-
1
-
-
0037050004
-
-
Alfarano, T.B., Dewar, C.D., Lin, Z., Michalickova, K., Willems, A.R., Sassi, H., Nielsen, P.A., Rasmussen, K.J., Andersen, I.R., Johansen, L.E., Hansen, L.H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B.D., Matthiesen, J., Hendrickson, R.C., Gleeson, E., Pawson, T., Moran, M.E., Durocher, D., Mann, M., Hogue, C.W., Figeys, D. and Tyers, M. (2003) 'Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry', Nature, 415, No. 6868, pp. 180-183.
-
Alfarano, T.B., Dewar, C.D., Lin, Z., Michalickova, K., Willems, A.R., Sassi, H., Nielsen, P.A., Rasmussen, K.J., Andersen, I.R., Johansen, L.E., Hansen, L.H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B.D., Matthiesen, J., Hendrickson, R.C., Gleeson, E., Pawson, T., Moran, M.E., Durocher, D., Mann, M., Hogue, C.W., Figeys, D. and Tyers, M. (2003) 'Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry', Nature, Vol. 415, No. 6868, pp. 180-183.
-
-
-
-
2
-
-
24344452310
-
MULIC: Multi-Layer Increasing Coherence Clustering of Categorical Data Sets
-
Department of Computer Science and Engineering, York University, Technical Report CS-2004-07
-
Andreopoulos, B., An, A. and Wang, X. (2004) MULIC: Multi-Layer Increasing Coherence Clustering of Categorical Data Sets, Department of Computer Science and Engineering, York University, Technical Report CS-2004-07.
-
(2004)
-
-
Andreopoulos, B.1
An, A.2
Wang, X.3
-
3
-
-
13844264514
-
Iterative cluster analysis of protein interaction data
-
Amau, V., Mars, S. and Marin, I. (2005) 'Iterative cluster analysis of protein interaction data', Bioinformatics, Vol. 21, No. 3, pp.364-378.
-
(2005)
Bioinformatics
, vol.21
, Issue.3
, pp. 364-378
-
-
Amau, V.1
Mars, S.2
Marin, I.3
-
4
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi, A.L. and Oltvai, Z.N. (2004) 'Network biology: understanding the cell's functional organization', Nature Reviews Genetics, Vol. 5, pp.101-113.
-
(2004)
Nature Reviews Genetics
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
5
-
-
2942552459
-
An autormated method for finding molecular complexes in large protein interaction networks
-
Bader, G. and Hogue, C. (2003) 'An autormated method for finding molecular complexes in large protein interaction networks', BMC Bioinformatics, Vol. 4, No. 2.
-
(2003)
BMC Bioinformatics
, vol.4
, Issue.2
-
-
Bader, G.1
Hogue, C.2
-
6
-
-
33947547579
-
Cores decomposition of networks
-
September 24-27, Bled, Slovenia
-
Batagelj, V. and Zavernik, M. (2001) 'Cores decomposition of networks', Recent Trends in Graph Theory, Algebraic Combinatorics, and Graph Algorithms, September 24-27, Bled, Slovenia.
-
(2001)
Recent Trends in Graph Theory, Algebraic Combinatorics, and Graph Algorithms
-
-
Batagelj, V.1
Zavernik, M.2
-
7
-
-
0038074373
-
Topological structure analysis of the protein-protein interaction network in budding yeast
-
Bu, D., Zhao, Y., Cai, L., Xue, H., Zhu, X., Lu, H., Zhang, J., Sun, S., Ling, L., Zhang, N., Li, G. and Chen, R. (2003) 'Topological structure analysis of the protein-protein interaction network in budding yeast', Nucleic Acids Research, Vol. 31, No. 9, pp.2443-2450.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.9
, pp. 2443-2450
-
-
Bu, D.1
Zhao, Y.2
Cai, L.3
Xue, H.4
Zhu, X.5
Lu, H.6
Zhang, J.7
Sun, S.8
Ling, L.9
Zhang, N.10
Li, G.11
Chen, R.12
-
8
-
-
0242659154
-
Bioinformatics analysis of experimentally determined protein complexes in the yeast Saccharomyces cerevisiae
-
Dezso, Z., Oltvai, Z.N. and Barabasi, A-L. (2003) 'Bioinformatics analysis of experimentally determined protein complexes in the yeast Saccharomyces cerevisiae', Genome Res., Vol. 13, pp.2450-2454.
-
(2003)
Genome Res
, vol.13
, pp. 2450-2454
-
-
Dezso, Z.1
Oltvai, Z.N.2
Barabasi, A.-L.3
-
9
-
-
33947525646
-
Multi-protein complex data clustering for detecting protein interactions and functional organizations
-
Baltimore, MD, May 26-29
-
Ding, C., He, X., Meraz, R. and Holbrook, S. (2004) 'Multi-protein complex data clustering for detecting protein interactions and functional organizations', Interface 2004: Computational Biology and Bioinformatics, Baltimore, MD, May 26-29.
