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Volumn , Issue , 2006, Pages 375-401

Biocomputation and the Analysis of Complex Data Sets in Nutritional Genomics

Author keywords

Biocomputation and complex data set analysis; Data sets in nutritional genomics; Diet gene interactions

Indexed keywords


EID: 34247099699     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/0471781797.ch17     Document Type: Chapter
Times cited : (3)

References (59)
  • 1
    • 1842483155 scopus 로고    scopus 로고
    • Nutritional genomics: The next frontier in the postgenomic era
    • J. Kaput and R. L. Rodriguez (2004). Nutritional genomics: The next frontier in the postgenomic era, Physiol. Genomics 16:166-177.
    • (2004) Physiol. Genomics , vol.16 , pp. 166-177
    • Kaput, J.1    Rodriguez, R.L.2
  • 3
    • 1842609791 scopus 로고    scopus 로고
    • Nutrigenomics and nutrigenetics
    • J. M. Ordovas and V. Mooser (2004). Nutrigenomics and nutrigenetics, Curr. Opin. Lipidol. 15:101-108.
    • (2004) Curr. Opin. Lipidol. , vol.15 , pp. 101-108
    • Ordovas, J.M.1    Mooser, V.2
  • 4
    • 21644464095 scopus 로고    scopus 로고
    • Genetic components of lactose intolerance and community frequency
    • author reply 1747
    • C. Buning, H. Schmidt, H. Lochs, and J. Ockenga (2004). Genetic components of lactose intolerance and community frequency, J. Bone Miner. Res. 19:1746; author reply 1747.
    • (2004) J. Bone Miner. Res , vol.19 , pp. 1746
    • Buning, C.1    Schmidt, H.2    Lochs, H.3    Ockenga, J.4
  • 6
    • 0034839364 scopus 로고    scopus 로고
    • Large-scale molecular screening for galactosemia alleles in a pan-ethnic population
    • M. Suzuki, C. West, and E. Beutler (2001). Large-scale molecular screening for galactosemia alleles in a pan-ethnic population, Hum. Genet. 109:210-215.
    • (2001) Hum. Genet. , vol.109 , pp. 210-215
    • Suzuki, M.1    West, C.2    Beutler, E.3
  • 7
    • 18144425491 scopus 로고    scopus 로고
    • Nutritional status in adolescents and young adults with screen-detected celiac disease
    • M. Haapalahti, P. Kulmala, T. J. Karttunen, et al. (2005). Nutritional status in adolescents and young adults with screen-detected celiac disease, J. Pediatr. Gastroenterol. Nutr. 40:566-570.
    • (2005) J. Pediatr. Gastroenterol. Nutr. , vol.40 , pp. 566-570
    • Haapalahti, M.1    Kulmala, P.2    Karttunen, T.J.3
  • 8
    • 5444258688 scopus 로고    scopus 로고
    • Genetic polymorphisms affecting the phenotypic expression of patients with molecularly defined familial hypercholesterolaemia
    • G. Miltiadous, M. Cariolou, and M. Elisaf (2004). Genetic polymorphisms affecting the phenotypic expression of patients with molecularly defined familial hypercholesterolaemia, Atherosclerosis 177:217.
    • (2004) Atherosclerosis , vol.177 , pp. 217
    • Miltiadous, G.1    Cariolou, M.2    Elisaf, M.3
  • 10
    • 17844373857 scopus 로고    scopus 로고
    • Genetics of Type 2 diabetes
    • I. Barroso (2005). Genetics of Type 2 diabetes, Diabet. Med. 22:517-535.
    • (2005) Diabet. Med. , vol.22 , pp. 517-535
    • Barroso, I.1
  • 11
    • 7044263120 scopus 로고    scopus 로고
    • Molecular mechanisms of insulin resistance that impact cardiovascular biology
    • C. C. Wang, M. L. Goalstone, and B. Draznin (2004). Molecular mechanisms of insulin resistance that impact cardiovascular biology, Diabetes 53:2735-2740.
