 206-235
25. Daugbjerg N, Andersen RA (1997a) Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated. Mol Biol Evol 14: 1242-1251
26. Daugbjerg N, Andersen RA (1997b) A molecular phylogeny of the heterokont algae based on analyses of chloroplast-encoded rbcL sequence data. J Phycol 33: 1031-1041
27. De Toni JB (1895) Sylloge Algarum. Vol. 3: Fucoideae (privately published) Padova, xvi-638 pp
28. Dop AJ (1978) Systematics and morphology of Chrysochaete brittanica (Godward) Rosenberg and Phaeoplaca thallosa Chodat (Chrysophyceae). Acta Bot Neerl 27: 35-60
29. Dop AJ (1980) Benthic Chrysophyceae of The Netherlands. Ph.D. thesis, Vrije Universiteit, Amsterdam
30. Dop AJ, Van Oers F (1979) On the taxonomic position of Phaeobotrys solitaria Ettl (Chrysophyceae). Acta Bot Neerl 28: 459-466
31. Dop AJ, Kosterman Y, Van Oers F (1980) Coccoid and palmelloid benthic Chrysophyceae from the Netherlands. Acta Bot Neerl 29: 87-102
32. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15
33. Entwisle TJ, Andersen RA (1990) A re-examination of Tetrasporopsis (Chrysophyceae) and the description of Dermatochrysis gen. nov. (Chrysophyceae): a monostromatic alga lacking cell walls. Phycologia 29: 263-274
34. Ettl H (1956) Ein Beitrag zur Systematik der Heterkonten. Bot Notiser 109: 411-445
35. Ettl H (1959) Heterodendron Steinecke, eine Chrysophycee? Nova Hedwigia 1: 19-23
36. Ettl H (1966) Phaeobotrys solitaria, eine neue coccale Chrysophyceae. Rev Algol N.S. 8: 211-214
37. Evans LV, Holligan MS (1972) Correlated light and electron microscopic studies on brown algae II. Physode production in Dictyota. New Phytol 71: 1173-1180
38. Farris JS (1969) A successive approximation approach to character weighting. Syst Zool 18: 374-385
39. Farris JS (1988) Hennig86, v. 1.5. Published by the author, Port Jefferson Station, New York
40. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
41. Gilbert D (1994) SeqApp, v. 1.9a169, available via anonymous ftp at ftp.bio.indiana.edu
42. Godward MB (1933) Contributions to our knowledge of British algae. III, IV. J Bot 71: 33-44
43. Hansgirg A (1886) Prodromus der Algenflora von Böhmen, I und II. Arch Nat Landesdurchforschung in Böhmen, 5, No. 6
44. Hasegawa M. Kishino H, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174
45. Henry EC, Cole KM (1982a) Ultrastructure of swarmers in the Laminariales (Phaeophyceae). I. zoopsores. J Phycol 18: 550-569
46. Henry EC, Cole KM (1982b) Ultrastructure of swarmers in the Laminariales (Phaeophyceae). II. sperm. J Phycol 18: 570-579
47. Hibberd DJ (1975) Observations on the ultrastructure of the choanoflagellate Codosiga botrytis (Ehr.) Saville-Kent with special reference to the flagellar apparatus. J Cell Sci 17: 191-219
48. Hibberd DJ (1976) The ultrastructure and taxonomy of the Chrysophyceae and Prymnesiophyceae (Haptophyceae): a survey with some new observations of the ultrastructure of the Chrysophyceae. Bot J Linn Soc 72: 55-80
49. Hibberd DJ (1977) The cytology and ultrastructure of Chrysonebula holmesii Lund (Chrysophyceae), with special reference to the flagellar apparatus. Br phycol J 12: 369-383
50. Hibberd DJ (1979) The structure and phylogenetic significance of the flagellar transition region in the chlorophyll c-containing algae. BioSystems 11: 243-261
51. Hibberd DJ, Leedale GF (1971) Cytology and ultrastructure of the Xanthophyceae. II. The zoospore and vegetative cell of coccoid forms, with special reference to Ophiocytium majus Naegeli. Br phycol J 6: 1-23
52. Hoffman LR, Vesk M, Pickett-Heaps JD (1986) The cytology and ultrastructure of zoospores of Hydrurus foetidus (Chrysophyceae). Nord J Bot 6: 105-122
