Differential gene expression in the brain of channel catfish (Ictalurus punctatus) in response to cold acclimation

Molecular Genetics and Genomics

Volumn 268, Issue 1, 2002, Pages 87-95

  Ju, Z ^a   Dunham, R ^a   Liu, Z ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Catfish; Cold acclimation; Differential expression; Expressed sequence tags (ESTs); Microarray

Indexed keywords

ACYL COENZYME A; AUTOANTIGEN; CALMODULIN INHIBITOR; CHAPERONE; COMPLEMENTARY DNA; GENE PRODUCT; HEAT SHOCK PROTEIN 70; HEAT SHOCK PROTEIN 90; INORGANIC PYROPHOSPHATASE; INTERFERON REGULATORY FACTOR 3; PROTEIN; PROTEIN TB2; RIBOSOME PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

ADAPTATION; ANIMAL TISSUE; ARTICLE; BRAIN; CHANNEL CATFISH; COLD ACCLIMATIZATION; COLD TOLERANCE; CONTROLLED STUDY; DNA MICROARRAY; DOWN REGULATION; ENVIRONMENTAL TEMPERATURE; INCUBATION TIME; LIPID METABOLISM; LOW TEMPERATURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INDUCTION; PROTEIN MODIFICATION; PROTEIN SYNTHESIS; SIGNAL TRANSDUCTION; TEMPERATURE DEPENDENCE;

ACCLIMATIZATION; ANIMALS; BRAIN; COLD; DOWN-REGULATION; ENVIRONMENTAL EXPOSURE; FISH PROTEINS; GENE EXPRESSION REGULATION; ICTALURIDAE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RNA, MESSENGER; TIME FACTORS; UP-REGULATION;

ANIMALIA; CATFISH; ICTALURUS; ICTALURUS PUNCTATUS;

EID: 0036384940     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-002-0727-9     Document Type: Article

References (38)

