-
2
-
-
0038699591
-
High-throughput classification of yeast mutants for functional genomics using metabolic footprinting
-
Allen, J., Davey, H.M., Broadhurst, D., Heald, J.K., Rowland, J.J., Oliver, S.G., and Kell, D.B. 2003. High-throughput classification of yeast mutants for functional genomics using metabolic footprinting. Nat. Biotechnol. 21: 692-696.
-
(2003)
Nat. Biotechnol
, vol.21
, pp. 692-696
-
-
Allen, J.1
Davey, H.M.2
Broadhurst, D.3
Heald, J.K.4
Rowland, J.J.5
Oliver, S.G.6
Kell, D.B.7
-
3
-
-
8144230574
-
Discrimination of modes of action of antifungal substances by use of metabolic footprinting
-
Allen, J., Davey, H., Broadhurst, D., Rowland, J., Oliver, S., and Kell, D.B. 2004. Discrimination of modes of action of antifungal substances by use of metabolic footprinting. Appl. Environ. Microbiol. 70: 6157-6165.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 6157-6165
-
-
Allen, J.1
Davey, H.2
Broadhurst, D.3
Rowland, J.4
Oliver, S.5
Kell, D.B.6
-
4
-
-
0031416546
-
Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae
-
Baganz, F., Hayes, A., Marren, D., Gardner, D.C.J., and Oliver, S.G. 1997. Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae. Yeast 13: 1563-1573.
-
(1997)
Yeast
, vol.13
, pp. 1563-1573
-
-
Baganz, F.1
Hayes, A.2
Marren, D.3
Gardner, D.C.J.4
Oliver, S.G.5
-
5
-
-
0027976872
-
A family of hexosephosphate mutases in Saccharomyces cerevisiae
-
Boles, E., Liebetrau, W., Hofmann, M., and Zimmerman, F.K. 1994. A family of hexosephosphate mutases in Saccharomyces cerevisiae. Eur. J. Biochem. 220: 83-96.
-
(1994)
Eur. J. Biochem
, vol.220
, pp. 83-96
-
-
Boles, E.1
Liebetrau, W.2
Hofmann, M.3
Zimmerman, F.K.4
-
6
-
-
20444363124
-
From genomes to in silico cells via metabolic networks
-
Borodina, I. and Nielsen, J. 2005. From genomes to in silico cells via metabolic networks. Curr. Opin. Biotechnol. 16: 350-355.
-
(2005)
Curr. Opin. Biotechnol
, vol.16
, pp. 350-355
-
-
Borodina, I.1
Nielsen, J.2
-
7
-
-
0018637069
-
Genetics and physiology of proline utilization in Saccharomyces cerevisiae: Mutation causing constitutive enzyme expression
-
Brandriss, M.C. and Magasanik, B. 1979. Genetics and physiology of proline utilization in Saccharomyces cerevisiae: Mutation causing constitutive enzyme expression. J. Bacteriol. 140: 504-507.
-
(1979)
J. Bacteriol
, vol.140
, pp. 504-507
-
-
Brandriss, M.C.1
Magasanik, B.2
-
8
-
-
33747882099
-
Magnetic resonance spectroscopy and imaging-Powerful tools for functional genomics
-
eds. B.N. Kholodenko and H.V. Westerhoff, pp, Horizon Bioscience, UK
-
Brindle, K.M. 2004. Magnetic resonance spectroscopy and imaging-Powerful tools for functional genomics. In Metabolic engineering in the post genomic era. (eds. B.N. Kholodenko and H.V. Westerhoff), pp. 69-87. Horizon Bioscience, UK.
-
(2004)
Metabolic engineering in the post genomic era
, pp. 69-87
-
-
Brindle, K.M.1
-
9
-
-
1242274402
-
Flux coupling analysis of genome-scale metabolic network reconstructions
-
Burgard, A.P., Nikolaev, E.V., Schilling, C.H., and Maranas, C.D. 2004. Flux coupling analysis of genome-scale metabolic network reconstructions. Genome Res. 14: 301-312.
