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Volumn 73, Issue 5, 1999, Pages 3764-3777

Host-specific modulation of the selective constraints driving human immunodeficiency virus type 1 env gene evolution

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CELL SURVIVAL; DNA SEQUENCE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; IMMUNE RESPONSE; MOLECULAR CLONING; MOLECULAR EVOLUTION; MONONUCLEAR CELL; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TARGET CELL; VIRUS CELL INTERACTION; VIRUS ENVELOPE; VIRUS REPLICATION;

EID: 0032902701     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.73.5.3764-3777.1999     Document Type: Article
Times cited : (39)

References (56)
  • 3
    • 0026690657 scopus 로고
    • Fidelity of the reverse transcriptase of human immunodeficiency type 2
    • Bakhanashvili, M., and A. Hizi. 1992. Fidelity of the reverse transcriptase of human immunodeficiency type 2. FEBS Lett. 306:151-156.
    • (1992) FEBS Lett. , vol.306 , pp. 151-156
    • Bakhanashvili, M.1    Hizi, A.2
  • 4
    • 0027535828 scopus 로고
    • The fidelity of the reverse transcriptases of human immunodeficiency viruses and murine leukemia virus exhibited by the mispair extension frequencies is sequence dependent and enzyme related
    • Bakhanashvili, M., and A. Hizi. 1993. The fidelity of the reverse transcriptases of human immunodeficiency viruses and murine leukemia virus exhibited by the mispair extension frequencies is sequence dependent and enzyme related. FEBS Lett. 319:201-205.
    • (1993) FEBS Lett. , vol.319 , pp. 201-205
    • Bakhanashvili, M.1    Hizi, A.2
  • 5
    • 0027215750 scopus 로고
    • Error-prone polymerization by HIV-1 reverse transcriptase. Contribution of template-primer misalignment miscoding and termination probability to mutational hot spots
    • Bebenek, K., J. Abbotts, S. H. Wilson, and T. A. Kunkel. 1993. Error-prone polymerization by HIV-1 reverse transcriptase. Contribution of template-primer misalignment miscoding and termination probability to mutational hot spots. J. Biol. Chem. 268:10324-10334.
    • (1993) J. Biol. Chem. , vol.268 , pp. 10324-10334
    • Bebenek, K.1    Abbotts, J.2    Wilson, S.H.3    Kunkel, T.A.4
  • 7
    • 0030885594 scopus 로고    scopus 로고
    • A vaccine for HIV type 1: The antibody perspective
    • Burton, D. R. 1997. A vaccine for HIV type 1: the antibody perspective. Proc. Natl. Acad. Sci. USA 94:10018-10023.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10018-10023
    • Burton, D.R.1
  • 8
    • 0027980442 scopus 로고
    • Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heleroduplex mobility assays
    • Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heleroduplex mobility assays. J. Virol. 68:6672-6683.
    • (1994) J. Virol. , vol.68 , pp. 6672-6683
    • Delwart, E.L.1    Sheppard, H.W.2    Walker, B.D.3    Goudsmit, J.4    Mullins, J.I.5
  • 9
    • 0023801320 scopus 로고
    • Determination of the rate of base-pair substitution and insertion mutations in retrovirus replication
    • Dougherty, J. P., and H. M. Temin. 1988. Determination of the rate of base-pair substitution and insertion mutations in retrovirus replication. J. Virol. 62:2817-2822.
    • (1988) J. Virol. , vol.62 , pp. 2817-2822
    • Dougherty, J.P.1    Temin, H.M.2
  • 10
    • 0027380678 scopus 로고
    • Fidelity of DNA synthesis catalyzed by human DNA polymerase alpha and HIV-1 reverse transcriptase: Effect of reaction pH
    • Eckert, K. A., and T. A. Kunkel. 1993. Fidelity of DNA synthesis catalyzed by human DNA polymerase alpha and HIV-1 reverse transcriptase: effect of reaction pH. Nucleic Acids Res. 21:5212-5220.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5212-5220
    • Eckert, K.A.1    Kunkel, T.A.2
  • 11
    • 0026027515 scopus 로고
    • HIV-1 V3 domain variation in brain and spleen of children with AIDS: Tissue-specific evolution within host-determined quasispecies
    • Epstein, L. G., C. Kuiken, B. M. Blumberg, S. Hartman, L. R. Sharer, M. Clement, and J. Goudsmit. 1991. HIV-1 V3 domain variation in brain and spleen of children with AIDS: tissue-specific evolution within host-determined quasispecies. Virology 180:583-590.
