Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase

Biochemistry

Volumn 42, Issue 37, 2003, Pages 10931-10937

  Zhang, Chun Mei ^a   Perona, John J ^b   Hou, Ya Ming ^a  

^a THOMAS JEFFERSON UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACYLATION; AMINO ACIDS; CONFORMATIONS; CRYSTALLOGRAPHY; ESCHERICHIA COLI; SPECTROSCOPIC ANALYSIS;

METAL CENTER;

RNA;

ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATE; AMINO ACID; AMINO ACID TRANSFER RNA LIGASE; CYSTEINE; HISTIDINE DERIVATIVE; IMIDAZOLE DERIVATIVE; METAL; THIOL DERIVATIVE; TRANSFER RNA; TRYPTOPHAN; ZINC ION;

AMINOACYLATION; ARTICLE; BINDING SITE; CONFORMATIONAL TRANSITION; CRYSTALLOGRAPHY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYME STRUCTURE; ENZYME SUBSTRATE; ESCHERICHIA COLI; GENETIC CONSERVATION; MUTANT; MUTATION; NONHUMAN; PRIORITY JOURNAL; RNA BINDING; SPECTROSCOPY;

ADENOSINE TRIPHOSPHATE; AMINO ACIDS; AMINO ACYL-TRNA SYNTHETASES; BINDING SITES; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; ESCHERICHIA COLI; HISTIDINE; IMIDAZOLES; KINETICS; LIGANDS; MODELS, MOLECULAR; MUTATION; PROTEIN BINDING; PROTEIN CONFORMATION; RNA, TRANSFER; ZINC;

ESCHERICHIA COLI; FELIS CATUS; NEGIBACTERIA;

EID: 0141653988     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi034812u     Document Type: Article

References (36)

1. Schimmel, P. R., and Soll, D. (1979) Annu. Rev. Biochem. 48, 601-648.
2. Cusack, S. (1997) Curr. Opin. Struct. Biol. 7, 881-889.
3. Ibba, M., and Soll, D. (2000) Annu. Rev. Biochem. 69, 617-650.
4. Freist, W. (1989) Biochemistry 28, 6787-6795.
5. Schmidt, E., and Schimmel, P. (1994) Science 264, 265-267.
6. Nureki, O., Vassylyev, D. G., Tateno, M., Shimada, A., Nakama, T., Fukai, S., Konno, M., Hendrickson, T. L., Schimmel, P., and Yokoyama, S. (1998) Science 280, 578-582.
7. Fukai, S., Nureki, O., Sekine, S., Shimada, A., Tao, J., Vassylyev, D. G., and Yokoyama, S. (2000) Cell 103, 793-803.
8. Cusack, S., Yaremchuk, A., and Tukalo, M. (2000) EMBO J. 19, 2351-2361.
9. Sankaranarayanan, R., Dock-Bregeon, A. C., Romby, P., Caillet, J., Springer, M., Rees, B., Ehresmann, C., Ehresmann, B., and Moras, D. (1999) Cell 97, 371-381.
10. Sankaranarayanan, R., Dock-Bregeon, A. C., Rees, B., Bovee, M., Caillet, J., Romby, P., Francklyn, C. S., and Moras, D. (2000) Nat. Struct. Biol. 7, 461-465.
11. Beuning, P. J., and Musier-Forsyth, K. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 8916-8920.
12. Schreier, A. A., and Schimmel, P. R. (1972) Biochemistry 11, 1582-1589.
13. Fersht, A. R., and Dingwall, C. (1979) Biochemistry 18, 1245-1249.
14. Newberry, K. J., Hou, Y. M., and Perona, J. J. (2002) EMBO J. 21, 2778-2787.
15. Zhang, C. M., Christian, T., Newberry, K. J., Perona, J. J., and Hou, Y. M. (2003) J. Mol. Biol. 327, 911-917.
16. Maret, W., and Vallee, B. L. (1993) Methods Enzymol. 226, 52-71.
17. Fersht, A. R., Ashford, J. S., Bruton, C. J., Jakes, R., Koch, G. L., and Hartley, B. S. (1975) Biochemistry 14, 1-4.
18. Cole, F. X., and Schimmel, P. R. (1970) Biochemistry 9, 480-489.
19. Hou, Y. M., Westhof, E., and Giege, R. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6776-6780.
20. Delagoutte, B., Moras, D., and Cavarelli, J. (2000) EMBO J. 19, 5599-5610.
21. Rould, M. A., Perona, J. J., Soll, D., and Steitz, T. A. (1989) Science 246, 1135-1142.
22. Bullock, T. L., Sherlin, L. D., and Perona, J. J. (2000) Nat. Struct. Biol. 7, 497-504.
23. Frugier, M., Moulinier, L., and Giege, R. (2000) EMBO J. 19, 2371-2380.
24. Christianson, D. W. (1991) Adv. Protein Chem. 42, 281-355.
25. Francklyn, C., Perona, J. J., Puetz, J., and Hou, Y. M. (2002) RNA 8, 1363-1372.
26. Sherlin, L. D., and Perona, J. J. (2003) Structure 11, 591-603.
27. Freist, W., Logan, D. T., and Gauss, D. H. (1996) Biol. Chem. Hoppe-Seyler 377, 343-356.
28. Freist, W., and Gauss, D. H. (1995) Biol. Chem. Hoppe-Seyler 376, 451-472.
29. Freist, W., and Gauss, D. H. (1995) Biol. Chem. Hoppe-Seyler 376, 213-224.
30. Cavarelli, J., Eriani, G., Rees, B., Ruff, M., Boeglin, M., Mitschler, A., Martin, F., Gangloff, J., Thierry, J. C., and Moras, D. (1994) EMBO J. 13, 327-337.
31. Hunt, J. A., Ahmed, M., and Fierke, C. A. (1999) Biochemistry 38, 9054-9062.
32. Harris, C. M., Derdowski, A. M., and Poulter, C. D. (2002) Biochemistry 41, 10554-10562.
33. Mechulam, Y., Schmitt, E., Maveyraud, L., Zelwer, C., Nureki, O., Yokoyama, S., Konno, M., and Blanquet, S. (1999) J. Mol. Biol. 294, 1287-1297.
34. Landro, J. A., and Schimmel, P. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2261-2265.
35. Outten, C. E., and O'Halloran, T. V. (2001) Science 292, 2488-2492.
36. Loftfield, R. B., and Vanderjagt, D. (1972) Biochem. J. 128, 1353-1356.