-
1
-
-
0037450771
-
Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria
-
Aphasizhev R., Aphasizhev I., Nelson R.E., Gao G.H., Simpson A.M., Kang X.D., Falick A.M., Sbicego S., and Simpson L. Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria. EMBO J. 22 (2003) 913-924
-
(2003)
EMBO J.
, vol.22
, pp. 913-924
-
-
Aphasizhev, R.1
Aphasizhev, I.2
Nelson, R.E.3
Gao, G.H.4
Simpson, A.M.5
Kang, X.D.6
Falick, A.M.7
Sbicego, S.8
Simpson, L.9
-
2
-
-
0037276124
-
A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components
-
Aphasizhev R., Aphasizheva I., Nelson R.E., and Simpson L. A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components. RNA 9 (2003) 62-76
-
(2003)
RNA
, vol.9
, pp. 62-76
-
-
Aphasizhev, R.1
Aphasizheva, I.2
Nelson, R.E.3
Simpson, L.4
-
3
-
-
0028902990
-
Structure of an RNA double helix including uracil-uracil base pairs in an internal loop
-
Baeyens K.J., De Bondt H.L., and Holbrook S.R. Structure of an RNA double helix including uracil-uracil base pairs in an internal loop. Nat. Struct. Biol. 2 (1995) 56-61
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 56-61
-
-
Baeyens, K.J.1
De Bondt, H.L.2
Holbrook, S.R.3
-
4
-
-
0022552305
-
Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA
-
Benne R., Van den Burg J., Brakenhoff J.P., Sloof P., Van Bloom J.H., and Tromp M.C. Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell 46 (1986) 819-826
-
(1986)
Cell
, vol.46
, pp. 819-826
-
-
Benne, R.1
Van den Burg, J.2
Brakenhoff, J.P.3
Sloof, P.4
Van Bloom, J.H.5
Tromp, M.C.6
-
5
-
-
0035878980
-
Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata: gBP27, a novel protein, and gBP29, the orthologue of Trypanosoma brucei gBP21
-
Blom D., Van den Burg J., Breek C.K., Speijer D., Muijsers A.O., and Benne R. Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata: gBP27, a novel protein, and gBP29, the orthologue of Trypanosoma brucei gBP21. Nucleic Acids Res. 29 (2001) 2950-2962
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2950-2962
-
-
Blom, D.1
Van den Burg, J.2
Breek, C.K.3
Speijer, D.4
Muijsers, A.O.5
Benne, R.6
-
6
-
-
0025293741
-
Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region
-
Blum B., and Simpson L. Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo(U) tail involved in recognition of the preedited region. Cell 62 (1990) 391-397
-
(1990)
Cell
, vol.62
, pp. 391-397
-
-
Blum, B.1
Simpson, L.2
-
7
-
-
0025189769
-
A model for RNA editing in kinetoplastid mitochondria: guide RNA molecules transcribed from maxicircle DNA provide the edited information
-
Blum B., Bakalara N., and Simpson L. A model for RNA editing in kinetoplastid mitochondria: guide RNA molecules transcribed from maxicircle DNA provide the edited information. Cell 60 (1990) 189-198
-
(1990)
Cell
, vol.60
, pp. 189-198
-
-
Blum, B.1
Bakalara, N.2
Simpson, L.3
-
8
-
-
3543012707
-
Crystallography and NMR System: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Crosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography and NMR System: A new software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Crosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
9
-
-
2142694377
-
The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity
-
Chen X., and Wolin S.L. The Ro 60 kDa autoantigen: insights into cellular function and role in autoimmunity. J. Mol. Med. 84 (2004) 232-239
-
(2004)