    • (1991) Virology , vol.180 , pp. 583-590
    • Epstein, L.G.1    Kuiken, C.2    Blumberg, B.M.3    Hartman, S.4    Sharer, L.R.5    Clement, M.6    Goudsmit, J.7
  • 13
    • 0026606727 scopus 로고
    • Phenotype associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
    • Fouchier, R. A. M., M. Groenik, N. A. Kuostra, M. Tersmette, H. G. Huisman, F. Miedema, and H. Schuitemaker. 1992. Phenotype associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J. Virol. 66:3183-3187.
    • (1992) J. Virol. , vol.66 , pp. 3183-3187
    • Fouchier, R.A.M.1    Groenik, M.2    Kuostra, N.A.3    Tersmette, M.4    Huisman, H.G.5    Miedema, F.6    Schuitemaker, H.7
  • 14
    • 0031060165 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease
    • Ganeshan, S., R. E. Dickaver, B. T. Korber, Y. J. Bryson, and S. M. Wolinsky. 1997. Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease. J. Virol. 71:663-677.
    • (1997) J. Virol. , vol.71 , pp. 663-677
    • Ganeshan, S.1    Dickaver, R.E.2    Korber, B.T.3    Bryson, Y.J.4    Wolinsky, S.M.5
  • 15
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman, N., and Z. Yang. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-734.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-734
    • Goldman, N.1    Yang, Z.2
  • 16
    • 0024337928 scopus 로고
    • HIV-1 isolates are rapidly evolving quasispecies: Evidence for viral mixtures and preferred nucleotide substitution
    • Goodenow, M., T. Huet, W. Saurin, S. Kwok, J. Sninsky, and S. Wain-Hobson. 1989. HIV-1 isolates are rapidly evolving quasispecies: evidence for viral mixtures and preferred nucleotide substitution. J. Acquired Immune Defic. Syndr. 2:344-352.
    • (1989) J. Acquired Immune Defic. Syndr. , vol.2 , pp. 344-352
    • Goodenow, M.1    Huet, T.2    Saurin, W.3    Kwok, S.4    Sninsky, J.5    Wain-Hobson, S.6
  • 18
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
    • Ho, D. D., A. U. Neuman, A. S. Perelson, W. Chen, J. M. Leonard, and M. Markowitz. 1995. Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373:123-126.
    • (1995) Nature , vol.373 , pp. 123-126
    • Ho, D.D.1    Neuman, A.U.2    Perelson, A.S.3    Chen, W.4    Leonard, J.M.5    Markowitz, M.6
  • 19
  • 20
    • 0026647419 scopus 로고
    • Convergent and divergent sequence evolution in the surface glycoprotein of human immunodeficiency virus type 1 within a single infected patient
    • Holmes, E. C., L. Q. Zhang, P. Simmonds, C. A. Ludlam, and A. J. Leigh-Brown. 1992. Convergent and divergent sequence evolution in the surface glycoprotein of human immunodeficiency virus type 1 within a single infected patient. Proc. Natl. Acad. Sci. USA 89:4835-4839.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 4835-4839
    • Holmes, E.C.1    Zhang, L.Q.2    Simmonds, P.3    Ludlam, C.A.4    Leigh-Brown, A.J.5
  • 21
    • 0025095253 scopus 로고
    • Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and a high rate of genetic recombination
    • Hu, W. S., and H. M. Temin. 1990. Genetic consequences of packaging two RNA genomes in one retroviral particle: pseudodiploidy and a high rate of genetic recombination. Proc. Natl. Acad. Sci. USA 87:1556-1560.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 22
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
    • Huges, A. L., and M. Nei. 1988. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170.
    • (1988) Nature , vol.335 , pp. 167-170
    • Huges, A.L.1    Nei, M.2
  • 23
    • 0032574895 scopus 로고    scopus 로고
    • Characterization of the viral population during primary HIV-1 infection
    • Karlsson. A. C., S. Lindbäck, H. Gaines, and A. Sonnerborg. 1998. Characterization of the viral population during primary HIV-1 infection. AIDS 8: 839-847.
    • (1998) AIDS , vol.8 , pp. 839-847
    • Karlsson A, C.1    Lindbäck, S.2    Gaines, H.3    Sonnerborg, A.4
  • 24
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 26
    • 0032546809 scopus 로고    scopus 로고
    • Limitations of a molecular clock applied to considerations of the origin of HIV-1
    • Korber, B., J. Theiler, and S. Wolinsky. 1998. Limitations of a molecular clock applied to considerations of the origin of HIV-1. Science 280:1868-1871.