-
(2004)
Genome Res
, vol.14
, pp. 301-312
-
-
Burgard, A.P.1
Nikolaev, E.V.2
Schilling, C.H.3
Maranas, C.D.4
-
10
-
-
0037371728
-
An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry
-
Castrillo, J., Hayes, A., Mohammed, S., Gaskell, S.J., and Oliver, S. 2003. An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry. Phytochemistry 62: 929-937.
-
(2003)
Phytochemistry
, vol.62
, pp. 929-937
-
-
Castrillo, J.1
Hayes, A.2
Mohammed, S.3
Gaskell, S.J.4
Oliver, S.5
-
11
-
-
0026715777
-
A method for the determination of changes of glycolytic metabolites in yeast on a subsecond time scale using extraction at neutral pH
-
de Koning, W. and Van Dam, K. 1992. A method for the determination of changes of glycolytic metabolites in yeast on a subsecond time scale using extraction at neutral pH. Anal. Biochem. 204: 118-123.
-
(1992)
Anal. Biochem
, vol.204
, pp. 118-123
-
-
de Koning, W.1
Van Dam, K.2
-
12
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
Duarte, N.C., Herrgard, M.J., and Palsson, B.O. 2004. Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res. 14: 1298-1309.
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.O.3
-
13
-
-
0001315646
-
Quantitative structure-activity relationship model validation
-
eds. F. Chen and G. Schuurmann, pp, SETAC Press, Pensacola, FL
-
Eriksson, L., Johansson, E., and Wold, S. 1997. Quantitative structure-activity relationship model validation. In Quantitative structure-activity relationships in environmental sciences. (eds. F. Chen and G. Schuurmann), pp. 381-397. SETAC Press, Pensacola, FL.
-
(1997)
Quantitative structure-activity relationships in environmental sciences
, pp. 381-397
-
-
Eriksson, L.1
Johansson, E.2
Wold, S.3
-
14
-
-
0344824417
-
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
-
Famili, I., Forster, J., Nielson, J., and Palsson, B.O. 2003. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc. Natl. Acad. Sci. 100: 13134-13139.
-
(2003)
Proc. Natl. Acad. Sci
, vol.100
, pp. 13134-13139
-
-
Famili, I.1
Forster, J.2
Nielson, J.3
Palsson, B.O.4
-
15
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Forster, J., Famili, I., Fu, P., Palsson, B.O., and Nielsen, J. 2003. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13: 244-253.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Forster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
16
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever, G., Chu, A., Ni, L., Connelly, C., Riles, L., Veronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., Andre, B., et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418: 387-391.
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
-
17
-
-
0030806641
-
A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol
-
Gonzalez, B., Francois, J., and Renaud, M. 1997. A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol. Yeast 13: 1347-1355.
-
(1997)
Yeast
, vol.13
, pp. 1347-1355
-
-
Gonzalez, B.1
Francois, J.2
Renaud, M.3
-
18
-
-
0022911240
-
Construction and physiological characterization of mutants disrupted in the phosphofructokinase genes of Saccharomyces cerevisiae
-
Heinisch, J. 1986. Construction and physiological characterization of mutants disrupted in the phosphofructokinase genes of Saccharomyces cerevisiae. Curr. Genet. 11: 227-234.
-
(1986)
Curr. Genet
, vol.11
, pp. 227-234
-
-
Heinisch, J.1
-
19
-
-
0030884866
-
Glucose-6-P control of glycogen synthase phosphorylation
-
Huang, D., Wilson, W., and Roach, P. 1997. Glucose-6-P control of glycogen synthase phosphorylation. J. Biol. Chem. 272: 22495-22501.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 22495-22501
-
-
Huang, D.1
Wilson, W.2
Roach, P.3
-
20
-
-
0043282812
-
Functional genomics via metabolic footprinting: Monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT-IR and direct injection electrospray mass spectrometry
-
Kaderbhai, N., Broadhurst, D., Ellis, D., Goodacre, R., and Kell, D. 2003. Functional genomics via metabolic footprinting: Monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT-IR and direct injection electrospray mass spectrometry. Comp. Funct. Genom. 4: 376-391.