J. Mol. Med.
, vol.84
, pp. 232-239
-
-
Chen, X.1
Wolin, S.L.2
-
10
-
-
0027237286
-
Trypanosoma brucei minicircles encode multiple guide RNAs which can direct editing of extensively overlapping sequences
-
Corell R.A., Feagin J.E., Riley G.R., Strickland T., Guderian J.A., Myler P.J., and Stuart K. Trypanosoma brucei minicircles encode multiple guide RNAs which can direct editing of extensively overlapping sequences. Nucleic Acids Res. 21 (1993) 4313-4320
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4313-4320
-
-
Corell, R.A.1
Feagin, J.E.2
Riley, G.R.3
Strickland, T.4
Guderian, J.A.5
Myler, P.J.6
Stuart, K.7
-
11
-
-
9044232153
-
Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties
-
Corell R.A., Read L.K., Riley G.R., Nellissery J.K., Allen T.E., Kable M.L., Wachal M.D., Seiwert S.D., Myler P.J., and Stuart K. Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties. Mol. Cell. Biol. 16 (1996) 1410-1418
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 1410-1418
-
-
Corell, R.A.1
Read, L.K.2
Riley, G.R.3
Nellissery, J.K.4
Allen, T.E.5
Kable, M.L.6
Wachal, M.D.7
Seiwert, S.D.8
Myler, P.J.9
Stuart, K.10
-
13
-
-
0036298747
-
A new family of plant transcription factors displays a novel ssDNA-binding surface
-
Desveaux D., Allard J., Brisson N., and Sygusch J. A new family of plant transcription factors displays a novel ssDNA-binding surface. Nat. Struct. Biol. 9 (2002) 512-517
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 512-517
-
-
Desveaux, D.1
Allard, J.2
Brisson, N.3
Sygusch, J.4
-
14
-
-
0023672581
-
Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids
-
Feagin J.E., Shaw J.M., Simpson L., and Stuart K. Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids. Proc. Natl. Acad. Sci. USA 85 (1988) 539-543
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 539-543
-
-
Feagin, J.E.1
Shaw, J.M.2
Simpson, L.3
Stuart, K.4
-
15
-
-
0024279854
-
Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei
-
Feagin J.E., Abraham J.M., and Stuart K. Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei. Cell 53 (1988) 413-422
-
(1988)
Cell
, vol.53
, pp. 413-422
-
-
Feagin, J.E.1
Abraham, J.M.2
Stuart, K.3
-
16
-
-
0030739912
-
A three-dimensional working model for a guide RNA from Trypanosoma brucei
-
Hermann T., Schmid B., Heumann H., and Göringer H.U. A three-dimensional working model for a guide RNA from Trypanosoma brucei. Nucleic Acids Res. 25 (1997) 2311-2318
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2311-2318
-
-
Hermann, T.1
Schmid, B.2
Heumann, H.3
Göringer, H.U.4
-
17
-
-
21844452398
-
Characterization of the multiple transferable resistance repressor, MtrR, from Neisseria gonorrhoeae
-
Hoffmann K.M., Williams D., Shafer W.M., and Brennan R.G. Characterization of the multiple transferable resistance repressor, MtrR, from Neisseria gonorrhoeae. J. Bacteriol. 187 (2005) 5008-5012
-
(2005)
J. Bacteriol.
, vol.187
, pp. 5008-5012
-
-
Hoffmann, K.M.1
Williams, D.2
Shafer, W.M.3
Brennan, R.G.4
-
18
-
-
0028871926
-
Dali: a network tool for protein structure comparison
-
Holm L., and Sander C. Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20 (1995) 478-480
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
19
-
-
0041927730
-
Genomic organization of Trypanosoma brucei kinetoplast DNA minicircles
-
Hong M., and Simpson L. Genomic organization of Trypanosoma brucei kinetoplast DNA minicircles. Protist 154 (2003) 265-279
-
(2003)
Protist
, vol.154
, pp. 265-279
-
-
Hong, M.1
Simpson, L.2
-
20
-
-
0342614261
-
Translation of the edited mRNA for cytochrome b in trypanosome mitochondria
-
Horváth A., Berry E.A., and Maslov D.A. Translation of the edited mRNA for cytochrome b in trypanosome mitochondria. Science 287 (2000) 1639-1640
-
(2000)
Science
, vol.287
, pp. 1639-1640
-
-
Horváth, A.1
Berry, E.A.2
Maslov, D.A.3
-
21
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.-Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47 (1991) 110-119
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
23
-
-
0031013396
-
Trypanosoma brucei gBP21. An arginine-rich mitochondrial protein that binds to guide RNA with high affinity
-
Köller J., Müller U.F., Schmid B., Missel A., Kruft V., Stuart K., and Göringer H.U. Trypanosoma brucei gBP21. An arginine-rich mitochondrial protein that binds to guide RNA with high affinity. J. Biol. Chem. 272 (1997) 3749-3757
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 3749-3757
-
-
Köller, J.1
Müller, U.F.2
Schmid, B.3
Missel, A.4
Kruft, V.5
Stuart, K.6
Göringer, H.U.7
-
24
-
-
0026764513
-
Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei
-
Koslowsky D.J., Riley G.R., Feagin J.E., and Stuart K. Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei. Mol. Cell. Biol. 12 (1992) 2043-2049
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2043-2049
-
-
Koslowsky, D.J.1
Riley, G.R.2
Feagin, J.E.3
Stuart, K.4
-
25
-
-
21244500215
-
DNA-binding proteins of the Whirly family in Arabidopsis thaliana are targeted to the organelles
-
Krause K., Kilbienski I., Mulisch M., Rodiger A., Schafer A., and Krupinska K. DNA-binding proteins of the Whirly family in Arabidopsis thaliana are targeted to the organelles. FEBS Lett. 579 (2005) 3707-3712
-
(2005)
FEBS Lett.