    • (1998) Science , vol.280 , pp. 1868-1871
    • Korber, B.1    Theiler, J.2    Wolinsky, S.3
  • 27
    • 0032543307 scopus 로고    scopus 로고
    • Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
    • Kwong, P. D., R. Wyatt, J. Robinson, R. W. Sweet, J. Sodroski, and W. A. Hendrickson. 1998. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody. Nature 393:648-659.
    • (1998) Nature , vol.393 , pp. 648-659
    • Kwong, P.D.1    Wyatt, R.2    Robinson, J.3    Sweet, R.W.4    Sodroski, J.5    Hendrickson, W.A.6
  • 28
    • 0028906291 scopus 로고
    • New methods for estimating the numbers of synonymous and nonsynonymous substitutions
    • Ina, Y. 1985. New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 40:190-226.
    • (1985) J. Mol. Evol. , vol.40 , pp. 190-226
    • Ina, Y.1
  • 29
    • 0025292252 scopus 로고
    • Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells
    • Leonard, C. K., M. W. Spellman, L. Riddle, R. J. Harris, J. N. Thomas, and T. J. Gregory. 1990. Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells. J. Biol. Chem. 265:10373-10382.
    • (1990) J. Biol. Chem. , vol.265 , pp. 10373-10382
    • Leonard, C.K.1    Spellman, M.W.2    Riddle, L.3    Harris, R.J.4    Thomas, J.N.5    Gregory, T.J.6
  • 30
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes
    • Li, W.-H., C.-I. Wu, and C. C. Luo. 1985. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitutions considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:150-174.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 150-174
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.C.3
  • 31
    • 0028826072 scopus 로고
    • Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period
    • Lukashov, V. V., C. L. Kuiken, and J. Goudsmit. 1995. Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period. J. Virol. 69:6911-6916.
    • (1995) J. Virol. , vol.69 , pp. 6911-6916
    • Lukashov, V.V.1    Kuiken, C.L.2    Goudsmit, J.3
  • 32
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky, L. M., and H. M. Temin. 1995. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69:5087-5094.
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 34
    • 0026683717 scopus 로고
    • Absolute quantitation of viremia in human immunodeficiency virus infection by competitive reverse transcription and polymerase chain reaction
    • Menzo, S., P. Bagnarelli, M. Giacca, A. Manzin, P. E. Varaldo, and M. Clementi. 1992. Absolute quantitation of viremia in human immunodeficiency virus infection by competitive reverse transcription and polymerase chain reaction. J. Clin. Microbiol. 30:1752-1757.
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 1752-1757
    • Menzo, S.1    Bagnarelli, P.2    Giacca, M.3    Manzin, A.4    Varaldo, P.E.5    Clementi, M.6
  • 37
    • 0027221071 scopus 로고
    • V3 loop of the human immunodeficiency virus type 1 Env protein: Interpreting sequence variability
    • Milich, L., B. Margolin, and R. Swanstrom. 1993. V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability. J. Virol. 67:5623-5634.
    • (1993) J. Virol. , vol.67 , pp. 5623-5634
    • Milich, L.1    Margolin, B.2    Swanstrom, R.3
  • 38
    • 0029995194 scopus 로고    scopus 로고
    • Positive selection and rates of evolution in immunodeficiency viruses from humans and chimpanzees
    • Mindell, D. P. 1996. Positive selection and rates of evolution in immunodeficiency viruses from humans and chimpanzees. Proc. Natl. Acad. Sci. USA 93:3284-3288.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 3284-3288
    • Mindell, D.P.1
  • 39
    • 0022507362 scopus 로고
    • Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori. 1986. Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 40
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen, R., and Z. Yang. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 42
    • 0029985351 scopus 로고    scopus 로고
    • Population dynamics of immune responses to persistent viruses
    • Nowak, M. A., and C. R. Bangham. 1996. Population dynamics of immune responses to persistent viruses. Science 272:74-79.
