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Volumn 195, Issue 5, 2007, Pages 726-733

Long-term intrapatient viral evolution during HIV-2 infection

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

EID: 33847211438     PISSN: 00221899     EISSN: None     Source Type: Journal    
DOI: 10.1086/511308     Document Type: Article
Times cited : (31)

References (50)
  • 1
    • 0023946292 scopus 로고
    • Clinical, hematologic, and immunologic cross-sectional evaluation of individuals exposed to human immunodeficiency virus type-2 (HIV-2)
    • Marlink RG, Ricard D, M'Boup S, et al. Clinical, hematologic, and immunologic cross-sectional evaluation of individuals exposed to human immunodeficiency virus type-2 (HIV-2). AIDS Res Hum Retro-viruses 1988; 4:137-48.
    • (1988) AIDS Res Hum Retro-viruses , vol.4 , pp. 137-148
    • Marlink, R.G.1    Ricard, D.2    M'Boup, S.3
  • 2
    • 0028102110 scopus 로고
    • Reduced rate of disease development after HIV-2 infection as compared to HIV-1
    • Marlink R, Kanki P, Thior I, et al. Reduced rate of disease development after HIV-2 infection as compared to HIV-1. Science 1994; 265:1587-90.
    • (1994) Science , vol.265 , pp. 1587-1590
    • Marlink, R.1    Kanki, P.2    Thior, I.3
  • 3
    • 0000906554 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 2 (HIV-2)
    • Kanki PJ. Human immunodeficiency virus type 2 (HIV-2). AIDS Rev 1999; 1:101-8.
    • (1999) AIDS Rev , vol.1 , pp. 101-108
    • Kanki, P.J.1
  • 4
    • 0027972124 scopus 로고
    • HIV-2-infected patients survive longer than HIV-1-infected patients
    • Whittle H, Morris J, Todd J, et al. HIV-2-infected patients survive longer than HIV-1-infected patients. AIDS 1994; 8:1617-20.
    • (1994) AIDS , vol.8 , pp. 1617-1620
    • Whittle, H.1    Morris, J.2    Todd, J.3
  • 5
    • 0027482122 scopus 로고
    • Cellular and plasma viral load in patients infected with HIV-2
    • Simon F, Matheron S, Tamalet C, et al. Cellular and plasma viral load in patients infected with HIV-2. AIDS 1993; 7:1411-7.
    • (1993) AIDS , vol.7 , pp. 1411-1417
    • Simon, F.1    Matheron, S.2    Tamalet, C.3
  • 6
    • 0033370597 scopus 로고    scopus 로고
    • Lower human immunodeficiency virus (HIV) type 2 viral load reflects the difference in pathogenicity of HIV-1 and HIV-2
    • Popper SJ, Sarr AD, Travers KU, et al. Lower human immunodeficiency virus (HIV) type 2 viral load reflects the difference in pathogenicity of HIV-1 and HIV-2. J Infect Dis 1999; 180:1116-21.
    • (1999) J Infect Dis , vol.180 , pp. 1116-1121
    • Popper, S.J.1    Sarr, A.D.2    Travers, K.U.3
  • 7
    • 0034722743 scopus 로고    scopus 로고
    • Plasma viral load in HIV-1 and HIV-2 singly and dually infected individuals in Guinea-Bissau, West Africa: Significantly lower plasma virus set point in HIV-2 infection than in HIV-1 infection
    • Andersson S, Norrgren H, da Silva Z, et al. Plasma viral load in HIV-1 and HIV-2 singly and dually infected individuals in Guinea-Bissau, West Africa: significantly lower plasma virus set point in HIV-2 infection than in HIV-1 infection. Arch Intern Med 2000; 160:3286-93.