, vol.579
, pp. 3707-3712
-
-
Krause, K.1
Kilbienski, I.2
Mulisch, M.3
Rodiger, A.4
Schafer, A.5
Krupinska, K.6
-
26
-
-
0344731365
-
The involvement of gRNA-binding protein gBP21 in RNA editing- an in vitro and in vivo analysis
-
Lambert L., Müller U.F., Souza A.E., and Göringer H.U. The involvement of gRNA-binding protein gBP21 in RNA editing- an in vitro and in vivo analysis. Nucleic Acids Res. 27 (1999) 1429-1436
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1429-1436
-
-
Lambert, L.1
Müller, U.F.2
Souza, A.E.3
Göringer, H.U.4
-
28
-
-
27444444127
-
Effects of RNA interference of Trypanosoma brucei structure-specific endonuclease-I on kinetoplastid DNA replication
-
Liu Y., Motyka S.A., and Englund P.T. Effects of RNA interference of Trypanosoma brucei structure-specific endonuclease-I on kinetoplastid DNA replication. J. Biol. Chem. 280 (2005) 35513-35520
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 35513-35520
-
-
Liu, Y.1
Motyka, S.A.2
Englund, P.T.3
-
29
-
-
0022973884
-
On the recognition of helical RNA by cobra venom V1 nuclease
-
Lowman H.B., and Draper D.E. On the recognition of helical RNA by cobra venom V1 nuclease. J. Biol. Chem. 261 (1986) 5396-5403
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 5396-5403
-
-
Lowman, H.B.1
Draper, D.E.2
-
30
-
-
28044460265
-
Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates
-
Lukeš J., Hashimi H., and Zíková A. Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates. Curr. Genet. 48 (2005) 277-299
-
(2005)
Curr. Genet.
, vol.48
, pp. 277-299
-
-
Lukeš, J.1
Hashimi, H.2
Zíková, A.3
-
31
-
-
0037154955
-
Editing machines: The complexities of trypanosome RNA editing
-
Madison-Antenucci S., and Hajduk S.L. Editing machines: The complexities of trypanosome RNA editing. Cell 108 (2002) 435-438
-
(2002)
Cell
, vol.108
, pp. 435-438
-
-
Madison-Antenucci, S.1
Hajduk, S.L.2
-
32
-
-
0026710969
-
The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing
-
Maslov D.A., and Simpson L. The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70 (1992) 459-467
-
(1992)
Cell
, vol.70
, pp. 459-467
-
-
Maslov, D.A.1
Simpson, L.2
-
33
-
-
0037079663
-
Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction
-
Müller U.F., and Göringer H.U. Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction. Nucleic Acids Res. 30 (2002) 447-455
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 447-455
-
-
Müller, U.F.1
Göringer, H.U.2
-
34
-
-
0035868965
-
Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21
-
Müller U.F., Lambert L., and Göringer H.U. Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21. EMBO J. 20 (2001) 1394-1404
-
(2001)
EMBO J.