    • (1996) Science , vol.272 , pp. 74-79
    • Nowak, M.A.1    Bangham, C.R.2
  • 43
    • 0025030676 scopus 로고
    • Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: Substitutions, frameshifts, and hyper-mutations
    • Pathak, V. K., and H.-M. Temin. 1990. Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: substitutions, frameshifts, and hyper-mutations. Proc. Natl. Acad. Sci. USA 87:6019-6023.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 6019-6023
    • Pathak, V.K.1    Temin, H.-M.2
  • 44
    • 0024992893 scopus 로고
    • Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: Deletions and deletions with insertions
    • Pathak, V. K., and H.-M. Temin. 1990. Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: deletions and deletions with insertions. Proc. Natl. Acad. Sci. USA 87:6024-6028.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 6024-6028
    • Pathak, V.K.1    Temin, H.-M.2
  • 45
    • 0032554603 scopus 로고    scopus 로고
    • Virus dynamics: The effect of target cell limitation and immune responses on virus evolution
    • Regoes, R. R, D. Wodarz, and M. A. Nowak. 1998. Virus dynamics: the effect of target cell limitation and immune responses on virus evolution. J. Theor. Biol. 191:451-462.
    • (1998) J. Theor. Biol. , vol.191 , pp. 451-462
    • Regoes, R.R.1    Wodarz, D.2    Nowak, M.A.3
  • 46
    • 0031749469 scopus 로고    scopus 로고
    • A role of carbohydrates in immune evasion in AIDS
    • Reitter, J. N., R. E. Means, and R. C. Desrosiers, 1998. A role of carbohydrates in immune evasion in AIDS. Nat. Med. 4:679-684.
    • (1998) Nat. Med. , vol.4 , pp. 679-684
    • Reitter, J.N.1    Means, R.E.2    Desrosiers, R.C.3
  • 48
    • 0027180278 scopus 로고
    • Retrovirus variation and reverse transcription: Abnormal strand transfers result in retrovirus genetic variation
    • Temin, H.-M. 1993. Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation. Proc. Natl. Acad. Sci. USA 90:6900-6803.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 6900-16803
    • Temin, H.-M.1
  • 49
    • 0344368310 scopus 로고    scopus 로고
    • Theoretical Biology and Biophysics Group/Los Alamos National Laboratory, Los Alamos, N. Mex.
    • Theoretical Biology and Biophysics Group. 1997. The human retroviruses and AIDS compendium (1997 version). Theoretical Biology and Biophysics Group/Los Alamos National Laboratory, Los Alamos, N. Mex.
    • (1997) The Human Retroviruses and AIDS Compendium (1997 Version)
  • 52
    • 0032546844 scopus 로고    scopus 로고
    • The HIV-1 envelope glycoproteins: Fusogens, antigens, and immunogens
    • Wyatt, R., and J. Sodroski. 1998. The HIV-1 envelope glycoproteins: fusogens, antigens, and immunogens. Science 280:1884-1888.
    • (1998) Science , vol.280 , pp. 1884-1888
    • Wyatt, R.1    Sodroski, J.2
  • 53
    • 0031029083 scopus 로고    scopus 로고
    • Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts
    • Yamaguchi, Y., and T. Gojobori. 1997. Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts. Proc. Natl. Acad. Sci. USA 94:1264-1269.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1264-1269
    • Yamaguchi, Y.1    Gojobori, T.2
  • 54
    • 0026760911 scopus 로고
    • Comparison of HIV-1 and avian myeloblastosis virus reverse transcriptase fidelity on RNA and DNA templates
    • Yu, H., and M. F. Goodman. 1992. Comparison of HIV-1 and avian myeloblastosis virus reverse transcriptase fidelity on RNA and DNA templates. J. Biol. Chem. 267:10888-10896.
    • (1992) J. Biol. Chem. , vol.267 , pp. 10888-10896
    • Yu, H.1    Goodman, M.F.2
  • 55
    • 0031041894 scopus 로고    scopus 로고
    • Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo
    • Zhang, L., R. S. Diaz, D. D. Ho, J. W. Mosley, M. P. Bush, and A. Mayer. 1997. Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo. J. Virol. 71:2555-2561.
    • (1997) J. Virol. , vol.71 , pp. 2555-2561
    • Zhang, L.1    Diaz, R.S.2    Ho, D.D.3    Mosley, J.W.4    Bush, M.P.5    Mayer, A.6
  • 56
    • 0027422278 scopus 로고
    • Genotypic and phenotypic characterization of HIV-1 in patients with primary infection
    • Zhu, T., H. Mo, N. Wang, D. S. Nam, Y. Cao, R. A. Koup, and D. D. Ho. 1993. Genotypic and phenotypic characterization of HIV-1 in patients with primary infection. Science 261:1179-1181.
    • (1993) Science , vol.261 , pp. 1179-1181
    • Zhu, T.1    Mo, H.2    Wang, N.3    Nam, D.S.4    Cao, Y.5    Koup, R.A.6    Ho, D.D.7


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