-
(2003)
Comp. Funct. Genom
, vol.4
, pp. 376-391
-
-
Kaderbhai, N.1
Broadhurst, D.2
Ellis, D.3
Goodacre, R.4
Kell, D.5
-
21
-
-
21344466364
-
Metabolic footprinting and systems biology: The medium is the message
-
Kell, D., Brown, M., Davey, H., Dunn, W., Spasic, I., and Oliver, S. 2005. Metabolic footprinting and systems biology: The medium is the message. Nat. Rev. Microbiol. 3: 557-565.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 557-565
-
-
Kell, D.1
Brown, M.2
Davey, H.3
Dunn, W.4
Spasic, I.5
Oliver, S.6
-
22
-
-
25844463806
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
-
Kuepfer, L., Sauer, U., and Blank, L.M. 2005. Metabolic functions of duplicate genes in Saccharomyces cerevisiae. Genome Res. 15: 1421-1430.
-
(2005)
Genome Res
, vol.15
, pp. 1421-1430
-
-
Kuepfer, L.1
Sauer, U.2
Blank, L.M.3
-
23
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., et al. 2002. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298: 799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
24
-
-
0032168794
-
Systematic functional analysis of the yeast genome
-
Oliver, S.G., Winson, M.K., Kell, D.B., and Baganz, F. 1998. Systematic functional analysis of the yeast genome. Trends Biotechnol. 16: 373-378.
-
(1998)
Trends Biotechnol
, vol.16
, pp. 373-378
-
-
Oliver, S.G.1
Winson, M.K.2
Kell, D.B.3
Baganz, F.4
-
25
-
-
0028220510
-
Use of synthetic lethal mutants to clone and characterize a novel CTP synthetase gene in Saccharomyces cerevisiae
-
Ozier-Kalogeropoulos, O., Adeline, M.T., Yang, W.L., Carman, G.M., and Lacroute, F. 1994. Use of synthetic lethal mutants to clone and characterize a novel CTP synthetase gene in Saccharomyces cerevisiae. Mol. Gen. Genet. 242: 431-439.
-
(1994)
Mol. Gen. Genet
, vol.242
, pp. 431-439
-
-
Ozier-Kalogeropoulos, O.1
Adeline, M.T.2
Yang, W.L.3
Carman, G.M.4
Lacroute, F.5
-
26
-
-
28444475529
-
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
-
Pal, C., Papp, B., and Lercher, M.J. 2005. Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nat. Genet. 37: 1372-1375.
-
(2005)
Nat. Genet
, vol.37
, pp. 1372-1375
-
-
Pal, C.1
Papp, B.2
Lercher, M.J.3
-
27
-
-
8544223537
-
Hierarchical thinking in network biology: The unbiased modularization of biochemical networks
-
Papin, J.A., Reed, J.L., and Palsson, B.O. 2004. Hierarchical thinking in network biology: The unbiased modularization of biochemical networks. Trends Biochem. Sci. 29: 641-647.
-
(2004)
Trends Biochem. Sci
, vol.29
, pp. 641-647
-
-
Papin, J.A.1
Reed, J.L.2
Palsson, B.O.3
-
28
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
Patil, K.R. and Nielsen, J. 2005. Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc. Natl. Acad. Sci. 102: 2685-2689.
-
(2005)
Proc. Natl. Acad. Sci
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
29
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
Price, N.D., Reed, J.L., and Palsson, B.O. 2004. Genome-scale models of microbial cells: Evaluating the consequences of constraints. Nat. Rev. Microbiol. 2: 886-897.
-
(2004)
Nat. Rev. Microbiol
, vol.2
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
30
-
-
3342906838
-
Discrimination models using variance-stabilizing transformation of metabolomic NMR data
-
Purohit, P.V., Rocke, D.M., Viant, M.R., and Woodruff, D.L. 2004. Discrimination models using variance-stabilizing transformation of metabolomic NMR data. OMICS 8: 118-130.
