A genetic map of large yellow croaker Pseudosciaena crocea

Aquaculture

Volumn 264, Issue 1-4, 2007, Pages 16-26

  Ning, Yue ^a   Liu, Xiande ^a   Wang, Zhi Yong ^a   Guo, Wei ^a,b   Li, Yiyun ^a   Xie, Fangjing ^a  

^a JIMEI UNIVERSITY   (China)

^b INSTITUTE OF HYDROBIOLOGY   (China)

Author keywords

AFLP; Genetic linkage map; Microsatellite; Pseudosciaena crocea; Sex determination

Indexed keywords

GENETIC MARKER; GENOTYPE; PERCIFORM; SEX DETERMINATION;

PSEUDOSCIAENA CROCEA;

EID: 33847609267     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2006.12.042     Document Type: Article

References (50)

1. Amores A., Force A., Yan Y.L., Joly L., Amemiya C., Fritz A., Ho R.K., Langeland J., Prince V., Wang Y.L., Westerfield M., Ekker M., and Postlethwait J.H. Zebrafish hox clusters and vertebrate genome evolution. Science 282 (1998) 1711-1714
2. Barendse W., Armitage S.M., Kossarek L.M., Shalom A., Kirkpatrick B.W., Ryan A.M., Clayton D., Li L., Neibergs H.L., Zhang N., Grosse W.M., Weiss J., Creighton P., McCarthy F., Ron M., Teale A.J., Fries R., McGraw R.A., Moore S.S., Georges M., Soller M., Womack J.E., and Hetzel D.J.S. A genetic linkage map of the bovine genome. Nat. Genet. 6 (1994) 227-235
3. Chakravarti A., Lasher L.K., and Reefer J.E. A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128 (1991) 175-182
4. Devlin R.H., and Nagahama Y. Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 208 (2002) 191-364
5. Dib C., Faure S., Fizames C., Samson D., Drouot N., Vignal A., Millasseau P., Marc S., Kazan J., Seboun E., Lathrop M., Gyapay G., Morissette J., and Weissenbach J. A comprehensive genetic map of the human genome based on 5246 microsatellites. Nature 380 (1996) 152-154
6. Dietrich W.F., Miller J., Steen R., Merchant M.A., DamronBoles D., Husain Z., Dredge R., Daly M.J., Ingalls K.A., and O'Connor T.J. A comprehensive genetic map of the mouse genome. Nature 380 (1996) 149-152
7. Felip A., Young W.P., Wheeler P.A., and Thorgaard G.H. An AFLP-based approach for the identification of sex-linked markers in rainbow trout (Oncorhynchus mykiss). Aquaculture 247 (2005) 35-43
8. Feng Z., and Cao Q. Ichthyology (1979), Agricultural Press House, Beijing, China 154-155 (in Chinese)
9. Fishman L., Kelly A.J., Morgan E., and Willis J.H. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159 (2001) 1701-1716
10. Fjalestad K.T., Moen T., and Gomez-Raya L. Prospects for genetic technology in salmon breeding programmes. Aquac. Res. 34 (2003) 397-406
11. Fuji K., Kobayashi K., Hasegawa O., Coimbra M.R.M., Sakamoto T., and Okamoto N. Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus). Aquaculture 254 (2006) 203-210
12. Garber A.F., and Sullivan C.V. Selective breeding for the hybrid striped bass (Morone chrysops, Rafinesque × M. saxatilis, Walbaum) industry: status and perspectives. Aquac. Res. 37 (2006) 319-338
13. Grattapaglia D., and Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137 (1994) 1121-1137
14. Groenen M.A.M., Cheng H.H., Bumstead N., Benkel B.F., Briles W.E., Burke T., Burt D.W., Crittenden L.B., Dodgson J., Hillel J., Lamont S., Leon A.P., Soller M., Takahashi H., and Vignal A. A consensus linkage map of the chicken genome. Genome Res. 10 (2000) 137-147
15. Guo W., Wang Z., Wang Y., and Gui J. Isolation of microsatellite markers in large yellow croaker by using FIASCO method. Program & Abstracts of the 4th Marine Biology and Biotechnology Symposium. April 21-25, 2004, Hong Kong (2004) 132
16. Guo W., Wang Z., Wang Y., Zhang Z., and Gui J. Isolation and characterization of six microsatellite markers in the large yellow croaker (Pseudosciaena crocea Richardson). Mol. Ecol. Notes 5 (2005) 369-371
17. Jackson T.R., Ferguson M.M., Danzmann R.G., Fishback A.G., Ihssen P.E., O'Connell M., and Crease T.J. Identification of two QTL influencing upper temperature tolerance in three rainbow trout(Oncorhynnchus mykiss) half-sib families. Heredity 80 (1998) 143-151
18. Kai W., Kikuchi K., Fujita M., Suetake H., Fujiwara A., Yoshiura Y., Ototake M., Venkatesh B., Miyaki K., and Suzuki Y. A genetic linkage map for the tiger pufferfish, Takifugu rubripes. Genetics 171 (2005) 227-238
19. Kocher T.D., Lee W.J., Sobolewska H., Penman D., and McAndrew B. A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148 (1998) 1225-1232
20. Kosambi D.D. The estimation of map distances from recombination values. Ann. Eugen. 12 (1944) 172-175
21. Lande R., and Thompson R. Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics 124 (1990) 743-756
22. Lee B.Y., Lee W.J., Streelman J.T., Carleton K.L., Howe A.E., Hulata G., Slettan A., Stern J.E., Terai Y., and Kocher T.D. A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170 (2005) 237-244
23. Li L., and Guo X. AFLP-based genetic linkage maps of the Pacific oyster Crassostra gigas, Thunberg. Mar. Biotechnol. 6 (2004) 26-36
