VirGen: A comprehensive viral genome resource

Nucleic Acids Research

Volumn 32, Issue DATABASE ISS., 2004, Pages

  Kulkarni Kale, Urmila ^a   Bhosle, Shriram ^a   Manjari, G Sunitha ^a   Kolaskar, A S ^a  

^a UNIVERSITY OF PUNE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIVIRUS AGENT; B LYMPHOCYTE ANTIGEN; PROTEOME; VIRUS PROTEIN; VIRUS VACCINE;

ARTICLE; BIOINFORMATICS; COMPUTER SYSTEM; DATA ANALYSIS; DRUG DESIGN; GENE SEQUENCE; GENE STRUCTURE; GENETIC DATABASE; GENETIC ORGANIZATION; GENOME ANALYSIS; INFORMATION PROCESSING; INTERNET; MEDICAL RESEARCH; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PREDICTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES COMPARISON; STRUCTURE ANALYSIS; VIRGEN; VIRUS CELL INTERACTION; VIRUS GENOME; VIRUS MORPHOLOGY;

ANTIGENS, VIRAL; ANTIVIRAL AGENTS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; GENOME, VIRAL; GENOMICS; INTERNET; PHYLOGENY; PROTEOME; PROTEOMICS; SEQUENCE ALIGNMENT; TERMINOLOGY; VIRAL PROTEINS; VIRAL VACCINES; VIRUSES;

ANIMALIA;

EID: 0346494856     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. Baxevanis,A.D. (2003) The molecular biology database collection: 2003 update. Nucleic Acids Res., 31, 1-12.
2. Alba,M.M., Lee,D., Pearl,F.M.G., Shepherd,A.J., Martin,N., Orengo,C.A. and Kellam,P. (2001) VIDA: a virus database system for the organization of animal virus genome open reading frames. Nucleic Acids Res., 29, 133-136.
3. Hiscock,D. and Upton,C. (2000) Viral genome database: storing and analyzing genes and proteins from complete viral genomes. Bioinformatics, 16, 484-485.
4. Pelchat,M. (2003) SubViral RNA: a database of smallest known auto-replicable RNA species. Nucleic Acids Res., 31, 444-445.
5. Wheeler,D.L., Church,D.M., Federhen,S., Lash,A.E., Madden,T.L., Pontius,J.U., Schuler, G.D., Schriml,L.M., Sequeira,E., Tatusova,T.A. et al. (2003) Database resources of the National Center for Biotechnology. Nucleic Acids Res., 31, 28-33.
6. Brooksbank,C., Camon, E., Harris,M.A., Magrane,M., Martin,M.J., Mulder,N., O'donovan,C., Parkinson,H., Tuli,M.A., Apweiler,R. et al. (2003) The European Bioinformatics Institute's data resources. Nucleic Acids Res., 31, 43-50.
7. Van Regenmortel,M,H.V., Fauquet,C.M., Bishop,D.H.L., Carstens,E.B., Estes,M.K., Lemon,S.M., Maniloff,J., Mayo,M.A., McGeoch,D.J., Pringle,C.R. et al. (Eds) (2000) Virus Taxonomy: Classification and Nomenclature of Viruses. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, CA.
8. Büchen-Osmond,C. (2003) The Universal Virus Database ICTVdB. Comput. Sci. Eng., 5, 16-25.
9. Altschul,S.F., Madden,T.L., Schäffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
10. Wu,C.H., Yeh,L.-S.L., Huang,H., Arminski,L., Castro-Alvear,J., Chen,Y., Hu,Z., Kourtesis,P., Ledley,R.S., Suzek,B.E. et al. (2003) The Protein Information Resource. Nucleic Acids Res., 31, 345-347.
11. Boeckmann,B., Bairoch,A., Apweiler,R., Blatter,M.-C., Estreicher, A., Gasteiger,E., Martin,M.J., Michoud,K., O'Donovan,C., Phan,I. et al. (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
12. Ashburner,M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight, S.S.. Eppig,J.T. et al. The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nature Genet., 25, 25-29.
13. Kolaskar,A.S. and Kulkarni-Kale,U. (1999) Prediction of three-dimensional structure and mapping of conformational antigenic determinantss of envelope glycoprotein of Japanese encephalitis virus. Virology, 261, 31-42.
14. Kulkarni-Kale,U. and Kolaskar,A.S. (2003) Prediction of 3D structure of envelope glycoprotein of Sri Lanka strain of Japanese encephalitis virus. In Yi-Ping Phoebe Chen (ed.), Conferences in Research and Practice in Information Technology, Australian Computer Society Inc., Sydney, Australia, vol. 19, pp. 87-96.
15. Chenna,R., Sugawara,H., Koike,T., Lopez,R., Gibson,T.J., Higgins,D.G. and Thompson,J.D. (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res., 31, 3497-3500.
16. Felsenstein,J. (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol., 266, 418-427.
17. Kolaskar,A.S. and Tongaonkar,P.C. (1990) A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett., 276, 172-174.