    • (2000) Arch Intern Med , vol.160 , pp. 3286-3293
    • Andersson, S.1    Norrgren, H.2    da Silva, Z.3
  • 8
    • 0342632769 scopus 로고    scopus 로고
    • Low plasma human immunodeficiency virus type 2 viral load is independent of proviral load: Low virus production in vivo
    • Popper SJ, Sarr AD, Gueye-Ndiaye A, Mboup S, Essex ME, Kanki PJ. Low plasma human immunodeficiency virus type 2 viral load is independent of proviral load: low virus production in vivo. J Virol 2000; 74:1554-7.
    • (2000) J Virol , vol.74 , pp. 1554-1557
    • Popper, S.J.1    Sarr, A.D.2    Gueye-Ndiaye, A.3    Mboup, S.4    Essex, M.E.5    Kanki, P.J.6
  • 9
    • 0041867779 scopus 로고    scopus 로고
    • Plasma viral load, CD4 cell percentage, HLA and survival of HIV-1, HIV-2, and dually infected Gambian patients
    • Alabi AS, Jaffar S, Ariyoshi K, et al. Plasma viral load, CD4 cell percentage, HLA and survival of HIV-1, HIV-2, and dually infected Gambian patients. AIDS 2003;17:1513-20.
    • (2003) AIDS , vol.17 , pp. 1513-1520
    • Alabi, A.S.1    Jaffar, S.2    Ariyoshi, K.3
  • 10
    • 0028170069 scopus 로고
    • HIV type 2 proviral load measured by quantitative polymerase chain reaction correlates with CD4+ lymphopenia in HIV type 2-infected individuals
    • Berry N, Ariyoshi K, Jobe O, et al. HIV type 2 proviral load measured by quantitative polymerase chain reaction correlates with CD4+ lymphopenia in HIV type 2-infected individuals. AIDS Res Hum Retroviruses 1994; 10:1031-7.
    • (1994) AIDS Res Hum Retroviruses , vol.10 , pp. 1031-1037
    • Berry, N.1    Ariyoshi, K.2    Jobe, O.3
  • 11
    • 12644254726 scopus 로고    scopus 로고
    • HIV-2 genetic variation and DNA load in asymptomatic carriers and AIDS cases in Guinea-Bissau
    • Norrgren H, Marquina S, Leitner T, et al. HIV-2 genetic variation and DNA load in asymptomatic carriers and AIDS cases in Guinea-Bissau. J Acquir Immune Defic Syndr Hum Retrovirol 1997; 16:31-8.
    • (1997) J Acquir Immune Defic Syndr Hum Retrovirol , vol.16 , pp. 31-38
    • Norrgren, H.1    Marquina, S.2    Leitner, T.3
  • 12
    • 0032519395 scopus 로고    scopus 로고
    • Shankarappa R, Gupta P, Learn GH Jr, et al. Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles. Virology 1998; 241:251-9.
    • Shankarappa R, Gupta P, Learn GH Jr, et al. Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles. Virology 1998; 241:251-9.
  • 13
    • 0032710838 scopus 로고    scopus 로고
    • Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
    • Shankarappa R, Margolick JB, Gange SJ, et al. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J Virol 1999; 73:10489-502.
    • (1999) J Virol , vol.73 , pp. 10489-10502
    • Shankarappa, R.1    Margolick, J.B.2    Gange, S.J.3
  • 15
    • 27344451554 scopus 로고    scopus 로고
    • Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort
    • Mikhail M, Wang B, Lemey P, et al. Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort. Retrovirology 2005; 2:41.
    • (2005) Retrovirology , vol.2 , pp. 41
    • Mikhail, M.1    Wang, B.2    Lemey, P.3
  • 16
    • 0031058043 scopus 로고    scopus 로고
    • Evolution of human immunodeficiency virus type 1 env sequence variation in patients with diverse rates of disease progression and T-cell function
    • McDonald RA, Mayers DL, Chung RC, et al. Evolution of human immunodeficiency virus type 1 env sequence variation in patients with diverse rates of disease progression and T-cell function. J Virol 1997; 71:1871-9.
