Genetic and phenotypic characterization of the newly described insect flavivirus, Kamiti River virus

Archives of Virology

Volumn 148, Issue 6, 2003, Pages 1095-1118

  Crabtree, Mary B ^a,d   Sang, R C ^b   Stollar, V ^c   Dunster, L M ^b   Miller, B R ^a  

^a NATL CENTER FOR INFECTIOUS DISEASES   (United States)

^b KENYA MEDICAL RESEARCH INSTITUTE   (Kenya)

^c RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

^d NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AEDES; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CERCOPITHECUS AETHIOPS; CRICETINAE; FLAVIVIRIDAE; GENES, VIRAL; INSECT VIRUSES; KENYA; KIDNEY; LARVA; MICE; MOLECULAR SEQUENCE DATA; PHYLOGENY; VERO CELLS; VIRAL PROTEINS;

ARBOVIRUS; CELL FUSING AGENT VIRUS; FLAVIVIRUS; INSECTA; INVERTEBRATA; KAMITI RIVER VIRUS; MOSQUITO-BORNE VIRUSES; VERTEBRATA;

EID: 0038275943     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-003-0019-7     Document Type: Article

References (57)

1. Bause E (1983) Structural requirements of N-glycosylation of proteins. Studies with proline peptides as conformational probes. Biochem J 209: 331-336
2. Bazan JF, Fletterick RJ (1989) Detection of a trypsin-like serine protease domain in flaviviruses and pestiviruses. Virology 171: 637-639
3. Billoir F, de Chesse R, Tolou H, de Micco P, Gould EA, de Lamballerie X (2000) Phylogeny of the genus flavivirus using complete coding sequences of arthropod-borne viruses and viruses with no known vector. J Gen Virol 81 Pt 9: 2339
4. Bird AP (1986) CpG-rich islands and the function of DNA methylation. Nature 321: 209-213
5. Blackwell JL, Brinton MA (1995) BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA. J Virol 69: 5650-5658
6. Brinton MA, Fernandez AV, Dispoto JH (1986) The 3′-nucleotides of flavivirus genomic RNA form a conserved secondary structure. Virology 153: 113-121
7. Brinton MA, Dispoto JH (1988) Sequence and secondary structure analysis of the 5′-terminal region of flavivirus genome RNA. Virology 162: 290-299
8. Cammisa-Parks H, Cisar LA, Kane A, Stollar V (1992) The complete nucleotide sequence of cell fusing agent (CFA): homology between the nonstructural proteins encoded by CFA and the nonstructural proteins encoded by arthropod-borne flaviviruses. Virology 189: 511-524
9. Cecilia D, Gould EA (1991) Nucleotide changes responsible for loss of neuroinvasiveness in Japanese encephalitis virus neutralization-resistant mutants. Virology 181: 70-77
10. Chambers TJ, Hahn CS, Galler R, Rice CM (1990) Flavivirus genome organization, expression, and replication. Annu Rev Microbiol 44: 649-688
11. Chambers TJ, Grakoui A, Rice CM (1991) Processing of the yellow fever virus nonstructural polyprotein: a catalytically active NS3 proteinase domain and NS2B are required for cleavages at dibasic sites. J Virol 65: 6042-6050
12. Chen CJ, Kuo MD, Chien LJ, Hsu SL, Wang YM, Lin JH (1997) RNA-protein interactions: involvement of NS3, NS5, and 3′ noncoding regions of Japanese encephalitis virus genomic RNA. J Virol 71: 3466-3473
13. Devereux J (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395
14. Egloff MP, Benarroch D, Selisko B, Romette JL, Canard B (2002) An RNA cap (nucleoside-2′-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization. EMBO J 21: 2757-2768
15. Falgout B, Pethel M, Zhang YM, Lai CJ (1991) Both nonstructural proteins NS2B and NS3 are required for the proteolytic processing of dengue virus nonstructural proteins. J Virol 65: 2467-2475
16. Flamand M, Megret F, Mathieu M, Lepault J, Rey FA, Deubel V (1999) Dengue virus type 1 nonstructural glycoprotein NS1 is secreted from mammalian cells as a soluble hexamer in a glycosylation-dependent fashion. J Virol 73: 6104-6110