53. Kützing FT (1849) Species Algarum. FA Brockhaus, Leipzig vi-922 pp
54. Lagerheim G (1884) Über Phaeothamnion, eine neue Gattung unter den Süsswasseralgen. Bihang Till K Svenska Vet-Acad Handlingar 9 (19): 3-13
55. Latasa M, Bidigare RR, Ondrusek ME, Kennicutt II M C (1996) HPLC analysis of algal pigments: A comparison exercise among laboratories and recommendations for improved analytical performance. Marine Chemistry 51: 315-324
56. Lemmermann E (1898) Algologische Beiträge, IV. Süsswasseralgen der Insel Wangerooge. Abh Natur Ver Bremen 14: 501-512
57. Lemmermann E (1899) Das Phytoplankton sächsischer Teiche. Forschber Biol Stat Plön 7: 96-140
58. Lund JWG (1960) Some new or rare Chrysophyceae from the English Lake District. Hydrobiologia 16: 97-108
59. Maddison WP, Maddison DR (1992) MacClade: Analysis of phylogeny and character evolution, version 3.04. Sinauer, Sunderland, Massachusetts
60. Magne F (1975) Contribution a la connaissance de Stichogloeacées (Chrysophycées, Stichogloeales). Cah Biol Mar 16: 531-539
61. Meeuse BJD (1962) Storage Products. In Lewin RA (ed) Physiology and Biochemistry of Algae. Acad Press, New York, pp 289-313
62. Mesquita JF, Santos MF (1976) Études cytologiques sur les algues jaunes (Chrysophyceae). I. Ultrastructure de Chrysocapsa epiphytica Lund Bol Soc Brot 50: 63-98
63. Meyer K (1930) Einige neue Algenformen des Baikalsees. Arch Protistenk 72: 158-175
64. Norris RE (1961) Observations on phytoplankton organisms collected on the N.Z.O.I. Pacific cruise, September 1958. N Z J Sci 4: 162-188
65. Norris RE (1977) Flagellate cells in the life-history of Stichogloea (Chrysophyceae). Phycologia 16: 75-78
66. O'Kelly CJ (1989a) Reconstruction from serial sections of Heterococcus tectiformis (Tribophyceae = Xanthophyceae) zoospores, with emphasis on the flagellar apparatus. Crypt Bot 1: 58-69
67. O'Kelly CJ (1989b) The evolutionary origin of the brown algae: information from studies of motile cell ultrastructure. In Green JC, Leadbeater BSC, Diver WL (eds) The Chromophyte Algae: Problems and Perspectives. Systematics Association Special Volume No. 38, Clarendon Press, Oxford, pp 255-278
68. O'Kelly CJ, Floyd GL (1984) The absolute configuration of the flagellar apparatus in zoospores from two species of Laminariales (Phaeophyceae). Protoplasma 123: 18-25
69. Owen HA, Mattox KR, Stewart KD (1990) Fine structure of the flagellar apparatus of Dinobryon cylindricum (Chrysophyceae). J Phycol 26: 131-141
70. Pascher A (1914) Über Flagellaten und Algen. Ber Deutsch Bot Ges 32: 136-160
71. Pascher A (1925) Die braune Algenreihe der Chrysophyceen. Arch Protistenkd 52: 489-564
72. Pascher A (1939) Heterokonten. In Rabenhorst's Kryptogamenflora von Deutschland, Österreich und der Schweiz, Bd. 11, Akademische Verlagsgesellschaft, Leipzig, 1092 pp
73. Pascher A, Vlk W (1943) Zur Kenntnis der Chrysophyceen des salzhaltigen Flachmoores Hrabanow bei Lissa a. E. Lotos 88: 163-177
74. Peters MC, Andersen RA (1993) The flagellar apparatus of Chrysolepidomonas dendrolepidota (Chrysophyceae), a single-celled monad covered with organic scales. J Phycol 29: 476-485
75. Potter D, LaJeunesse, TC, Saunders GW, Andersen RA (1997a) Convergent evolution masks extensive biodiversity among marine coccoid picoplankton. Biodiversity and Conservation 6: 99-107
76. Potter D, Saunders GW, Andersen RA (1997b) Phylogenetic relationships of the Raphidophyceae and Xanthophyceae as inferred from nucleotide sequences of the 18S ribosomal RNA gene. Am J Bot 84: 966-972