    • (2004) Diabetes , vol.53 , pp. 2735-2740
    • Wang, C.C.1    Goalstone, M.L.2    Draznin, B.3
  • 12
    • 20444427948 scopus 로고    scopus 로고
    • Coronary heart disease and polymorphisms in genes affecting lipid metabolism and inflammation
    • F. Cambien (2005). Coronary heart disease and polymorphisms in genes affecting lipid metabolism and inflammation, Curr. Atheroscler. Rep. 7:188-195.
    • (2005) Curr. Atheroscler. Rep. , vol.7 , pp. 188-195
    • Cambien, F.1
  • 13
    • 2442587889 scopus 로고    scopus 로고
    • Breast cancer risk in premenopausal women is inversely associated with consumption of broccoli A source of isothiocyanates, but is not modified by GST genotype
    • C. B. Ambrosone, S. E. McCann, J. L. Freudenheim, et al. (2004). Breast cancer risk in premenopausal women is inversely associated with consumption of broccoli, a source of isothiocyanates, but is not modified by GST genotype, J. Nutr. 134:1134-1138.
    • (2004) J. Nutr. , vol.134 , pp. 1134-1138
    • Ambrosone, C.B.1    McCann, S.E.2    Freudenheim, J.L.3
  • 14
    • 11144240494 scopus 로고    scopus 로고
    • Molecular markers and prostate cancer prognosis
    • J. L. Chin and R. E. Reiter (2004). Molecular markers and prostate cancer prognosis, Clin. Prostate Cancer 3:157-164.
    • (2004) Clin. Prostate Cancer , vol.3 , pp. 157-164
    • Chin, J.L.1    Reiter, R.E.2
  • 15
    • 2142758146 scopus 로고    scopus 로고
    • Molecular profiling of prostate cancer
    • K. Huppi and G. V. Chandramouli (2004). Molecular profiling of prostate cancer, Curr. Urol. Rep. 5:45-51.
    • (2004) Curr. Urol. Rep. , vol.5 , pp. 45-51
    • Huppi, K.1    Chandramouli, G.V.2
  • 16
    • 0038000122 scopus 로고    scopus 로고
    • Molecular targets for green tea in prostate cancer prevention
    • V. M. Adhami, N. Ahmad, and H. Mukhtar (2003). Molecular targets for green tea in prostate cancer prevention, J. Nutr. 133:2417S-2424S.
    • (2003) J. Nutr , vol.133
    • Adhami, V.M.1    Ahmad, N.2    Mukhtar, H.3
  • 18
    • 0030688004 scopus 로고    scopus 로고
    • Variations on a theme: cataloging human DNA sequence variation
    • F. S. Collins, M. S. Guyer, and A. Charkravarti (1997). Variations on a theme: cataloging human DNA sequence variation, Science 278:1580-1581.
    • (1997) Science , vol.278 , pp. 1580-1581
    • Collins, F.S.1    Guyer, M.S.2    Charkravarti, A.3
  • 19
    • 10244230901 scopus 로고    scopus 로고
    • A gene map of the human genome
    • G. D. Schuler, M. S. Boguski, E. A. Stewart, et al. (1996). A gene map of the human genome, Science 274:540-546.
    • (1996) Science , vol.274 , pp. 540-546
    • Schuler, G.D.1    Boguski, M.S.2    Stewart, E.A.3
  • 22
    • 0035160371 scopus 로고    scopus 로고
    • A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations
    • L. M. Raamsdonk, B. Teusink, D. Broadhurst, et al. (2001). A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations, Nat. Biotechnol. 19:45-50.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 45-50
    • Raamsdonk, L.M.1    Teusink, B.2    Broadhurst, D.3
  • 24
    • 84874654823 scopus 로고    scopus 로고
    • Arrays come to age
    • Annonymous
    • Annonymous (2004). Arrays come to age, Genome Technol. 42:38-39.
    • (2004) Genome Technol. , vol.42 , pp. 38-39
  • 25
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • T. R. Golub, D. K. Slonim, P. Tamayo, et al. (1999). Molecular classification of cancer: class discovery and class prediction by gene expression monitoring, Science 286:531-537.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3
  • 26
    • 0037226738 scopus 로고    scopus 로고
    • Implications of dayto- day variability on measurements of usual food and nutrient intakes
    • U. Palaniappan, R. I. Cue, H. Payette, and K. Gray-Donald (2003). Implications of dayto- day variability on measurements of usual food and nutrient intakes, J. Nutr. 133:232-235.
