Molecular characterization of NBS-LRR-RGAs in the rose genome

Physiologia Plantarum

Volumn 129, Issue 4, 2007, Pages 775-786

  Hattendorf, Anja ^a   Debener, Thomas ^a  

^a LEIBNIZ UNIVERSITY HANNOVER   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; CLONING; OLIGONUCLEOTIDES; PLANTS (BOTANY);

HYBRIDIZATION SIGNALS; NUCLEOTIDE BINDING SITE (NBS); RESISTANCE GENE ANALOGUES (RGA);

GENES;

PRUNUS; PRUNUS CERASUS; ROSA;

EID: 33947284412     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2007.00876.x     Document Type: Article

References (43)

1. Aarts MGM, Lintel-Hekkert BT, Holub EB, Beynon JL, Stiekema WJ, Pereira A (1998) Identification of R-gene homologous DNA fragments genetically linked to disease resistance loci in Arabidopsis thaliana. Mol Plant Microbe Int 11: 251-258
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
3. Bertioli DJ, Leal-Bertioli SCM, Lion MB, Santos VL, Pappas G Jr, Cannon SB, Guimarães PM (2003) A large scale analysis of resistance gene homologues in Arachis. Mol Gen Genomics 270: 34-45
4. Cannon SB, Zhu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J Mol Evol 54: 548-562
5. Di Gaspero G, Cipriani G (2002) Resistance gene analogs are candidate markers for disease resistance genes in grape (Vitis spp.). Theor Appl Genet 106: 163-172
6. Di Gaspero G, Cipriani G (2003) Nucleotide binding site/leucine-rich repeats, Pto-like and receptor-like kinases related to disease resistance in grapevine. Mol Gen Genomics 269: 612-623
7. Dodds PN, Lawrence GJ, Ellis JG (2001) Contrasting modes of evolution acting on the complex N locus for rust resistance in flax. Plant J 25: 439-453
8. Drewes-Alvarez R (1992) Untersuchungen am Pathosystem Sternrußtau (Marssonina rosae Died.) - Rose (Rosa L.). PhD thesis. University of Hamburg, Hamburg, Germany
9. Ellis J, Jones D (1998) Structure and function of proteins controlling strain-specific pathogen resistance in plants. Curr Opin Plant Biol 1: 288-293
10. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791
11. Fluhr R (2001) Sentinels of disease. Plant resistance genes. Plant Physiol 127: 1367-1374
12. Gowda BS, Miller JL, Rubin SS, Sharma DR, Timko MP (2002) Isolation, sequencing, and mapping of resistance gene analogs from cowpea (Vigna unguiculata L.). In: Fatokun CA, Tarawali SA, Singh BB, Kormawa PM, Tamò M (eds) Challenges and Opportunities for Enhancing Sustainable Cowpea Production. Proceedings of the World Cowpea Conference III held at the International Institute of Tropical Agriculture (IITA), Ibadan, Nigeria, 4-8 September 2000. IITA, Ibadan, Nigeria
13. Graham MA, Marek LF, Lohnes D, Cregan P, Shoemaker RC (2000) Expression and genome organisation of resistance gene analogs in soybean. Genome 43: 86-93
14. Gudin S (2000) Rose: genetics and breeding. Plant Breed Rev 17: 159-189
15. Hammond-Kosack KE, Jones JDG (2000) Responses to plant pathogens. In: Buchanan B, Gruissem W, Jones R (eds) Biochemistry & Molecular Biology of Plants. American Society of Plant Physiologists, Rockville, MD, pp 1102-1143
16. Horst RK (1995) Compendium of Rose Diseases. The American Phytopathological Society, St Paul, MN
17. Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogues are conserved and clustered in soybean. Proc Natl Acad Sci USA 93: 11746-11750
18. Kaufmann H, Mattiesch L, Lörz H, Debener T (2003) Construction of a BAC library of Rosa rugosa Thunb. and assembly of a contig spanning Rdr1, a gene that confers resistance to blackspot. Mol Gen Genomics 268: 666-674
19. Kobayashi N, Horikoshi T, Katsuyama H, Handa T, Takayanagi K (1998) A simple and efficient DNA extraction method for plants, especially woody plants. Plant Tissue Cult Biotechnol 4: 76-81
20. Lee S-Y, Seo J-S, Rodriguez-Lanetty M, Lee D-H (2003) Comparative analysis of superfamilies of NBS-encoding resistance gene analogs in cultivated and wild apple species. Mol Gen Genomics 269: 101-108