    • (1997) J Virol , vol.71 , pp. 1871-1879
    • McDonald, R.A.1    Mayers, D.L.2    Chung, R.C.3
  • 17
    • 13144256774 scopus 로고    scopus 로고
    • Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline
    • Markham RB, Wang WC, Weisstein AE, et al. Patterns of HIV-1 evolution in individuals with differing rates of CD4 T cell decline. Proc Natl Acad Sci USA 1998; 95:12568-73.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 12568-12573
    • Markham, R.B.1    Wang, W.C.2    Weisstein, A.E.3
  • 18
    • 0031060165 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease
    • Ganeshan S, Dickover RE, Korber BT, Bryson YJ, Wolinsky SM. Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease. J Virol 1997; 71:663-77.
    • (1997) J Virol , vol.71 , pp. 663-677
    • Ganeshan, S.1    Dickover, R.E.2    Korber, B.T.3    Bryson, Y.J.4    Wolinsky, S.M.5
  • 19
    • 0032902701 scopus 로고    scopus 로고
    • Host-specific modulation of the selective constraints driving human immunodeficiency virus type 1 env gene evolution
    • Bagnarelli P, Mazzola F, Menzo S, Montroni M, Butini L, Clementi M. Host-specific modulation of the selective constraints driving human immunodeficiency virus type 1 env gene evolution. J Virol 1999; 73:3764-77.
    • (1999) J Virol , vol.73 , pp. 3764-3777
    • Bagnarelli, P.1    Mazzola, F.2    Menzo, S.3    Montroni, M.4    Butini, L.5    Clementi, M.6
  • 20
    • 0030947397 scopus 로고    scopus 로고
    • Divergent patterns of progression to AIDS after infection from the same source: Human immunodeficiency virus type 1 evolution and antiviral responses
    • Liu SL, Schacker T, Musey L, et al. Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses. J Virol 1997; 71:4284-95.
    • (1997) J Virol , vol.71 , pp. 4284-4295
    • Liu, S.L.1    Schacker, T.2    Musey, L.3
  • 21
    • 15844385082 scopus 로고    scopus 로고
    • Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection
    • Wolinsky SM, Korber BT, Neumann AU, et al. Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection. Science 1996; 272:537-42.
    • (1996) Science , vol.272 , pp. 537-542
    • Wolinsky, S.M.1    Korber, B.T.2    Neumann, A.U.3
  • 23
    • 0030820346 scopus 로고    scopus 로고
    • Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS
    • Delwart EL, Pan H, Sheppard HW, et al. Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS. J Virol 1997; 71:7498-508.
    • (1997) J Virol , vol.71 , pp. 7498-7508
    • Delwart, E.L.1    Pan, H.2    Sheppard, H.W.3
  • 24
    • 0030917941 scopus 로고    scopus 로고
    • In vivo sequence variability of human immunodeficiency virus type 1 envelope gp120: Association of V2 extension with slow disease progression
    • Shioda T, Oka S, Xin X, et al. In vivo sequence variability of human immunodeficiency virus type 1 envelope gp120: association of V2 extension with slow disease progression. J Virol 1997; 71:4871-81.
    • (1997) J Virol , vol.71 , pp. 4871-4881
    • Shioda, T.1    Oka, S.2    Xin, X.3
  • 25
    • 0028826072 scopus 로고
    • Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period
    • Lukashov VV, Kuiken CL, Goudsmit J. Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J Virol 1995; 69:6911-6.