    • (2003) J. Nutr. , vol.133 , pp. 232-235
    • Palaniappan, U.1    Cue, R.I.2    Payette, H.3    Gray-Donald, K.4
  • 27
    • 4544369826 scopus 로고    scopus 로고
    • Greek Orthodox fasting rituals: A hidden characteristic of the Mediterranean diet of Crete
    • K. O. Sarri, M. K. Linardakis, F. N. Bervanaki, N. E. Tzanakis, and A. G. Kafatos (2004). Greek Orthodox fasting rituals: A hidden characteristic of the Mediterranean diet of Crete, Br. J. Nutr. 92:277-284.
    • (2004) Br. J. Nutr. , vol.92 , pp. 277-284
    • Sarri, K.O.1    Linardakis, M.K.2    Bervanaki, F.N.3    Tzanakis, N.E.4    Kafatos, A.G.5
  • 28
    • 6044242267 scopus 로고    scopus 로고
    • Physiological and chronobiological changes during Ramadan intermittent fasting
    • R. Roky, I. Houti, S. Moussamih, S. Qotbi, and N. Aadil (2004). Physiological and chronobiological changes during Ramadan intermittent fasting, Ann. Nutr. Metab. 48:296-303.
    • (2004) Ann. Nutr. Metab. , vol.48 , pp. 296-303
    • Roky, R.1    Houti, I.2    Moussamih, S.3    Qotbi, S.4    Aadil, N.5
  • 29
    • 0031157749 scopus 로고    scopus 로고
    • Effect of the Yom Kippur fast on parturition
    • A. Wiser, E. Maymon, M. Mazor, et al. (1997). Effect of the Yom Kippur fast on parturition, Harefuah 132:745-824.
    • (1997) Harefuah , vol.132 , pp. 745-824
    • Wiser, A.1    Maymon, E.2    Mazor, M.3
  • 30
    • 0038476614 scopus 로고    scopus 로고
    • Transcriptional regulation of the lactase-phlorizin hydrolase gene by polymorphisms associated with adult-type hypolactasia
    • M. Kuokkanen, N. S. Enattah, A. Oksanen, et al. (2003). Transcriptional regulation of the lactase-phlorizin hydrolase gene by polymorphisms associated with adult-type hypolactasia, Gut 52:647-652.
    • (2003) Gut , vol.52 , pp. 647-652
    • Kuokkanen, M.1    Enattah, N.S.2    Oksanen, A.3
  • 31
    • 20544471519 scopus 로고    scopus 로고
    • The human obesity gene map: The 2004 update
    • L. Perusse, T. Rankinen, A. Zuberi, et al. (2005). The human obesity gene map: The 2004 update, Obesity Res. 13:381-490.
    • (2005) Obesity Res. , vol.13 , pp. 381-490
    • Perusse, L.1    Rankinen, T.2    Zuberi, A.3
  • 33
    • 3442885665 scopus 로고    scopus 로고
    • Population genetic analysis of ascertained SNP data
    • R. Nielsen (2004). Population genetic analysis of ascertained SNP data, Hum. Genomics 1:218-224.
    • (2004) Hum. Genomics , vol.1 , pp. 218-224
    • Nielsen, R.1
  • 34
    • 21644451292 scopus 로고    scopus 로고
    • Sample size calculation for multiple testing in microarray data analysis
    • S. H. Jung, H. Bang, and S. Young (2005). Sample size calculation for multiple testing in microarray data analysis, Biostatistics 6:157-169.
    • (2005) Biostatistics , vol.6 , pp. 157-169
    • Jung, S.H.1    Bang, H.2    Young, S.3
  • 35
    • 2942582468 scopus 로고    scopus 로고
    • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    • F. Gao, B. C. Foat, and H. J. Bussemaker (2004). Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data, BMC Bioinformatics 5:31.
    • (2004) BMC Bioinformatics , vol.5 , pp. 31
    • Gao, F.1    Foat, B.C.2    Bussemaker, H.J.3
  • 36
    • 0034704229 scopus 로고    scopus 로고
    • A global geometric framework for nonlinear dimensionality reduction
    • J. B. Tenenbaum, V. de Silva, and J. C. Langford (2000). A global geometric framework for nonlinear dimensionality reduction, Science 290:2319-2323.