21. Leister DJ, Kurth DA, Laurie M, Yano T, Sasaki K, Devos A, Graner A, Schulze-Lefert P (1998) Rapid reorganisation of resistance gene homologs in cereal genomes. Proc Natl Acad Sci USA 95: 370-375
22. Linde M, Debener T (2003) Isolation and identification of eight races of powdery mildew of roses (Podosphaera pannosa) (Wallr.; Fr.) de Bary and the genetic analysis of the resistance gene Rpp1. Theor Appl Genet 107: 256-262
23. Linde M, Hattendorf A, Kaufmann H, Debener T (2006) Powdery mildew resistance in roses: QTL mapping in different environments using selective genotyping. Theor Appl Genet 113: 1081-1092
24. Liu J-J, Ekramoddoullah AKM (2003) Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from western white pine (Pinus monticola Dougl. ex. D. Don.). Mol Gen Genomics 270: 432-441
25. Madsen LH, Collins NC, Rakwalska M, Backes G, Sandal N, Krussel L, Jensen J, Waterman EH, Jahoor A, Ayliffe M, Schulze-Lefert P, Stougaard J (2003) Barley disease resistance analogs of the NBS-LRR class: Identification and mapping. Mol Gen Genomics 269: 150-161
26. Meyers BC, Dickermann, AW, Michelmoore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20: 317-332
27. Noir S, Combes M-C, Anthony F, Lashermes P (2001) Origin, diversity and evolution of NBS-type disease resistance gene homologues in coffee trees (Coffea L.). Mol Gen Genomics 265: 654-662
28. Pan Q, Wendel J, Fluhr R (2000) Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes. J Mol Evol 50: 203-213
29. Pflieger S, Lefebvre V, Causse M (2001) The candidate gene approach in plant genetics: a review. Mol Breed 7: 275-291
30. Quint M, Mihaljevic R, Dussle CM, Xu ML, Melchinger AE, Lübberstedt T (2002) Development of RGA-CAPS markers and genetic mapping of candidate genes for sugarcane mosaic virus resistance in maize. Theor Appl Genet 105: 355-363
31. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual, 3rd Edn. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, NY
32. Shen KA, Meyers BC, Islam-Faridi MN, Chin DB, Stelly DB, Michelmore RW (1998) Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol Plant Microbe Interact 11: 815-823
33. Tada Y (1999) PCR-amplified resistance gene analogs link to resistance loci in rice. Breed Sci 49: 267-273
34. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882
35. Tian Y, Fan LJ, Thurau T, Jung C, Cai D (2003) The absence of TIR type resistance gene analogues in the sugar beet (Beta vulgaris L.) genome. J Mol Evol 57: 1-14
36. Toyoda K, Collins NC, Takahasho A, Shirasu K (2002) Resistance and susceptibility of plants to fungal pathogens. Transgenic Res 11: 567-582
37. Von Malek B, Debener T (1998) Genetic analysis of resistance to black spot (Diplocarpon rosae) in tetraploid roses. Theor Appl Genet 96: 228-231
38. Von Malek B, Weber WE, Debener T (2000) Identification of molecular markers linked to Rdr1, a gene conferring resistance to black spot in roses. Theor Appl Genet 101: 977-983
39. Wang S, Xiao X (2002) Isolation and linkage mapping of disease resistance-like sequences from various rice cultivars containing different recognition specificities. Plant Breed 121: 203-209
40. Xu Q, Wen X, Deng X (2005) Isolation of TIR and nonTIR NBS-LRR resistance gene analogues and identification of molecular markers linked to a powdery mildew resistance locus in chestnut rose (Rosa roxburghii Tratt). Theor Appl Genet 111: 819-830
41. Yan Z, Denneboom C, Hattendorf A, Dolstra O, Debener T, Stam P, Visser PB (2005) Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers. Theor Appl Genet 110: 766-777
42. Young ND (2000) The genetic architecture of resistance. Curr Opin Plant Biol 3: 285-290
43. Yu YG, Buss GR, Maroof SMA (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc Natl Acad Sci USA 93: 11751-11756