    • (1995) J Virol , vol.69 , pp. 6911-6916
    • Lukashov, V.V.1    Kuiken, C.L.2    Goudsmit, J.3
  • 26
    • 0029946533 scopus 로고    scopus 로고
    • Pattern of gp120 sequence divergence linked to a lack of clinical progression in human immunodeficiency virus type 1 infection
    • Wang WK, Essex M, McLane MF, et al. Pattern of gp120 sequence divergence linked to a lack of clinical progression in human immunodeficiency virus type 1 infection. Proc Natl Acad Sci USA 1996; 93:6693-7.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 6693-6697
    • Wang, W.K.1    Essex, M.2    McLane, M.F.3
  • 27
    • 0030947411 scopus 로고    scopus 로고
    • Evolution of human immunodeficiency virus type 1 in perinatally infected infants with rapid and slow progression to disease
    • Salvatori F, Masiero S, Giaquinto C, et al. Evolution of human immunodeficiency virus type 1 in perinatally infected infants with rapid and slow progression to disease. J Virol 1997; 71:4694-706.
    • (1997) J Virol , vol.71 , pp. 4694-4706
    • Salvatori, F.1    Masiero, S.2    Giaquinto, C.3
  • 28
    • 0036838723 scopus 로고    scopus 로고
    • Intrapatient diversity and its correlation with viral setpoint in human immunodeficiency virus type 1 CRF02_A/G-IbNG infection
    • Mani I, Gilbert P, Sankale JL, Eisen G, Mboup S, Kanki PJ. Intrapatient diversity and its correlation with viral setpoint in human immunodeficiency virus type 1 CRF02_A/G-IbNG infection. J Virol 2002; 76:10745-55.
    • (2002) J Virol , vol.76 , pp. 10745-10755
    • Mani, I.1    Gilbert, P.2    Sankale, J.L.3    Eisen, G.4    Mboup, S.5    Kanki, P.J.6
  • 29
    • 0028979184 scopus 로고
    • Intrapatient variability of the human immunodeficiency virus type 2 envelope V3 loop
    • Sankale JL, de la Tour RS, Renjifo B, et al. Intrapatient variability of the human immunodeficiency virus type 2 envelope V3 loop. AIDS Res Hum Retroviruses 1995; 11:617-23.
    • (1995) AIDS Res Hum Retroviruses , vol.11 , pp. 617-623
    • Sankale, J.L.1    de la Tour, R.S.2    Renjifo, B.3
  • 31
    • 0035511983 scopus 로고    scopus 로고
    • Gottlieb GS, Mullins JI. Re: follow-up study of intrahost HIV type 2 variability reveals discontinuous evolution of C2V3 sequences. AIDS Res Hum Retroviruses 2001; 17:1563-5, 1567.
    • Gottlieb GS, Mullins JI. Re: follow-up study of intrahost HIV type 2 variability reveals discontinuous evolution of C2V3 sequences. AIDS Res Hum Retroviruses 2001; 17:1563-5, 1567.
  • 32
    • 14544306887 scopus 로고    scopus 로고
    • Evidence for negative selective pressure in HIV-2 evolution in vivo
    • Barroso H, Taveira N. Evidence for negative selective pressure in HIV-2 evolution in vivo. Infect Genet Evol 2005; 5:239-46.
    • (2005) Infect Genet Evol , vol.5 , pp. 239-246
    • Barroso, H.1    Taveira, N.2
  • 33
    • 0026540152 scopus 로고
    • Prevalence and risk determinants of human immunodeficiency virus type 2 (HIV-2) and human immunodeficiency virus type 1 (HIV-1) in west African female prostitutes
    • Kanki P, M'Boup S, Marlink R, et al. Prevalence and risk determinants of human immunodeficiency virus type 2 (HIV-2) and human immunodeficiency virus type 1 (HIV-1) in west African female prostitutes. Am J Epidemiol 1992; 136:895-907.
    • (1992) Am J Epidemiol , vol.136 , pp. 895-907
    • Kanki, P.1    M'Boup, S.2    Marlink, R.3
  • 34
    • 33847218102 scopus 로고    scopus 로고
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997 25:4876-82.
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL
  • 35
    • 0010956475 scopus 로고
    • Interactive analysis of phylogeny and character evolution using the computer program MacClade
    • Maddison WP, Maddison DR. Interactive analysis of phylogeny and character evolution using the computer program MacClade. Folia Primatol (Basel) 1989; 53:190-202.