    • (2000) Science , vol.290 , pp. 2319-2323
    • Tenenbaum, J.B.1    de Silva, V.2    Langford, J.C.3
  • 37
    • 0034704222 scopus 로고    scopus 로고
    • Nonlinear dimensionality reduction by locally linear embedding
    • S. T. Roweis and L. K. Saul (2000). Nonlinear dimensionality reduction by locally linear embedding, Science 290:2323-2326.
    • (2000) Science , vol.290 , pp. 2323-2326
    • Roweis, S.T.1    Saul, L.K.2
  • 40
    • 0042378381 scopus 로고    scopus 로고
    • Laplacian eigenmaps for dimensionality reduction and data representation
    • M. Belkin and P. Niyogi (2003). Laplacian eigenmaps for dimensionality reduction and data representation, Neural Comput. 15:1373-1396.
    • (2003) Neural Comput. , vol.15 , pp. 1373-1396
    • Belkin, M.1    Niyogi, P.2
  • 41
    • 0036821665 scopus 로고    scopus 로고
    • Dimensionality reduction of hyperspectral data using discrete wavelet transform feature extraction
    • L. M. Bruce, C. H. Koger, and J. Li (2002). Dimensionality reduction of hyperspectral data using discrete wavelet transform feature extraction, IEEE Trans. Geosci. Remote Sensing 40:2331-2337.
    • (2002) IEEE Trans. Geosci. Remote Sensing , vol.40 , pp. 2331-2337
    • Bruce, L.M.1    Koger, C.H.2    Li, J.3
  • 43
    • 17444406668 scopus 로고    scopus 로고
    • Identifying critical variables of principal components for unsupervised feature selection
    • K. Z. Mao (2005). Identifying critical variables of principal components for unsupervised feature selection, IEEE Trans. Syst. Man Cybern. Part B Cybern. 35:339-344.
    • (2005) IEEE Trans. Syst. Man Cybern. Part B Cybern. , vol.35 , pp. 339-344
    • Mao, K.Z.1
  • 44
    • 13744261323 scopus 로고    scopus 로고
    • Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data
    • Y. Tan, L. Shi, W. Tong, and C. Wang (2005). Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data, Nucleic Acids Res. 33:56-65.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 56-65
    • Tan, Y.1    Shi, L.2    Tong, W.3    Wang, C.4
  • 45
    • 0344824414 scopus 로고    scopus 로고
    • Robust singular value decomposition analysis of microarray data
    • L. Liu, D. M. Hawkins, S. Ghosh, and S. S. Young (2003). Robust singular value decomposition analysis of microarray data, Proc. Natl. Acad. Sci. U.S.A. 100:13167-13172.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 13167-13172
    • Liu, L.1    Hawkins, D.M.2    Ghosh, S.3    Young, S.S.4
  • 46
    • 15944413421 scopus 로고    scopus 로고
    • Relational patterns of gene expression via non-metric multidimensional scaling analysis
    • Y. H. Taguchi and Y. Oono (2005). Relational patterns of gene expression via non-metric multidimensional scaling analysis, Bioinformatics 21:730-740.
    • (2005) Bioinformatics , vol.21 , pp. 730-740
    • Taguchi, Y.H.1    Oono, Y.2
  • 47
    • 0037014601 scopus 로고    scopus 로고
    • Discriminant analysis to evaluate clustering of gene expression data
    • M. A. Mendez, C. Hodar, C. Vulpe, M. Gonzalez, and V. Cambiazo (2002). Discriminant analysis to evaluate clustering of gene expression data, FEBS Lett. 522:24-28.
    • (2002) FEBS Lett. , vol.522 , pp. 24-28
    • Mendez, M.A.1    Hodar, C.2    Vulpe, C.3    Gonzalez, M.4    Cambiazo, V.5
  • 48
    • 2942511784 scopus 로고    scopus 로고
    • Clustering of the SOM easily reveals distinct gene expression patterns: Results of a reanalysis of lymphoma study
    • J. Wang, J. Delabie, H. Aasheim, E. Smeland, and O. Myklebost (2002). Clustering of the SOM easily reveals distinct gene expression patterns: Results of a reanalysis of lymphoma study, BMC Bioinformatics 3:36.