-
(2004)
Interface 2004: Computational Biology and Bioinformatics
-
-
Ding, C.1
He, X.2
Meraz, R.3
Holbrook, S.4
-
10
-
-
25444490121
-
The use of edge-betweenness clustering to investigate biological function in protein interaction networks
-
March 1
-
Dunn, R., Dudbridge, F. and Sanderson, C.M. (2005) 'The use of edge-betweenness clustering to investigate biological function in protein interaction networks', BMC Bioinformatics, March 1, Vol. 6, No. 1, p.39.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.1
, pp. 39
-
-
Dunn, R.1
Dudbridge, F.2
Sanderson, C.M.3
-
11
-
-
0037050026
-
A functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M. and Bauer, A. (2003) 'A functional organization of the yeast proteome by systematic analysis of protein complexes', Nature, Vol. 415, No. 6868, pp.141-147.
-
(2003)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
-
12
-
-
0345600247
-
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C.A., Finley Jr., R.L., White, K.P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R.A., McKenna, M.P., Chant, J. and Rothberg, J.M. (2003) 'A protein interaction map of Drosophila melanogaster', Science, 302, No. 5651, pp. 1727-1736.
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C.A., Finley Jr., R.L., White, K.P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R.A., McKenna, M.P., Chant, J. and Rothberg, J.M. (2003) 'A protein interaction map of Drosophila melanogaster', Science, Vol. 302, No. 5651, pp. 1727-1736.
-
-
-
-
13
-
-
0000411214
-
Tabu search, part I
-
Glover, E. (1989) 'Tabu search, part I', ORSA Journal on Computing, Vol. 1, No. 3, pp.190-206.
-
(1989)
ORSA Journal on Computing
, vol.1
, Issue.3
, pp. 190-206
-
-
Glover, E.1
-
14
-
-
0034515528
-
A clustering algorithm based on graph connectivity
-
Hartuv, E. and Shamir, R. (2000) 'A clustering algorithm based on graph connectivity', Information Processing Letters, Vol. 76, Nos. 4-6, pp. 175-181.
-
(2000)
Information Processing Letters
, vol.76
, Issue.4-6
, pp. 175-181
-
-
Hartuv, E.1
Shamir, R.2
-
15
-
-
27144536001
-
Extensions to the k-means algorithm for clustering large data sets with categorical values
-
Huang, Z. (1998) 'Extensions to the k-means algorithm for clustering large data sets with categorical values', Data Mining and Knowledge Discovery, Vol. 2, No. 3, pp.283-304.
-
(1998)
Data Mining and Knowledge Discovery
, vol.2
, Issue.3
, pp. 283-304
-
-
Huang, Z.1
-
16
-
-
85142147616
-
Protein complex prediction via cost-based clustering
-
King, A.D., Prulj, N. and Jurisica, I. (2004) 'Protein complex prediction via cost-based clustering', Bioinformatics, Vol. 20, No. 3, pp.340-348.
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 340-348
-
-
King, A.D.1
Prulj, N.2
Jurisica, I.3
-
17
-
-
9144264169
-
-
Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D.J., Chesneau, A., Hao, T., Goldberg, D.S., Li, N., Martinez, M., Rual, J.F., Lamesch, P., Xu, L., Tewari, M., Wong, S.L., Zhang, L., Berriz, G.F., Jacotot, L., Vaglio, P., Reboul, J., Hirozane-Kishikawa, T., Li, Q., Gabel, H.W., Elewa, A., Baumgartner, B., Rose, D.J., Yu, H., Bosak, S., Sequerra, R., Fraser, A., Mango, S.E., Saxton, W.M., Strome, S., van den Heuvel, S., Piano, F., Vandenhaute, J.,Sardet, C., Gerstein, M., Doucette-Stamm, L., Gunsalus, K.C., Harper, J., Cusick, M.E., Roth, F.P., Hill, D.E. and Vidal, M. (2004) 'A map of the interactome network of the metazoan C. elegans', Science, 303, No. 5657. pp.540-543.
-
Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D.J., Chesneau, A., Hao, T., Goldberg, D.S., Li, N., Martinez, M., Rual, J.F., Lamesch, P., Xu, L., Tewari, M., Wong, S.L., Zhang, L., Berriz, G.F., Jacotot, L., Vaglio, P., Reboul, J., Hirozane-Kishikawa, T., Li, Q., Gabel, H.W., Elewa, A., Baumgartner, B., Rose, D.J., Yu, H., Bosak, S., Sequerra, R., Fraser, A., Mango, S.E., Saxton, W.M., Strome, S., van den Heuvel, S., Piano, F., Vandenhaute, J.,Sardet, C., Gerstein, M., Doucette-Stamm, L., Gunsalus, K.C., Harper, J., Cusick, M.E., Roth, F.P., Hill, D.E. and Vidal, M. (2004) 'A map of the interactome network of the metazoan C. elegans', Science, Vol. 303, No. 5657. pp.540-543.
