메뉴 건너뛰기




Volumn 392, Issue 1-2, 2007, Pages 291-298

Identification and transcription of transfer RNA genes in dinoflagellate plastid minicircles

Author keywords

Alga; Chloroplast genome; Dinoflagellate; Heterocapsa triquetra; tRNA

Indexed keywords

MESSENGER RNA; TRANSFER RNA;

EID: 33947582592     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.01.018     Document Type: Article
Times cited : (27)

References (33)
  • 1
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome
    • Bachvaroff T.R., Concepcion G.T., Rogers C.R., Herman E.M., and Delwiche C.F. Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 155 (2004) 65-78
    • (2004) Protist , vol.155 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.F.5
  • 2
    • 0033834347 scopus 로고    scopus 로고
    • Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum
    • Barbrook A.C., and Howe C.J. Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum. Mol. Gen. Genet. 263 (2000) 152-158
    • (2000) Mol. Gen. Genet. , vol.263 , pp. 152-158
    • Barbrook, A.C.1    Howe, C.J.2
  • 3
    • 0035210751 scopus 로고    scopus 로고
    • Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum
    • Barbrook A.C., Symington H., Nisbet R.E.R., Larkum A., and Howe C.J. Organisation and expression of the plastid genome of the dinoflagellate Amphidinium operculatum. Mol. Gen. Genet. 266 (2001) 632-638
    • (2001) Mol. Gen. Genet. , vol.266 , pp. 632-638
    • Barbrook, A.C.1    Symington, H.2    Nisbet, R.E.R.3    Larkum, A.4    Howe, C.J.5
  • 4
    • 32544451561 scopus 로고    scopus 로고
    • Why are plastid genomes retained in non-photosynthetic organisms?
    • Barbrook A.C., Howe C.J., and Purton S. Why are plastid genomes retained in non-photosynthetic organisms?. Trends Plant Sci. 11 (2006) 101-108
    • (2006) Trends Plant Sci. , vol.11 , pp. 101-108
    • Barbrook, A.C.1    Howe, C.J.2    Purton, S.3
  • 5
    • 33845320124 scopus 로고    scopus 로고
    • Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes
    • Barbrook A.C., Santucci N., Plenderleith L.J., Hiller R.G., and Howe C.J. Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes. BMC Genomics 7 (2006) 297
    • (2006) BMC Genomics , vol.7 , pp. 297
    • Barbrook, A.C.1    Santucci, N.2    Plenderleith, L.J.3    Hiller, R.G.4    Howe, C.J.5
  • 6
    • 3142719794 scopus 로고    scopus 로고
    • Circular chloroplast chromosomes: the grand illusion
    • Bendich A.J. Circular chloroplast chromosomes: the grand illusion. Plant Cell 16 (2004) 1661-1666
    • (2004) Plant Cell , vol.16 , pp. 1661-1666
    • Bendich, A.J.1
  • 7
    • 13244296941 scopus 로고    scopus 로고
    • In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a chytridiomycete fungus
    • Bullerwell C.E., and Gray M.W. In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a chytridiomycete fungus. J. Biol. Chem. 280 (2005) 2463-2470
    • (2005) J. Biol. Chem. , vol.280 , pp. 2463-2470
    • Bullerwell, C.E.1    Gray, M.W.2
  • 8
    • 0031850991 scopus 로고    scopus 로고
    • Evidence for a single origin of the 35 kb plastid DNA in apicomplexans
    • Denny P., Preiser P., Williamson E., and Wilson I. Evidence for a single origin of the 35 kb plastid DNA in apicomplexans. Protist 149 (1998) 51-59
    • (1998) Protist , vol.149 , pp. 51-59
    • Denny, P.1    Preiser, P.2    Williamson, E.3    Wilson, I.4
  • 9
    • 0001968230 scopus 로고
    • Primary, secondary and tertiary structures of tRNAs
    • Söll D., and RajBhandary U.L. (Eds), American Society for Microbiology, Washington, DC, U.S.A. Chapter 8
    • Dirheimer G., Keith G., Dumas P., and Westhof E. Primary, secondary and tertiary structures of tRNAs. In: Söll D., and RajBhandary U.L. (Eds). tRNA: Structure, Biosynthesis and Function (1995), American Society for Microbiology, Washington, DC, U.S.A. Chapter 8