    • (2002) BMC Bioinformatics , vol.3 , pp. 36
    • Wang, J.1    Delabie, J.2    Aasheim, H.3    Smeland, E.4    Myklebost, O.5
  • 49
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • E. Hubbell, W. M. Liu, and R. Mei (2002). Robust estimators for expression analysis, Bioinformatics 18:1585-1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 50
    • 17744413236 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
    • RESEARCH0032
    • C. Li and W. Hung Wong (2001). Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application, Genome Biol. 2: RESEARCH0032.
    • (2001) Genome Biol , vol.2
    • Li, C.1    Hung Wong, C.2
  • 51
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
    • C. Li and W. H. Wong (2001). Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection, Proc. Natl. Acad. Sci. U.S.A. 98:31-36.
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 53
    • 12244313858 scopus 로고    scopus 로고
    • Analysis of high density expression microarrays with signed-rank call algorithms
    • W. M. Liu, R. Mei, X. Di, et al. (2002). Analysis of high density expression microarrays with signed-rank call algorithms, Bioinformatics 18:1593-1599.
    • (2002) Bioinformatics , vol.18 , pp. 1593-1599
    • Liu, W.M.1    Mei, R.2    Di, X.3
  • 54
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • B. M. Bolstad, R. A. Irizarry, M. Astrand, and T. P. Speed (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias, Bioinformatics 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 55
    • 4644342037 scopus 로고    scopus 로고
    • Effect of normalization on significance testing for oligonucleotide microarrays
    • R. S. Parrish and H. J. Spencer, (2004). Effect of normalization on significance testing for oligonucleotide microarrays, J. Biopharm. Stat. 14:575-589.
    • (2004) J. Biopharm. Stat. , vol.14 , pp. 575-589
    • Parrish, R.S.1    Spencer, H.J.2
  • 56
    • 0842309817 scopus 로고    scopus 로고
    • Comparison of different probe-level analysis techniques for oligonucleotide microarrays
    • B. Rosati, F. Grau, A. Kuehler, S. Rodriguez, and D. McKinnon (2004). Comparison of different probe-level analysis techniques for oligonucleotide microarrays, Biotechniques 36:316-322.
    • (2004) Biotechniques , vol.36 , pp. 316-322
    • Rosati, B.1    Grau, F.2    Kuehler, A.3    Rodriguez, S.4    McKinnon, D.5
  • 57
    • 2942534609 scopus 로고    scopus 로고
    • Getting the right cells to the array: gene expression microarray analysis of cell mixtures and sorted cells
    • P. Szaniszlo, N. Wang, M. Sinha, et al. (2004). Getting the right cells to the array: gene expression microarray analysis of cell mixtures and sorted cells, Cytometry Part A 59:191-202.
    • (2004) Cytometry Part A , vol.59 , pp. 191-202
    • Szaniszlo, P.1    Wang, N.2    Sinha, M.3
  • 58
    • 17244377241 scopus 로고    scopus 로고
    • Purity for clarity: the need for purification of tumor cells in DNA microarray studies
    • D. de Ridder, C. E. van der Linden, T. Schonewille, et al. (2005). Purity for clarity: the need for purification of tumor cells in DNA microarray studies, Leukemia 19:618-627.
    • (2005) Leukemia , vol.19 , pp. 618-627
    • de Ridder, D.1    van der Linden, C.E.2    Schonewille, T.3
  • 59
    • 25444512607 scopus 로고    scopus 로고
    • Sample phenotype clusters in highdensity oligonucleotide microarray data sets are revealed using isomap A nonlinear algorithm
    • K. Dawson, R. L. Rodriguez, and W. Malyj (2005). Sample phenotype clusters in highdensity oligonucleotide microarray data sets are revealed using isomap, a nonlinear algorithm, BMC Bioinformatics 6:195.
    • (2005) BMC Bioinformatics , vol.6 , pp. 195
    • Dawson, K.1    Rodriguez, R.L.2    Malyj, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.