24. Li Y., Byrne K., Miggiano E., Whan V., Moore S., Keys S., Crocos P., Preston N., and Lehnert S. Genetic mapping of the kuruma prawn Penaeus japonicus using AFLP markers. Aquaculture 219 (2003) 143-156
25. Liu Z., Karsi A., Li P., Cao D., and Dunham R. An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165 (2003) 687-694
26. Liu X., Liu X., Guo X., Gao Q., and Zhang G. A preliminary genetic linkage map of the pacific abalone Haliotis discus hannai Ino. Mar. Biotechnol. 8 (2006) 386-397
27. Manly K.F., Cudmore R.H., and Meer J.M. Map Manager QTX, cross-platform software for genetic mapping. Mamm. Genome 12 (2001) 930-932
28. Moen T., Hoyheim B., Munck H., and Gomez-Raya L. A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim. Genet. 35 (2004) 81-92
29. Naruse K., Fukamachi S., Mitani H., Kondo M., Matsuoka T., Kondo S., Hanamura N., Morita Y., Hasegawa K., Nishigaki R., Shimada A., Wada H., Kusakabe T., Suzuki N., Kinoshita M., Kanamori A., Terado T., Kimura H., Nonaka M., and Shima A. A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154 (2000) 1773-1784
30. O'Malley K.G., Sakamoto T., Danzmann R., and Ferguson M. Quantitative trait loci for spawning time and body weight in rainbow trout: testing for conserved effects across ancestrally duplicated chromosomes. J. Heredity 94 (2003) 273-284
31. Ozaki A., Sakamoto T., Khoo S.K., Nakamura K., Coimbra M.R.M., Akutsu T., and Okamoto N. Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genomics 265 (2001) 23-31
32. Postlethwait J.H., Johnson S.L., Midson C.N., Talbot W.S., Gates M., Ballinger E.W., Africa D., Andrews R., Carl T., Eisen J.S., Horne S., Kimmel C.B., Hutchinson M., Johnson M., and Rodriguez A. A genetic linkage map for the zebrafish. Science 264 (1994) 699-703
33. Quan C., Wang J., Ding S., Su Y., and Yao J. The Êaryotypes of Pseudosciaena crocea (Richardson). J. Xiamen University (Nat. Sci. Ed.) 29 (2000) 107-110 (in Chinese, with English abstract)
34. Remington D.L., Whetten R.W., Liu B.H., and O'Malley D.M. Construction of an AFLP genetic map with nearly complete genome coverage in Pinus taeda. Theor. Appl. Genet. 98 (1999) 1279-1292
35. Richardson J. Report on the ichthyology of the seas of China and Japan. Brit. Ass. Adv. Sci. Rep. 15th Meeting (1845) (1846) 187-320
36. Robison B.D., Wheeler P.A., Sundin K., Sikka P., and Thorgaard G.H. Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Heredity 92 (2001) 16-22
37. Sakamoto T., Danzmann R.G., Okamoto N., Ferguson M.M., and Ihssen P.E. Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchus mykiss). Aquaculture 173 (1999) 33-43
38. Sakamoto T., Danzmann R.G., Gharbi K., Howard P., Ozaki A., Khoo S.K., Woram R.A., Okamoto N., Ferguson M.M., Holm L.E., Guyomard R., and Hoyheim B. A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155 (2000) 1331-1345
39. Singer A., Perlman H., Yan Y., Walker C., Corley-Smith G., Brandhorst B., and Postlethwait J. Sex-specific recombination rates in Zebrafish (Danio rerio). Genetics 160 (2002) 649-657
40. Thorgaard G.H. Heteromorphic sex chromosomes in male rainbow trout. Science 196 (1977) 900-902
41. Voorrips R.E. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Heredity 93 (2002) 77-78
42. Vos P., Hogers R., Bleeker M., Reijans M., Lee T., Hornes M., Frijters A., Pot J., Paleman J., Kuiper M., and Zabeau M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23 (1995) 4407-4414
43. Waldbieser G.C., Bosworth B.G., Nonneman D.J., and Wolters W.R. A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 158 (2001) 727-734
44. Wang Z., Jayasankar P., Khoo S.K., Nakamura K., Sumantadinata K., Carman O., and Okamoto N. AFLP fingerprinting reveals genetic variability in common carp stocks from Indonesia. Asian Fish. Sci. 13 (2000) 139-147
45. Wang Z., Wang Y., Lin L., Khoo S., and Okamoto N. Genetic polymorphisms in wild and cultured large yellow croaker Pseudosciaena crocea using AFLP fingerprinting. J. Fish. Sci. Chin. 9 (2002) 199-202 (in Chinese, with English abstract)
46. Wang Z.Y., Tsoi K.H., and Chu K.H. Applications of AFLP technology in genetic and phylogenetic analysis of penaeid shrimp. Biochem. Syst. Ecol. 32 (2004) 399-407
47. Wang L., Song L., Chang Y., Xu W., Ni D., and Guo X. A preliminary genetic map of Zhikong scallop (Chlamys farreri Jones et Preston 1904). Aquac. Res. 36 (2005) 643-653
48. Woods I.G., Kelly P.D., Chu F., Ngo-Hazelett P., Yan Y., Huang H., Postlethwait J.H., and Talbot W.S. A comparative map of the zebrafish genome. Genome Res. 10 (2000) 1903-1914
49. Xie F., Wang Z., and Liu J. Induction of diploid gynogenesis in large yellow croaker, Pseudosciaena crocea. Abstracts of the 4th Marine Biology and Biotechnology Symposium. April 21-25, 2004. Hong Kong (2004)
50. Young W.P., Wheeler P.A., Coryell V.H., Keim P., and Thorgaard G.H. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148 (1998) 839-850