    • (1989) Folia Primatol (Basel) , vol.53 , pp. 190-202
    • Maddison, W.P.1    Maddison, D.R.2
  • 36
    • 84873805246 scopus 로고    scopus 로고
    • Available at:, Accessed 10 January 2007
    • Los Alamos HIV Databases. Available at: http://www.hiv.lanl.gov. Accessed 10 January 2007.
    • Los Alamos HIV Databases
  • 37
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 2002; 18:502-4.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 38
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. Estimating the pattern of nucleotide substitution. J Mol Evol 1994; 39:105-11.
    • (1994) J Mol Evol , vol.39 , pp. 105-111
    • Yang, Z.1
  • 39
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004; 5:150-63.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 40
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993; 10:512-26.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 41
    • 9744280420 scopus 로고    scopus 로고
    • Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin
    • Zhang M, Gaschen B, Blay W, et al. Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 2004; 14:1229-46.
    • (2004) Glycobiology , vol.14 , pp. 1229-1246
    • Zhang, M.1    Gaschen, B.2    Blay, W.3
  • 42
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986; 3:418-26.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 43
    • 0028286120 scopus 로고
    • Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site
    • Ota T, Nei M. Variance and covariances of the numbers of synonymous and nonsynonymous substitutions per site. Mol Biol Evol 1994; 11:613-9.
    • (1994) Mol Biol Evol , vol.11 , pp. 613-619
    • Ota, T.1    Nei, M.2
  • 46
    • 0037302334 scopus 로고    scopus 로고
    • Latency in human immunodeficiency virus type 1 infection: No easy answers
    • Persaud D, Zhou Y, Siliciano JM, Siliciano RE Latency in human immunodeficiency virus type 1 infection: no easy answers. J Virol 2003; 77:1659-65.
    • (2003) J Virol , vol.77 , pp. 1659-1665
    • Persaud, D.1    Zhou, Y.2    Siliciano, J.M.3    Siliciano, R.E.4
  • 47
    • 18144397438 scopus 로고    scopus 로고
    • Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels
    • Chohan B, Lang D, Sagar M, et al. Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1-V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels. J Virol 2005; 79:6528-31.
    • (2005) J Virol , vol.79 , pp. 6528-6531
    • Chohan, B.1    Lang, D.2    Sagar, M.3
  • 48
    • 12144289425 scopus 로고    scopus 로고
    • Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
    • Derdeyn CA, Decker JM, Bibollet-Ruche F, et al. Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 2004; 303:2019-22.
    • (2004) Science , vol.303 , pp. 2019-2022
    • Derdeyn, C.A.1    Decker, J.M.2    Bibollet-Ruche, F.3
  • 49
    • 7644239787 scopus 로고    scopus 로고
    • Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope
    • Dacheux L, Moreau A, Ataman-Onal Y, Biron F, Verrier B, Barin F. Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope. J Virol 2004; 78:12625-37.
    • (2004) J Virol , vol.78 , pp. 12625-12637
    • Dacheux, L.1    Moreau, A.2    Ataman-Onal, Y.3    Biron, F.4    Verrier, B.5    Barin, F.6
  • 50
    • 33646453478 scopus 로고    scopus 로고
    • Neutralizing antibodies do not mediate suppression of human immunodeficiency virus type 1 in elite suppressors or selection of plasma virus variants in patients on highly active antiretroviral therapy
    • Bailey JR, Lassen KG, Yang HC, et al. Neutralizing antibodies do not mediate suppression of human immunodeficiency virus type 1 in elite suppressors or selection of plasma virus variants in patients on highly active antiretroviral therapy. J Virol 2006; 80:4758-70.
    • (2006) J Virol , vol.80 , pp. 4758-4770
    • Bailey, J.R.1    Lassen, K.G.2    Yang, H.C.3


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