    • (1995) tRNA: Structure, Biosynthesis and Function
    • Dirheimer, G.1    Keith, G.2    Dumas, P.3    Westhof, E.4
  • 10
    • 1942540766 scopus 로고    scopus 로고
    • The chloroplast genome of dinoflagellates - a reduced instruction set?
    • Green B.R. The chloroplast genome of dinoflagellates - a reduced instruction set?. Protist 155 (2004) 23-31
    • (2004) Protist , vol.155 , pp. 23-31
    • Green, B.R.1
  • 11
    • 73049174685 scopus 로고
    • Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea Cleve
    • Guillard R.R.L., and Ryther J.H. Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea Cleve. Can. J. Microbiol. 8 (1962) 229-239
    • (1962) Can. J. Microbiol. , vol.8 , pp. 229-239
    • Guillard, R.R.L.1    Ryther, J.H.2
  • 12
    • 1242265736 scopus 로고    scopus 로고
    • Migration of the plastid genome to the nucleus in a peridinin dinoflagellate
    • Hackett J.D., et al. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Curr. Biol. 14 (2004) 213-218
    • (2004) Curr. Biol. , vol.14 , pp. 213-218
    • Hackett, J.D.1
  • 13
    • 0035929245 scopus 로고    scopus 로고
    • Empty minicircles and petB/atpA and psbD/psbE (cytb559 α) genes in tandem in Amphidinium carterae plastid DNA
    • Hiller R.G. Empty minicircles and petB/atpA and psbD/psbE (cytb559 α) genes in tandem in Amphidinium carterae plastid DNA. FEBS Lett. 505 (2001) 449-452
    • (2001) FEBS Lett. , vol.505 , pp. 449-452
    • Hiller, R.G.1
  • 14
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida I., and Green B.R. Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 9294-9299
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9294-9299
    • Ishida, I.1    Green, B.R.2
  • 16
    • 1242297827 scopus 로고    scopus 로고
    • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
    • Laslett D., and Canback B. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32 (2004) 11-16
    • (2004) Nucleic Acids Res. , vol.32 , pp. 11-16
    • Laslett, D.1    Canback, B.2
  • 17
    • 0031665151 scopus 로고    scopus 로고
    • A subset of conserved tRNA genes in plastid DNA of nongreen plants
    • Lohan A.J., and Wolfe K.H. A subset of conserved tRNA genes in plastid DNA of nongreen plants. Genetics 150 (1998) 425-433
    • (1998) Genetics , vol.150 , pp. 425-433
    • Lohan, A.J.1    Wolfe, K.H.2
  • 18
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 19
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden G.I. Primary and secondary endosymbiosis and the origin of plastids. J. Phycol. 37 (2001) 951-959
    • (2001) J. Phycol. , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 21
    • 24944505217 scopus 로고    scopus 로고
    • Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles
    • Nelson M.J., and Green B.R. Double hairpin elements and tandem repeats in the non-coding region of Adenoides eludens chloroplast gene minicircles. Gene 358 (2005) 102-110
    • (2005) Gene , vol.358 , pp. 102-110
    • Nelson, M.J.1    Green, B.R.2
  • 22
    • 11144331773 scopus 로고    scopus 로고
    • Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum
    • Nisbet R.E.R., Koumandou V.L., Barbrook A.C., and Howe C.J. Novel plastid gene minicircles in the dinoflagellate Amphidinium operculatum. Gene 331 (2004) 141-147
    • (2004) Gene , vol.331 , pp. 141-147
    • Nisbet, R.E.R.1    Koumandou, V.L.2    Barbrook, A.C.3    Howe, C.J.4
  • 23
    • 1642578795 scopus 로고    scopus 로고
    • Plastid genomes of higher plants and algae: structure and functions
    • Odintsova M.S., and Yurina N.P. Plastid genomes of higher plants and algae: structure and functions. Mol. Biol. 37 (2003) 649-662
    • (2003) Mol. Biol. , vol.37 , pp. 649-662