-
-
-
-
18
-
-
4644302726
-
Genomic approach to identification of mutations affecting caspofungin susceptibility in Saccharomyces cerevisiae
-
Markovich, S. (2004) 'Genomic approach to identification of mutations affecting caspofungin susceptibility in Saccharomyces cerevisiae', Antimicrob Agents Chemother, Vol. 48, No. 10, pp.3871-3876.
-
(2004)
Antimicrob Agents Chemother
, vol.48
, Issue.10
, pp. 3871-3876
-
-
Markovich, S.1
-
19
-
-
0036081347
-
Mips: A database for genomes and protein sequences
-
Mewes, H.W., Frishman, D., Guldener, U., Mannhaupt, G., Mayer, K., Mokrejs, M., Morgenstem, B., Munsterkotter, M., Rudd, S. and Weil, B. (2002) 'Mips: a database for genomes and protein sequences', Nucleic Acids Research, Vol. 30, No. 1, pp.31-34.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 31-34
-
-
Mewes, H.W.1
Frishman, D.2
Guldener, U.3
Mannhaupt, G.4
Mayer, K.5
Mokrejs, M.6
Morgenstem, B.7
Munsterkotter, M.8
Rudd, S.9
Weil, B.10
-
20
-
-
37649028224
-
Finding and evaluating community structure in networks
-
Newman, M.E.J, and Girvan, M. (2004) 'Finding and evaluating community structure in networks', Physical Review E, Vol. 69, No. 2, p.026113.
-
(2004)
Physical Review E
, vol.69
, Issue.2
, pp. 026113
-
-
Newman, M.E.J.1
Girvan, M.2
-
21
-
-
0346433839
-
The yeast protein kinase C cell integrity pathway mediates tolerance to the antifungal drug caspofungin through activation of Slt2p mitogen-activated proteinkinase signaling
-
Reinoso-Martin, C., Schuller, C., Schuetzer-Muehlbauer, M. and Kuchler, K. (2003) 'The yeast protein kinase C cell integrity pathway mediates tolerance to the antifungal drug caspofungin through activation of Slt2p mitogen-activated proteinkinase signaling', Eukaryot Cell, Vol. 2, No. 6, pp.1200-1210, http://www.pdg.cnb.uam.es/UniPub/iHOP/gs/31559.html.
-
(2003)
Eukaryot Cell
, vol.2
, Issue.6
, pp. 1200-1210
-
-
Reinoso-Martin, C.1
Schuller, C.2
Schuetzer-Muehlbauer, M.3
Kuchler, K.4
-
22
-
-
0002607026
-
Bayesian classification (AutoClass): Theory and results
-
AAAI Press, Menlo Park, CA, pp
-
Stutz, J. and Cheeseman, P. (1995) 'Bayesian classification (AutoClass): theory and results', Advances in Knowledge Discovery and Data Mining, AAAI Press, Menlo Park, CA, pp. 153-180.
-
(1995)
Advances in Knowledge Discovery and Data Mining
, pp. 153-180
-
-
Stutz, J.1
Cheeseman, P.2
-
23
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in saccharomyces cerevisiae
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T.A., Judson, R.S., Knight, J.R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleish, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S. and Rothberg, J.M. (2000) 'A comprehensive analysis of protein-protein interactions in saccharomyces cerevisiae', Nature, Vol. 403, No. 6770, pp.623-627.
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleish, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
24
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering, C., Krause, R., Snel, B., Cornell, M., Oliver, S.G., Fields, S. and Bork, P. (2002) 'Comparative assessment of large-scale data sets of protein-protein interactions', Nature, Vol. 417, No. 6887, pp.399-403.
-
(2002)
Nature
, vol.417
, Issue.6887
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
25
-
-
0003736078
-
-
2nd ed, Prentice-Hall, Upper Saddle River, NJ
-
West, D.B. (2001) Introduction to Graph Theory, 2nd ed., Prentice-Hall, Upper Saddle River, NJ.
-
(2001)
Introduction to Graph Theory
-
-
West, D.B.1
-
26
-
-
33749064917
-
A parallel algorithm for clustering protein-protein interaction networks
-
Stanford University, CA, August 8-11
-
Yang, Q. and Lonardi, S. (2005) 'A parallel algorithm for clustering protein-protein interaction networks', 2005 IEEE Computational Systems Bioinformatics Conference (CSB2005), Stanford University, CA, August 8-11.
-
(2005)
2005 IEEE Computational Systems Bioinformatics Conference (CSB2005)
-
-
Yang, Q.1
Lonardi, S.2
|