The study of adaptation and speciation in the genomic era

Journal of Mammalogy

Volumn 88, Issue 1, 2007, Pages 1-4

  Storz, Jay F ^a   Hoekstra, Hopi E ^b  

^a UNIVERSITY OF NEBRASKA   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Adaptation; Genomics; Hybrid zones; Mus; Natural selection; Peromyscus; Quantitative trait locus mapping; Rattus; Reproductive isolation; Speciation

Indexed keywords

ADAPTATION; EVOLUTION; GENOMICS; REPRODUCTIVE ISOLATION; RODENT; SPECIATION (BIOLOGY);

MAMMALIA; MUROIDEA; PEROMYSCUS; RATTUS; RODENTIA;

EID: 33847650026     PISSN: 00222372     EISSN: None     Source Type: Journal    
DOI: 10.1644/06-MAMM-S-232R1.1     Document Type: Review

References (29)

1. BARTON, N. H., AND G. M. HEWITT. 1985. Analysis of hybrid zones. Annual Review of Ecology and Systematics 16:113-148.
2. BARTON, N. H., AND G. M. HEWITT. 1989. Adaptation, speciation, and hybrid zones. Nature 341:497-503.
3. EANES, W. F. 1999. Analysis of selection on enzyme polymorphisms. Annual Review of Ecology and Systematics 30:301-326.
4. GATESY, J., AND W. J. SWANSON. 2007. Adaptive evolution and phylogenetic utility of Acr (acrosin), a rapidly evolving mammalian fertilization gene. Journal of Mammalogy 88:32-42.
5. GIBBS, R. A., ET AL. 2004. Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature 428:493-521.
6. HARR, B. 2006. Genomic islands of differentiation between house mouse subspecies. Genome Research 16:730-737.
7. HOEKSTRA, H. E., R. J. HIRSCHMANN, R. A. BUNDEY, P. A. INSEL, AND J. P. CROSSLAND. 2006. A single amino acid mutation contributes to adaptive beach mouse color pattern. Science 313:101-104.
8. HOEKSTRA, H. E., AND M. W. NACHMAN. 2003. Different genes underlie adaptive melanism in different populations of rock pocket mice. Molecular Ecology 12:1185-1194.
9. IHLE, S., I. RAVAOARIMANANA, M. THOMAS, AND D. TAUTZ. 2006. An analysis of signatures of selective sweeps in natural populations of the house mouse. Molecular Biology and Evolution 23:790-797.
10. KOHN, M. H., H. J. PELZ, AND R. K. WAYNE. 2000. Natural selection mapping of the warfarin-resistance gene. Proceedings of the National Academy of Sciences of the United States of America 97:7911-7915.
11. KOHN, M. H., H. J. PELZ, AND R. K. WAYNE. 2003. Locus-specific genetic differentiation at Rw among warfarin-resistant rat (Rattus norvegicus) populations. Genetics 164:1055-1070.
12. LINDBLAD-TOH, K., ET AL. 2005. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438:803-819.
13. LUIKART, G., P. R. ENGLAND, D. TALLMON, S. JORDAN, AND P. TABERLET. 2003. The power and promise of population genomics: from genotyping to genome typing. Nature Reviews. Genetics 4:981-994.
14. NACHMAN, M. W., H. E. HOEKSTRA, AND S. L. D'AGOSTINO. 2003. The genetic basis of adaptive melanism in pocket mice. Proceedings of the National Academy of Sciences of the United States of America 100:5268-5273.
15. OSTRANDER, E. A., AND R. K. WAYNE. 2005. The canine genome. Genome Research 15:1706-1716.
16. PAYSEUR, B. A., AND H. E. HOEKSTRA. 2005. Signatures of reproductive isolation in patterns of single nucleotide diversity across inbred strains of mice. Genetics 171:1905-1916.
17. PAYSEUR, B. A., J. G. KRENZ, AND M. W. NACHMAN. 2004. Differential patterns of introgression across the X chromosome in a hybrid-zone between two species of house mice. Evolution 58:2064-2078.
18. PAYSEUR, B. A., AND M. W. NACHMAN. 2005. The genomics of speciation: investigating the molecular correlates of X chromosome introgression across the hybrid zone between Mus domesticus and Mus musculus. Biological Journal of the Linnean Society 84:523-534.
19. POLLINGER, J. P., C. D. BUSTAMANTE, A. FLEDEL-ALON, S. SCHMUTZ, M. M. GRAY, AND R. K. WAYNE. 2005. Selective sweep mapping of genes with large phenotypic effects. Genome Research 15:1809-1819.
20. STORZ, J. F. 2005. Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology 14:671-688.
21. STORZ, J. F. 2007. Hemoglobin function and physiological adaptation to hypoxia in high-altitude mammals. Journal of Mammalogy 88:24-31.
22. STORZ, J. F., AND J. M. DUBACH. 2004. Natural selection drives altitudinal divergence at the albumin locus in deer mice, Peromyscus maniculatus. Evolution 58:1342-1352.
23. STORZ, J. F., AND M. W. NACHMAN. 2003. Natural selection on protein polymorphism in the rodent genus Peromyscus: Evidence from interlocus contrasts. Evolution 57:2628-2635.
24. SUMNER, F. B. 1929a. The analysis of a concrete case of intergradation between two subspecies. Proceedings of the National Academy of Sciences of the United States of America 15:110-120.
25. SUMNER, F. B. 1929b. The analysis of a concrete case of intergradation between two subspecies. II. Additional data and interpretations. Proceedings of the National Academy of Sciences of the United States of America 15:481-493.
26. VASEMAGI, A., AND C. R. PRIMMER. 2005. Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies. Molecular Ecology 14:3623-3642.
27. VRANA, P. B. 2007. Genomic imprinting as a mechanism of reproductive isolation in mammals. 88:5-23.
28. WATERSTON, R. H., ET AL. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562.
29. WATT, W. B., AND A. M. DEAN. 2000. Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes. Annual Review of Genetics 34:593-622.