-
(2004)
OMICS
, vol.8
, pp. 118-130
-
-
Purohit, P.V.1
Rocke, D.M.2
Viant, M.R.3
Woodruff, D.L.4
-
31
-
-
0035160371
-
Functional genomics via the metabolome: A FANCY approach to characterising mutations with a silent phenotype
-
Raamsdonk, L.M., Teusink, B., Broadhurst, D., Zhang, N., Hayes, A., Walsh, M.C., Berden, J.A., Brindle, K.M., Kell, D.B., Rowland, J.J., et al. 2001. Functional genomics via the metabolome: A FANCY approach to characterising mutations with a silent phenotype. Nat. Biotechnol. 19: 45-50.
-
(2001)
Nat. Biotechnol
, vol.19
, pp. 45-50
-
-
Raamsdonk, L.M.1
Teusink, B.2
Broadhurst, D.3
Zhang, N.4
Hayes, A.5
Walsh, M.C.6
Berden, J.A.7
Brindle, K.M.8
Kell, D.B.9
Rowland, J.J.10
-
32
-
-
0028058793
-
A new approach for isolating cell-wall mutants in Saccharomyces cerevisiae by screening for hypersensitivity to calcofluor white
-
Ram, A.F.J., Wolters, A., Tenhoopen, R., and Klis, F.M. 1994. A new approach for isolating cell-wall mutants in Saccharomyces cerevisiae by screening for hypersensitivity to calcofluor white. Yeast 10: 1019-1030.
-
(1994)
Yeast
, vol.10
, pp. 1019-1030
-
-
Ram, A.F.J.1
Wolters, A.2
Tenhoopen, R.3
Klis, F.M.4
-
33
-
-
0141865494
-
Modulation of transcription factor function by an amino acid: Activation of Put3p by proline
-
Sellick, C.A. and Reece, R.J. 2003. Modulation of transcription factor function by an amino acid: Activation of Put3p by proline. EMBO J. 22: 5147-5153.
-
(2003)
EMBO J
, vol.22
, pp. 5147-5153
-
-
Sellick, C.A.1
Reece, R.J.2
-
34
-
-
0032077442
-
The danger of metabolic pathways with turbo design
-
Teusink, B., Walsh, M.C., van Dam, K., and Westerhoff, H.V. 1998. The danger of metabolic pathways with turbo design. Trends Biochem. Sci. 23: 162-169.
-
(1998)
Trends Biochem. Sci
, vol.23
, pp. 162-169
-
-
Teusink, B.1
Walsh, M.C.2
van Dam, K.3
Westerhoff, H.V.4
-
35
-
-
20544445469
-
High-throughput metabolic state analysis: The missing link in integrated functional genomics of yeasts
-
Villas-Bôas, S.G., Moxley, J.F., Åkesson, M., Stephanopoulos, G., and Nielsen, J. 2005. High-throughput metabolic state analysis: The missing link in integrated functional genomics of yeasts. Biochem. J. 388: 669-677.
-
(2005)
Biochem. J
, vol.388
, pp. 669-677
-
-
Villas-Bôas, S.G.1
Moxley, J.F.2
Åkesson, M.3
Stephanopoulos, G.4
Nielsen, J.5
-
36
-
-
2442647715
-
Differential metabolic networks unravel the effects of silent plant phenotypes
-
Weckwerth, W., Loureiro, M.E., Wenzel, K., and Fiehn, O. 2004. Differential metabolic networks unravel the effects of silent plant phenotypes. Proc. Natl. Acad. Sci. 101: 7809-7814.
-
(2004)
Proc. Natl. Acad. Sci
, vol.101
, pp. 7809-7814
-
-
Weckwerth, W.1
Loureiro, M.E.2
Wenzel, K.3
Fiehn, O.4
-
37
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., et al. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
|