Natural selection on protein polymorphism in the rodent genus Peromyscus: Evidence from interlocus contrasts

Evolution

Volumn 57, Issue 11, 2003, Pages 2628-2635

  Storz, Jay F ^a,b   Nachman, Michael W ^a  

^a University of Arizona   (United States)

^b SAN FRANCISCO STATE UNIVERSITY   (United States)

Author keywords

Adaptation; Albumin; Allozymes; Coalescent; Lewontin Krakauer test; Mice; Neutral theory

Indexed keywords

ADAPTATION; NATURAL SELECTION; PROTEIN; RODENT;

ANIMALIA; CRICETINAE; PEROMYSCUS; RODENTIA;

EID: 0345094914     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2003.tb01505.x     Document Type: Article

References (59)

1. Aquadro, C. F., and J. C. Avise. 1982. An assessment of "hidden" heterogeneity within electromorphs at three enzyme loci in deer mice. Genetics 102:269-284.
2. Avise, J. C., M. H. Smith, and R. K. Selander. 1979. Biochemical polymorphism and systematics in the genus Peromyscus. VII. Geographic differentiation in members of the truei and maniculatus species groups. J. Mammal. 60:177-192.
3. Baccus, R., J. Joule, and W. J. Kimberling. 1980. Linkage and selection analysis of biochemical variants in Peromyscus maniculatus. J. Mammal. 61:423-435.
4. Baker, R. J., L. W. Robbins, F. B. Stangl, Jr., and E. C. Birney. 1983. Chromosomal evidence for a major subdivision in Peromyscus leucopus. J. Mammal. 64:356-359.
5. Beaumont, M. A., and R. A. Nichols. 1996. Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263:1619-1626.
6. Berry, A., and M. Kreitman. 1993. Molecular analysis of an allozyme cline: alcohol dehydrogenase in Drosophila melanogaster on the east coast of North America. Genetics 134:869-893.
7. Blair, W. F. 1950. Ecological factors in speciation of Peromyscus. Evolution 4:253-275.
8. Boone, J. L. 1995. Patterns of temporal and geographic variation in the genetics and morphology of cotton mice (Peromyscus gossypinus). Ph.D. diss. University of Georgia, Athens, GA.
9. Boone, J. L., M. H. Smith, and J. Laerm. 1999. Allozyme variation in the cotton mouse (Peromyscus gossypinus). J. Mammal. 80: 833-844.
10. Bowcock, A. M., J. R. Kidd, J. L. Mountain, J. M. Herbert, L. Carotenuto, K. K. Kidd, and L. L. Cavalli-Sforza. 1991. Drift, admixture, and selection in human evolution: a study with DNA polymorphisms. Proc. Natl. Acad. Sci. USA 88:839-843.
11. Brown, J. H., and C. F. Welser. 1968. Serum albumin polymorphisms in natural and laboratory populations of Peromyscus. J. Mammal. 49:420-426.
12. Bubliy, O. A., B. A. Kalabushkin, and A. G. Imasheva. 1999. Geographic variation of six allozyme loci in Drosophila melanogaster: an analysis of data from different continents. Hereditas 130:25-32.
13. Cavalli-Sforza. L. L. 1966. Population structure and human evolution. Proc. R. Soc. Lond. B 164:362-379.
14. Chappell, M. A., and L. R. G. Snyder. 1984. Biochemical and physiological correlates of α-chain hemoglobin polymorphisms. Proc. Natl. Acad. Sci. USA 81:5484-5488.
15. Cockerham, C. C., and B. S. Weir. 1993. Estimation of gene flow from F-statistics. Evolution 47:855-863.
16. Dawson, W. D. 1982. Protein polymorphisms in American deer mice (Peromyscus) and genetic linkage homology. Acta Theriol. 27:213-230.
17. Dawson, W. D., L. L. Huang, M. R. Felder, and J. B. Shaffer. 1983. Linkage relationships among eleven biochemical loci in Peromyscus. Biochem. Genet. 21:1101-1114.
18. Eanes, W. F. 1987. Allozymes and fitness: evolution of a problem. Trends Ecol. Evol. 2:44-48.
19. _. 1999. Analysis of selection on enzyme polymorphisms. Annu. Rev. Ecol. Syst. 30:301-326.
20. ST estimates. Hum. Genet. 105:567-576.
21. Gillespie, J. H. 1991. The causes of molecular evolution. Oxford Univ. Press, New York.
22. Harris, D., and D. S. Rogers. 1999. Species limits and phylogenetic relationships among populations of Peromyscus furvus. J. Mammal. 80:530-544.
23. Harris, H. 1966. Enzyme polymorphisms in man. Proc. R. Soc. Lond. B 164:298-310.
24. Harrison, R. G. 1977. Parallel variation at an enzyme locus in sibling species of field crickets. Nature 266:168-170.
25. Hill, I. D., R. Hill, and R. L. Holder. 1976. Fitting Johnson curves by moments. Appl. Stat. 25:180-189.
26. Hubby, J. L., and R. C. Lewontin. 1966. A molecular approach to the study of genic heterozygosity in natural populations. I. The number of alleles at different loci in Drosophila pseudoobscura. Genetics 54:577-594.
27. Jensen, J. N., and D. I. Rasmussen. 1971. Serum albumins in natural populations of Peromyscus. J. Mammal. 52:508-514.
28. Katz, L. A. and R. G. Harrison. 1997. Balancing selection on electrophoretic variation of phosphoglucose isomerase in two species of field crickets: Gryllus veletis and G. pennsylvanicus. Genetics 147:609-621.
29. Kimura, M., and T. Ohta. 1971. Theoretical aspects of population genetics. Princeton Univ. Press, Princeton, NJ.