1. Beattie JH, Black DJ, Wood AM, Trayhurn P (1996) Cold-induced expression of the metallothionein-1 gene in brown adipose tissue of rats. Am J Physiol 270:R971-R977
2. Bly JE, Clem LW (1991) Temperature-mediated processes in teleost immunity: in vitro immunosuppression induced by in vivo low temperature in channel catfish. Vet Immunol Immunopathol 28:365-377
3. Bly JE, Buttke TM, Meydrech EF, Clem LW (1986) The effects of in vivo acclimation temperature on the fatty acid composition of channel catfish (Ictalurus punctatus) peripheral blood cells. Comp Biochem Physiol B 83:791-795
4. Browse J, Xin Z (2001) Temperature sensing and cold acclimation. Curr Opin Plant Biol 4:241-246
5. Bryant ZL, Subrahmanyan M, Tworoger L, LaTray CR, Liu M, Li J, van den Engh G, Ruohola-Baker H (1999) Characterization of differentially expressed genes in purified Drosophila follicle cells: toward a general strategy for cell type-specific developmental analysis. Proc Natl Acad Sci USA 96:5559-5564
6. Calero M, Whittaker GR, Collins RN (2001) Yop1p, the yeast homolog of the polyposis locus protein 1, interacts with Yip1p and negatively regulates cell growth. J Biol Chem 276:12100-12112
7. Chang BH, Mukherji S, Soderling TR (1998) Characterization of a calmodulin kinase II inhibitior protein in brain. Proc Natl Acad Sci USA 95:10890-10895
8. Cheng GJ, Morrow-Tesch JL, Beller DI, Levy EM, Black PH (1990) Immunosuppression in mice induced by cold water stress. Brain Behav Immun 4:278-291
9. Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159
10. Dunn JF (1987) Low-temperature adaptation of oxidative energy production in cold-water fishes. Can J Zool 66:1098-1104
11. Gaigg B, Neergaard IB, Schneiter R, Hansen JK, Faergeman NJ, Jensen NA, Andersen JR, Friis J, Sandhoff R, Schroder HD, Knudsen J (2001) Depletion of acyl-coenzyme A-binding protein affects sphingolipid synthesis and causes vesicle accumulation and membrane defects in Saccharomyces cerevisiae. Mol Biol Cell 12:1147-1160
12. Hakak Y, Walker JR, Li C, Wong WH, Davis KL, Buxbaum JD, Haroutunian V, Fienberg AA (2001) Genome-wide expression analysis reveals dysregulation of myelination-related genes in chronic schizophrenia. Proc Natl Acad Sci USA 98:4746-4751
13. Hardewig I, Van Dijk PLM, Moyes CD, Portner HO (1999) Temperature-dependent expression of cytochrome-c oxidase in Antarctic and temperate fish. Am J Physiol 277:R508-R516
14. Ichikawa JK, Norris A, Bangera MG, Geiss GK, van't Wout AB, Bumgarner BE, Lory S (2000) Interaction of Pseudomonas aeruginosa with epithelial cells: identification of differentially regulated genes by expression microarray analysis of human cDNAs. Proc Natl Acad Sci USA 97:9659-9664
15. Ju Z, Karsi A, Kocabas A, Patterson A, Li P, Cao D, Dunham RA, Liu Z (2000) Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profiles from the brain. Gene 261:373-382
16. Kanoh H, Kai M, Wada I (1999) Molecular characterization of the type 2 phosphatidic acid phosphatase. Chem Phys Lipids 98:119-126
17. Kikuchi K, Yamashita M, Watabe S, Aida K (1995) The warm temperature acclimation-related 65-kDa protein, Wap65, in goldfish and its gene expression. J Biol Chem 270:17087-17092
18. Kinzler KW, et al (1991) Identification of FAP locus genes from chromosome 5q21. Science 253:661-665
19. Kloepper-Sams PJ, Stegeman JJ (1992) Effects of temperature acclimation on the expression of hepatic cytochrome P4501A mRNA and protein in the fish Fundulus heteroclitus. Arch Biochem Biophys 299:38-46
20. Liang P, Averboukh L, Keyomarsi K, Sager R, Pardee AB (1992) Differential display and cloning of messenger RNAs from human breast cancer versus mammary epithelial cells. Cancer Res 52:6966-6968
21. Lin R, Heylbroeck C, Genin P, Pitha PM, Hiscott J (1999) Essential role of interferon regulatory factor 3 in direct activation of RANTES chemokine transcription. Mol Cell Biol 19:959-966
22. Lin R, Genin P, Mamane Y, Hiscott J (2000) Selective DNA binding and association with the CREB binding protein coactivator contribute to differential activation of alpha/beta interferon genes by interferon regulatory factors 3 and 7. Mol Cell Biol 20:6342-6353
23. Longshaw VM, Dirr HW, Blatch GL, Lassle M (2000) The in vitro phosphorylation of the co-chaperone mSTI1 by cell cycle kinases substantiates a predicted casein kinase II p34cdc2-NLS (CcN) motif. Biol Chem 381:1133-1138
24. Luft JC, Wilson MR, Bly JE, Miller NW, Clem LW (1996) Identification and characterization of a heat shock protein 70 family member in channel catfish (Ictalurus punctatus). Comp Biochem Physiol B Biochem Mol Biol 113:169-174
25. Moreno CS, Park S, Nelson S, Ashby D, Hubalek F, Lane WS, Pallas DC (2000) WD40 repeat proteins striatin and S/G(2) nuclear autoantigen are members of a novel family of calmodulin-binding proteins that associate with protein phosphatase 2A. J Biol Chem 275:5257-5263
26. 2+/calmodulin-dependent protein kinase II by inter- and intrasubunit-catalyzed autophosphorylations. J Biol Chem 269:13744-13747
27. Pickett MH, Hew CL, Davis PL (1983) Seasonal variation in the level of antifreeze protein mRNA from the winter flounder. Biochim Biophys Acta 739:97-104
28. Reymond P, Weber H, Damond M, Farmer EE (2000) Differential gene expression in response to mechanical wounding and insect feeding in Arabidopsis. Plant Cell 12:707-720
29. Rodnick KJ, Sidell BD (1994) Cold acclimation increases carnitine palmitoyltransferase I activity in oxidative muscle of striped bass. Am J Physiol 266:R405-R412
30. Roussel D, Chainier F, Rouanet J, Barre H (2000) Increase in the adenine nucleotide translocase content of duckling subsarcolemmal mitochondria during cold acclimation. FEBS Lett 477:141-144
31. Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470
32. Shalon D, Smith SJ, Brown PO (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6:639-645
33. Thomashow MF (1999) Plant cold tolerance: freezing tolerance genes and regulatory mechanisms. Annu Rev Plant Physiol Plant Mol Biol 50:571-599
34. Welford SM, Gregg J, Chen E, Garrison D, Sorensen PH, Denny CT, Nelson SF (1998) Detection of differentially expressed genes in primary tumor tissues using representational differences analysis coupled to microarray hybridization. Nucleic Acids Res 26:3059-3065
35. Yang Y, Pritchard PH, Bhuiyan J, Seccombe DW, Moghadasian MH (2001) Overexpression of acyl-coA binding protein and its effects on the flux of free fatty acids in McA-RH 7777 cells. Lipids 36:595-600
36. Yang Z, Wensel TG (1992) Molecular cloning and functional expression of cDNA encoding a mammalian inorganic pyrophosphatase. J Biol Chem 267:24641-24647
37. Yue H, Eastman PS, Wang BB, Minor J, Doctolero MH, Nuttall RL, Stack R, Becker JW, Montgomery JR, Vainer M, Johnston R (2001) An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression. Nucleic Acids Res 29:E41-1
38. Zirlinger M, Kreiman G, Anderson DJ (2001) Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid subnuclei. Proc Natl Acad Sci USA 98:5270-5275