17. Gorbalenya AE, Donchenko AP, Koonin EV, Blinov VM (1989) N-terminal domains of putative helicases of flavi- and pestiviruses may be serine proteases. Nucleic Acids Res 17: 3889-3897
18. Gorbalenya AE, Koonin EV, Donchenko AP, Blinov VM (1989) Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 17: 4713-4730
19. Gould EA, Buckley A, Barrett AD, Cammack N (1986) Neutralizing (54 K) and non-neutralizing (54 K and 48 K) monoclonal antibodies against structural and non-structural yellow fever virus proteins confer immunity in mice. J Gen Virol 67: 591-595
20. Hahn CS (1987) Comparison of the virulent Asibi strain of yellow fever virus with the 17D vaccine strain derived from it. Proc Natl Acad Sci USA 84: 2019-2023
21. Hahn CS, Hahn YS, Rice CM, Lee E, Dalgamo L, Strauss EG, Strauss JH (1987) Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences. J Mol Biol 198: 33-41
22. Holzmann H, Heinz FX, Mandl CW, Guirakhoo F, Kunz C (1990) A single amino acid substitution in envelope protein E of tick-borne encephalitis virus leads to attenuation in the mouse model. J Virol 64: 5156-5159
23. Igarashi A, Harrap KA, Casals J, Stollar V (1976) Morphological, biochemical, and serological studies on a viral agent (CFA) which replicates in and causes fusion of Aedes albopictus (Singh) cells. Virology 74: 174-187
24. Jenkins GM, Pagel M, Gould EA, de A. Zanotto PM, Holmes EC (2001) Evolution of base composition and codon usage bias in the genus flavivirus. J Mol Evol 52: 383-390
25. Khromykh AA, Meka H, Guyatt KJ, Westaway EG (2001) Essential role of cyclization sequences in flavivirus RNA replication. J Virol 75: 6719-6728
26. Koonin EV (1993) Computer-assisted identification of a putative methyltransferase domain in NS5 protein of flaviviruses and lambda 2 protein of reovirus. J Gen Virol 74: 733-740
27. Kozak M (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44: 283-292
28. Kuno G, Chang GJ, Tsuchiya KR, Karabatsos N, Cropp CB (1998) Phylogeny of the genus Flavivirus. J Virol 72: 73-83
29. Lindenbach BD, Rice CM (1997) trans-Complementation of yellow fever virus NS1 reveals a role in early RNA replication. J Virol 71: 9608-9617
30. Lindenbach BD, Rice CM (1999) Genetic interaction of flavivirus nonstructural proteins NS1 and NS4A as a determinant of replicase function. J Virol 73: 4611-4621
31. Lobigs M, Usha R, Nestorowicz A, Marshall ID, Weir RC, Dalgarno L (1990) Host cell selection of Murray Valley encephalitis virus variants altered at an RGD sequence in the envelope protein and in mouse virulence. Virology 176: 587-595
32. Marin MS, Zanotto PM, Gritsun TS, Gould EA (1995) Phylogeny of TYU, SRE, and CFA virus: different evolutionary rates in the genus Flavivirus. Virology 206: 1133-1139
33. Mathews DH, Sabina J, Zuker M, Turner DH (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288: 911-940
34. Miller BR, Mitchell CJ, Ballinger ME (1989) Replication, tissue tropisms and transmission of yellow fever virus in Aedes albopictus. Trans R Soc Trop Med Hyg 83: 252-255
35. Muylaert IR, Chambers TJ, Galler R, Rice CM (1996) Mutagenesis of the N-linked glycosylation sites of the yellow fever virus NS1 protein: effects on virus replication and mouse neurovirulence. Virology 222: 159-168
36. Muylaert IR, Galler R, Rice CM (1997) Genetic analysis of the yellow fever virus NS1 protein: identification of a temperature-sensitive mutation which blocks RNA accumulation. J Virol 71: 291-298
37. Obijeski JF, Bishop DH, Murphy FA, Palmer EL (1976) Structural proteins of La Crosse virus. J Virol 19: 985-997
38. Proutski V, Gould EA, Holmes EC (1997) Secondary structure of the 3′ untranslated region of flaviviruses: similarities and differences. Nucleic Acids Res 25: 1194-1202