, vol.20
, pp. 1394-1404
-
-
Müller, U.F.1
Lambert, L.2
Göringer, H.U.3
-
36
-
-
0026319199
-
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11 (1991) 281-296
-
(1991)
Proteins
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
-
37
-
-
0034812949
-
Four related proteins of the Trypanosoma brucei RNA editing complex
-
Panigrahi A.K., Schnaufer A., Carmean N., Igo R.P., Gygi S.P., Ernst N.L., Palazzo S.S., Weston D.S., Abersold R., Salavati R., and Stuart K. Four related proteins of the Trypanosoma brucei RNA editing complex. Mol. Cell. Biol. 21 (2001) 6833-6840
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6833-6840
-
-
Panigrahi, A.K.1
Schnaufer, A.2
Carmean, N.3
Igo, R.P.4
Gygi, S.P.5
Ernst, N.L.6
Palazzo, S.S.7
Weston, D.S.8
Abersold, R.9
Salavati, R.10
Stuart, K.11
-
38
-
-
0037379043
-
Identification of novel components of Trypanosoma brucei editosomes
-
Panigrahi A.K., Schnaufer A., Ernst N.L., Wang B., Carmean N., Salavati R., and Stuart K. Identification of novel components of Trypanosoma brucei editosomes. RNA 9 (2003) 484-492
-
(2003)
RNA
, vol.9
, pp. 484-492
-
-
Panigrahi, A.K.1
Schnaufer, A.2
Ernst, N.L.3
Wang, B.4
Carmean, N.5
Salavati, R.6
Stuart, K.7
-
39
-
-
0029157052
-
The secondary structure of guide RNA molecules from Trypanosoma brucei
-
Schmid B., Riley G.R., Stuart K., and Göringer H.U. The secondary structure of guide RNA molecules from Trypanosoma brucei. Nucleic Acids Res. 23 (1995) 3093-3102
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3093-3102
-
-
Schmid, B.1
Riley, G.R.2
Stuart, K.3
Göringer, H.U.4
-
40
-
-
0027942565
-
RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro
-
Seiwert S.D., and Stuart K. RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro. Science 266 (1994) 114-117
-
(1994)
Science
, vol.266
, pp. 114-117
-
-
Seiwert, S.D.1
Stuart, K.2
-
41
-
-
0029942430
-
Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing
-
Seiwert S.D., Heidemann S., and Stuart K. Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell 84 (1996) 831-841
-
(1996)
Cell
, vol.84
, pp. 831-841
-
-
Seiwert, S.D.1
Heidemann, S.2
Stuart, K.3
-
42
-
-
0024279904
-
Editing of kinteoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons
-
Shaw J.M., Feagin J.E., Stuart K., and Simpson L. Editing of kinteoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons. Cell 53 (1988) 401-411
-
(1988)
Cell
, vol.53
, pp. 401-411
-
-
Shaw, J.M.1
Feagin, J.E.2
Stuart, K.3
Simpson, L.4
-
44
-
-
0037371743
-
Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business
-
Simpson L., Sbicego S., and Aphasizhev R. Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business. RNA 9 (2003) 265-276
-
(2003)
RNA
, vol.9
, pp. 265-276
-
-
Simpson, L.1
Sbicego, S.2
Aphasizhev, R.3
-
45
-
-
1642580825
-
Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U insertion/deletion RNA editing
-
Simpson L., Aphasizhev R., Gao G., and Kang X. Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U insertion/deletion RNA editing. RNA 10 (2004) 159-170
-
(2004)
RNA
, vol.10
, pp. 159-170
-
-
Simpson, L.1
Aphasizhev, R.2
Gao, G.3
Kang, X.4
-
46
-
-
19344362237
-
Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity
-
Stein A.J., Fuchs G., Fu C., Wolin S.L., and Reinisch K.M. Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity. Cell 121 (2005) 529-539
-
(2005)
Cell
, vol.121
, pp. 529-539
-
-
Stein, A.J.1
Fuchs, G.2
Fu, C.3
Wolin, S.L.4
Reinisch, K.M.5
-
48
-
-
0025369691
-
Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA
-
Sturm N.R., and Simpson L. Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA. Cell 61 (1990) 879-884
-
(1990)
Cell
, vol.61
, pp. 879-884
-
-
Sturm, N.R.1
Simpson, L.2
-
50
-
-
13244257143
-
RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei
-
Vondrušková E., van den Burg J., Zíková A., Ernst N.L., Stuart K., Benne R., and Lukeš J. RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei. J. Biol. Chem. 280 (2005) 2429-2438
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 2429-2438
-
-
Vondrušková, E.1
van den Burg, J.2
Zíková, A.3
Ernst, N.L.4
Stuart, K.5
Benne, R.6
Lukeš, J.7
|