30. Koehn, R. K., A. J. Zera, and J. G. Hall. 1983. Enzyme polymorphism and natural selection. Pp. 115-136 in M. Nei and R. K. Koehn, eds. Evolution of genes and proteins. Sinauer, Sunderland, MA.
31. Lansman, R. A., J. C. Avise, C. F. Aquadro, J. F. Shapira, and S. W. Daniel. 1983. Extensive genetic variation in mitochondrial DNA's among geographic populations of the deer mouse, Peromyscus maniculatus. Evolution 37:1-16.
32. Laurie, C. C., and L. F. Stam. 1994. The effect of an intronic polymorphism on alcohol dehydrogenase expression in Drosophila melanogaster Adh. Proc. Natl. Acad. Sci. USA 85: 5161-5165.
33. Laurie, C. C., J. T. Bridgham, and M. Choudhary. 1991. Associations between DNA sequence variation and variation in expression of the Adh gene in natural populations of Drosophila melanogaster. Genetics 129:489-499.
34. Leigh Brown, A. J. 1977. Physiological correlates of an enzyme polymorphism. Nature 269:803-804.
35. Lewontin, R. C. 1974. The genetic basis of evolutionary change. Columbia Univ. Press, New York.
36. Lewontin, R. C., and J. L. Hubby. 1966. A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura. Genetics 54:595-609.
37. Lewontin, R. C., and J. Krakauer. 1973. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics 74:175-195.
38. Marquardt, R. B. 1976. Linkage and selection component analysis of biochemical variants in the deer mouse (Peromyscus maniculatus). M.S. thesis, Univ. of Colorado, Denver, CO.
39. McDonald, J. H. 1994. Detecting natural selection by comparing geographic variation in protein and DNA polymorphisms. Pp. 88-100 in B. Golding, ed. Non-neutral evolution. Chapman and Hall, New York.
40. Mitton, J. B. 1997. Selection in natural populations. Oxford Univ. Press, New York.
41. Nei, M., and T. Maruyama. 1975. Lewontin-Krakauer test for neubtral genes. Genetics 80:395.
42. Oakeshott, J. G., J. B. Gibson, P. R. Anderson, W. R. Knibb, D. G. Anderson, and G. K. Chambers. 1982. Alcohol dehydrogenase and glycerol-3-phosphate dehydrogenase clines in Drosophila melanogaster on different continents. Evolution 36:86-96.
43. Oakeshott, J. G., G. K. Chambers, J. B. Gibson, W. F. Eanes, and D. A. Willcocks. 1983. Geographic variation in G6PD and PGD allele frequencies in Drosophila melanogaster. Heredity 50: 67-72.
44. Oakeshott, J. G., S. W. McKechnie, and G. K. Chambers. 1984. Population genetics of the metabolically related Adh, Gpdh, and Tpi polymorphisms in Drosophila melanogaster. I. Geographic variation in G6pdh and Tpi allele frequencies in different continents. Genetics 63:21-29.
45. Powers, D. A., T. Lauerman, D. Crawford, and L. DiMichele. 1991. Genetic mechanisms for adapting to a changing environment. Annu. Rev. Genet. 25:629-659.
46. Rank, N. E., and E. P. Dahlhoff. 2002. Allele frequency shifts in response to climate change and physiological consequences of allozyme variation in a montane insect. Evolution 56: 2278-2289.
47. Robbins, L. W., M. H. Smith, M. C. Wooten, and R. K. Selander. 1985. Biochemical polymorphism and its relationship to chromosomal and morphological variation in Peromyscus leucopus and Peromyscus gossypinus. J. Mammal. 66:498-510.
48. Robertson, A. 1975a. Remarks on the Lewontin-Krakauer test. Genetics 80:396.
49. _. 1975b. Gene frequency distributions as a test of selective neutrality. Genetics 81:775-785.
50. Schmidt, P. S., and D. M. Rand. 2001. Adaptive maintenance of genetic polymorphism in an intertidal barnacle: habitat-and life-stage-specific survivorship of Mpi genotypes. Evolution 55: 1336-1344.
51. Schulte, P. M., M. Gomez Chiarri, and D. A. Powers. 1997. Structural and functional differences in the promoter and 5′ flanking region of Ldh-B within and between populations of the teleost Fundulus heteroclitus. Genetics 145:759-769.
52. Selander, R. K., M. H. Smith, S. Y. Yang, W. E. Johnson, and J. B. Gentry. 1971. Biochemical polymorphism and systematics in the genus Peromyscus. I. Variation in the old-field mouse (Peromyscus polionotus). Studies in Genetics VI, Univ. Texas. Publ. 7103:49-90.
53. Smith, M. F. 1979. Geographic variation in genic and morphological characters in Peromyscus californicus. J. Mammal. 60:705-722.
54. Vitalis, R., K. Dawson, and P. Boursot. 2001. Interpretation of variation across marker loci as evidence of selection. Genetics 158:1811-1823.
55. Watt, W. B. 1994. Allozymes in evolutionary genetics - self-imposed burden or extraordinary tool? Genetics 136:11-16.
56. Watt, W. B., and A. M. Dean. 2000. Molecular-functional studies of adaptive genetic variation in prokaryotes and eukaryotes. Annu. Rev. Genet. 34:593-622.
57. +Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
58. Welser, C. F., H. J. Winkelman, E. B. Cutler, and E. Barto. 1965. Albumin variations in the white-footed mouse, Peromyscus. Genetics 52:483.
59. Wright, S. 1943. Isolation by distance. Genetics 16:97-159.