77. Preisig HR (1989) The flagellar base ultrastructure and phylogeny of chromophytes. In Green JC, Leadbeater BSC, Diver WL (eds) The Chromophyte Algae: Problems and Perspectives. Systematics Association Special Volume No. 38, Clarendon Press, Oxford, pp 167-187
78. Preisig HR (1995) A modern concept of chrysophyte classification. In Sandgren CD, Smol JP, Kristiansen J (eds) Chrysophyte Algae: Ecology, Phylogeny and Development. Cambridge Univ Press, Cambridge, pp 46-74
79. Ramanathan KR (1946) Chrysodictyon indicum gen. et sp. nov., a new member of the Chrysophyceae from south India. J Indian Bot Soc 25: 185-189
80. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
81. Sandgren CD (1980) Resting cyst formation in selected chrysophyte flagellates: an ultrastructural survey including a proposal for the phylogenetic significance of interspecific variations in the encystment process. Protistologica 16: 289-303
82. Saunders GW (1993) Gel purification of red algal genomic DNA: an inexpensive and rapid method for the isolation of polmerase chain reaction-friendly DNA. J Phycol 29: 251-254
83. Saunders GW, Potter D, Paskind, MP, Andersen RA (1995) Cladistic analyses of combined traditional and molecular data sets reveal an algal lineage. Proc Natl Acad Sci USA 92: 244-248
84. Saunders GW, Potter D, Andersen RA (1997) Phylogenetic affinities of the Sarcinochrysidales and Chrysomeridales (Heterokonta) based on analyses of molecular and combined data. J Phycol 33: 310-318
85. Schmidle W (1902) Notizen zu einigen Süsswasseralgen. Hedwigia 41: 150-163
86. Silva PC (1980) Names of classes and families of living algae. Regnum Vegetabile 103: 1-156
87. Skuja H (1948) Taxonomy des Phytoplanktons einiger Seen in Uppland, Schweden. Symbolae Botanicae Upsalienses 9: 1-397
88. Skuja H (1956) Taxonomische und biologische Studien über das Phytoplankton schwedischer Binnengewässer. Nova Acta Regiae Societatis Scientiarum Upsaliensis, Ser. IV, 16(3): 1-404
89. Skuja H (1964) Grundzüge der Algenflora und Algenvegetation der Fjeldgegenden um Abisko in Schwedisch-Lappland. Nova Acta Regiae Societatis Scientiarum Upsaliensis, Ser. IV, 18(3): 1-465
90. Starmach K (1970) Chrysodesmis gloeophila, a new genus and species of Chrysophyceae. Acta Hydrobiol 12: 191-196
91. Starmach K (1972) Stichogloea globosa n. sp. (Chrysophyceae). Bull Acad Pol Sci Cl II Sci Biol 20: 677-679
92. Starmach K (1985) Chrysophyceae und Haptophyceae. In Ettl H, Gerloff J, Heynig H, Mollenhauer D (eds) Süsswasserflora von Mitteleuropa Band 1, Gustav Fischer Verlag, Stuttgart, pp 1-515
93. Starr RC, Zeikus JA (1993) UTEX - The Culture Collection of Algae at the University of Texas at Austin. J Phycol 29 (suppl.): 1-106
94. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526
95. Strain HH, Benton F, Grandolf MC, Aitzetmuller K, Svec WA, Katz JJ (1970) Heteroxanthin, diatoxanthin and diadinoxanthin from Tribonema aequale. Phytochemistry 9: 2561-2565
96. Villeret S (1951) Quelques espèces d'algues d'eau douce nouvelles. Bull Soc Bot Fr 98: 37-40
97. West W (1892) Algae of the English Lake District. J Roy Microsc Soc London 1892: 713-748
98. Whitford LA (1943) The freshwater algae of North Carolina. J Elisha Mitchell Sci Soc 59: 131-170
99. Wille N (1910) Conjugatae und Chlorophyceae. In Engler A, Prantl K (eds) Die natürlichen Pflanzenfamilien, Nachträge zu 1, Teil, Abt. 2, Leipzig, pp 97-136
100. Wright SW, Jeffrey SW, Mantoura RFC, Llewellyn CA, Bjørnland T, Repeta D, Welschmeyer N (1991) Improved HPLC method for the analysis of chlorophylls and carotenoids from marine phytoplankton. Mar Ecol Prog Ser 77: 183-196