A single-molecule barcoding system using nanoslits for DNA analysis

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 8, 2007, Pages 2673-2678

  Jo, Kyubong ^a   Dhingra, Dalia M ^a   Odijk, Theo ^b   De Pablo, Juan J ^c   Graham, Michael D ^c   Runnheim, Rod ^a   Forrest, Dan ^a   Schwartz, David C ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^c University of Wisconsin Madison   (United States)

Author keywords

DNA labeling; Genomics; Nanofabrication; Polymer confinement

Indexed keywords

DNA; POLYMER;

ARTICLE; DNA DETERMINATION; FLUORESCENCE MICROSCOPY; GENOMICS; IMAGE PROCESSING; MOLECULE; NANOTECHNOLOGY; PRIORITY JOURNAL;

BIOPOLYMERS; BUFFERS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA; DNA, BACTERIAL; DNA, VIRAL; FLUORESCENCE RESONANCE ENERGY TRANSFER; FLUORESCENT DYES; NANOTECHNOLOGY; NUCLEIC ACID CONFORMATION; OSMOLAR CONCENTRATION;

EID: 33847316542     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0611151104     Document Type: Article

References (38)

1. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, et al. (2005) Nature 437:376-380.
2. Shendure J, Porreca GJ, Reppas NB, Lin XX, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005) Science 309:1728-1732.
3. Dimalanta ET, Lim A, Runnheim R, Lamers C, Churas C, Forrest DK, de Pablo JJ, Graham MD, Coppersmith SN, Goldstein S, et al. (2004) Anal Chem 76:5293-5301.
4. Jing J, Reed J, Huang J, Hu X, Clarke V, Edington J, Housman D, Anantharaman TS, Huff EJ, Mishra B, et al. (1998) Proc Natl Acad Sci USA 95:8046-8051.
5. Schwartz DC, Koval M (1989) Nature 338:520-522.
6. Guo XH, Huff EJ, Schwartz DC (1992) Nature 359:783-784.
7. Volkmuth WD, Austin RH (1992) Nature 358:600-602.
8. Chan EY, Goncalves NM, Haeusler RA, Hatch AJ, Larson JW, Maletta AM, Yantz GR, Carstea ED, Fuchs M, Wong GG, et al. (2004) Genome Res 14:1137-1146.
9. Cao H, Yu ZN, Wang J, Tegenfeldt JO, Austin RH, Chen E, Wu W, Chou SY (2002) Appl Phys Lett 81:174-176.
10. Tegenfeldt JO, Prinz C, Cao H, Chou S, Reisner WW, Riehn R, Wang YM, Cox EC, Sturm JC, Silberzan P, et al. (2004) Proc Natl Acad Sci USA 101:10979-10983.
11. Manz A, Miyahara Y, Miura J, Watanabe Y, Miyagi H, Sato K (1990) Sens Actuators B 1:249-255.
12. Effenhauser CS, Bruin GJM, Paulus A, Ehrat M (1997) Anal Chem 69:3451-3457.
13. Chou SY, Krauss PR, Renstrom PJ (1995) Appl Phys Lett 67:3114-3116.
14. Whitesides GM, Ostuni E, Takayama S, Jiang XY, Ingber DE (2001) Annu Rev Biomed Eng 3:335-373.
15. Kumar A, Biebuyck HA, Abbott NL, Whitesides GM (1992) J Am Chem Soc 114:9188-9189.
16. Delamarche E, Bernard A, Schmid H, Michel B, Biebuyck H (1997) Science 276:779-781.
17. Duffy DC, McDonald JC, Schueller OJA, Whitesides GM (1998) Anal Chem 70:4974-4984.
18. Odom TW, Thalladi VR, Love JC, Whitesides GM (2002) J Am Chem Soc 124:12112-12113.
19. Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou SG, Allen AE, Apt KE, Bechner M, et al. (2004) Science 306:79-86.
20. Zhou S, Herschleb J, Schwartz DC (2007) New Methods for DNA Sequencing (Elsevier, Amsterdam).
21. Baumann CG, Smith SB, Bloomfield VA, Bustamante C (1997) Proc Natl Acad Sci USA 94:6185-6190.
22. Schellman JA (1974) Biopolymers 13:217-226.
23. Skolnick J, Fixman M (1977) Macromolecules 10:944-948.
24. Odijk T (1977) J Polym Sci B Polym Phys 15:477-483.
25. Odijk T (1983) Macromolecules 16:1340-1344.
26. Reisner W, Morton KJ, Riehn R, Wang YM, Yu ZN, Rosen M, Sturm JC, Chou SY, Frey E, Austin RH (2005) Phys Rev Lett 94:196101.
27. Riehn R, Lu MC, Wang YM, Lim SF, Cox EC, Austin RH (2005) Proc Natl Acad Sci USA 102:10012-10016.
28. Heiter DF, Lunnen KD, Wilson GG (2005) J Mol Biol 348:631-640.
29. Brochard F, de Gennes PG (1977) J Chem Phys 67:52-56.
30. Odijk T (2006) J Chem Phys 125:1-8.
31. Jendrejack RM, Schwartz DC, Graham MD, de Pablo JJ (2003) J Chem Phys 119:1165-1173.
32. Turban L (1984) J Phys (Paris) 45:347-353.
33. Odijk T (1979) Biopolymers 18:3111-3113.
34. Burkhardt TW (1997) J Phys A Math Gen 30:L167-L172.
35. Burkhardt TW (1995) J Phys A Math Gen 28:L629-L635.
36. Ubbink J, Odijk T (1999) Biophys J 76:2502-2519.
37. Mannion JT, Reccius CH, Cross JD, Craighead HG (2006) Biophys J 90:4538-4545.
38. Lin J, Qi R, Aston C, Jing J, Anantharaman TS, Mishra B, White O, Daly MJ, Minton KW, Venter JC, et al. (1999) Science 285:1558-1562.