39. Rey FA, Heinz FX, Mandl C, Kunz C, Harrison SC (1995) The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution. Nature 375: 291-298
40. Rice CM, Lenches EM, Eddy SR, Shin S, Sheets RL, Strauss JH (1985) Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science 229: 726-733
41. Rice CM, Strauss JH (1990) Production of flavivirus polypeptides by proteolytic processing. Seminars in Virology 1: 357-367
42. Roehrig JT, Hunt AR, Johnson AJ, Hawkes RA (1989) Synthetic peptides derived from the deduced amino acid sequence of the E-glycoprotein of Murray Valley encephalitis virus elicit antiviral antibody. Virology 171: 49-60
43. Schlesinger JJ, Brandriss MW, Cropp CB, Monath TP (1986) Protection against yellow fever in monkeys by immunization with yellow fever virus nonstructural protein NS1. J Virol 60: 1153-1155
44. Schlesinger RW (1971) New opportunities in biological research offered by arthropod cell cultures. I some speculations on the possible role of arthropods in the evolution of arboviruses. Curr Top Microbiol Immunol 55: 241-245
45. Shurtleff AC, Beasley DW, Chen JJ, Ni H, Suderman MT, Wang H, Xu R, Wang E, Weaver SC, Watts DM, Russell KL, Barrett AD (2001) Genetic variation in the 3′ non-coding region of dengue viruses. Virology 281: 75-87
46. Stollar V, Thomas VL (1975) An agent in the Aedes aegypti cell line (Peleg) which causes fusion of Aedes albopictus cells. Virology 64: 367-377
47. Swofford DL (1998) PAUP*: phylogenetic analysis using parsimony (*and other methods), ver. 4.08b. Sinauer Associates, Sunderland, MA
48. Ta M, Vrati S (2000) Mov34 protein from mouse brain interacts with the 3′ noncoding region of Japanese encephalitis virus. J Virol 74: 5108-5115
49. von Heijne G (1984) How signal sequences maintain cleavage specificity. J Mol Biol 173: 243-251
50. Wallner G, Mandl CW, Kunz C, Heinz FX (1995) The flavivirus 3′-noncoding region: extensive size heterogeneity independent of evolutionary relationships among strains of tick-borne encephalitis virus. Virology 213: 169-178
51. Wang E, Weaver SC, Shope RE, Tesh RB, Watts DM, Barrett AD (1996) Genetic variation in yellow fever virus: duplication in the 3′ noncoding region of strains from Africa. Virology 225: 274-281
52. Wengler G, Castle E (1986) Analysis of structural properties which possibly are characteristic for the 3′-terminal sequence of the genome RNA of flaviviruses. J Gen Virol 67: 1183-1188
53. Wengler G, Wengler G (1993) The NS 3 nonstructural protein of flaviviruses contains an RNA triphosphatase activity. Virology 197: 265-273
54. Winkler G, Maxwell SE, Ruemmler C, Stollar V (1989) Newly synthesized dengue-2 virus nonstructural protein NS1 is a soluble protein but becomes partially hydrophobic and membrane-associated after dimerization. Virology 171: 302-305
55. Yoksan S, Bhamarapravati N, Halstead SB (1986) Dengue virus vaccine development: study on biological markers of uncloned dengue 1-4 viruses serially passaged in primary kidney cells. In: Arbovirus Research in Australia, Proceedings of the Fourth Symposium. CSIRO/QIMR, Brisbane, pp 35-38
56. Zuker M, Mathews DH, Turner DH (1999) Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide. In: Barciszewski J, Clark BFC (eds) RNA Biochemistry and Biotechnology. Kluwer Academic Publishers NATO ASI Series, pp 11-43
57. Sang RC, Gichogo A, Gachoya J, Dunster MD, Ofula V, Hunt AR, Crabtree MB, Miller BR, Dunster LM (2003) Isolation of a new flavivirus related to cell fusing agent virus (CFAV) from field-collected flood-water Aedes mosquitoes sampled from a dambo in central Kenya. Arch Virol 148: 1085-1093