    • Odintsova, M.S.1    Yurina, N.P.2
  • 24
    • 0002084108 scopus 로고
    • Initiator rRNA initiation of protein synthesis
    • Söll D., and RajBhandary U.L. (Eds), American Society for Microbiology, Washington, DC, USA Chapter 25
    • RajBhandary U.L., and Chow C.M. Initiator rRNA initiation of protein synthesis. In: Söll D., and RajBhandary U.L. (Eds). tRNA: Structure, Biosynthesis and Function (1995), American Society for Microbiology, Washington, DC, USA Chapter 25
    • (1995) tRNA: Structure, Biosynthesis and Function
    • RajBhandary, U.L.1    Chow, C.M.2
  • 25
    • 0035984030 scopus 로고    scopus 로고
    • The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications
    • Simpson C.L., and Stern D.B. The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications. Plant Physiol. 129 (2002) 957-966
    • (2002) Plant Physiol. , vol.129 , pp. 957-966
    • Simpson, C.L.1    Stern, D.B.2
  • 27
    • 0035711657 scopus 로고    scopus 로고
    • The genomics of land plant chloroplasts: gene content and alteration of genomic information by RNA editing
    • Wakasugi T., Tsudzuki T., and Sugiura M. The genomics of land plant chloroplasts: gene content and alteration of genomic information by RNA editing. Photosynth. Res. 70 (2001) 107-118
    • (2001) Photosynth. Res. , vol.70 , pp. 107-118
    • Wakasugi, T.1    Tsudzuki, T.2    Sugiura, M.3
  • 28
    • 32644474412 scopus 로고    scopus 로고
    • Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium
    • Wang Y., and Morse D. Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium. Nucleic Acids Res. 34 (2006) 613-619
    • (2006) Nucleic Acids Res. , vol.34 , pp. 613-619
    • Wang, Y.1    Morse, D.2
  • 29
    • 0030590259 scopus 로고    scopus 로고
    • Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum
    • Wilson R.J.M., et al. Complete gene map of the plastid-like DNA of the malaria parasite Plasmodium falciparum. J. Mol. Biol. 261 (1996) 155-172
    • (1996) J. Mol. Biol. , vol.261 , pp. 155-172
    • Wilson, R.J.M.1
  • 30
    • 8844264552 scopus 로고    scopus 로고
    • Substitutional editing of transcripts from genes of cyanobacterial origin in the dinoflagellate Ceratium horridum
    • Zauner S., Greilinger D., Laatsch T., Kowallik K.V., and Maier U.-G. Substitutional editing of transcripts from genes of cyanobacterial origin in the dinoflagellate Ceratium horridum. FEBS Lett. 577 (2004) 535-538
    • (2004) FEBS Lett. , vol.577 , pp. 535-538
    • Zauner, S.1    Greilinger, D.2    Laatsch, T.3    Kowallik, K.V.4    Maier, U.-G.5
  • 31
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang Z., Green B.R., and Cavalier-Smith T. Single gene circles in dinoflagellate chloroplast genomes. Nature 400 (1999) 155-159
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.1    Green, B.R.2    Cavalier-Smith, T.3
  • 32
    • 0034910778 scopus 로고    scopus 로고
    • A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate
    • Zhang Z., Cavalier-Smith T., and Green B.R. A family of selfish minicircular chromosomes with jumbled chloroplast gene fragments from a dinoflagellate. Mol. Biol. Evol. 18 (2001) 1558-1565
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1558-1565
    • Zhang, Z.1    Cavalier-Smith, T.2    Green, B.R.3
  • 33
    • 0036215266 scopus 로고    scopus 로고
    • Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins
    • Zhang Z., Cavalier-Smith T., and Green B.R. Evolution of dinoflagellate unigenic minicircles and the partially concerted divergence of their putative replicon origins. Mol. Biol. Evol. 19 (2002) 489-500
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 489-500
    • Zhang, Z.1    Cavalier-Smith, T.2    Green, B.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.