메뉴 건너뛰기




Volumn 20, Issue 2, 2007, Pages 283-294

Application of recent DNA/RNA-based techniques in rumen ecology

Author keywords

Ecology; Functional analysis; Microbial; Molecular; Ribosomal; Rumen

Indexed keywords

ANIMALIA; ARCHAEA; BACTERIA (MICROORGANISMS); FUNGI; PROTOZOA;

EID: 33847149682     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2007.283     Document Type: Article
Times cited : (38)

References (101)
  • 2
    • 0035989425 scopus 로고    scopus 로고
    • Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs
    • Bonnet, R., A. Suau, J. Dore, G. R. Gibson and M. D. Collins. 2002. Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. Int. J. Syst. Evol. Microbiol. 52:757-763.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 757-763
    • Bonnet, R.1    Suau, A.2    Dore, J.3    Gibson, G.R.4    Collins, M.D.5
  • 3
    • 0026590102 scopus 로고
    • Molecular evolution of the fungi: Relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes
    • Bowman, B. H., J. W. Taylor, A. G. Brownlee, J. Lee, S. D. Lu, and T. J. White. 1992. Molecular evolution of the fungi: relationship of the Basidiomycetes, Ascomycetes, and Chytridiomycetes. Mol. Biol. Evol. 9:285-296.
    • (1992) Mol. Biol. Evol , vol.9 , pp. 285-296
    • Bowman, B.H.1    Taylor, J.W.2    Brownlee, A.G.3    Lee, J.4    Lu, S.D.5    White, T.J.6
  • 4
    • 0026467696 scopus 로고
    • Use of DNA probes to monitor nutritional effects on ruminal prokaryotes and Fibrobacter succinogenes S85
    • Briesacher, S. L., T. May, K. N. Grigsby, M. S. Kerley, R. V. Anthony and J. A. Paterson. 1992. Use of DNA probes to monitor nutritional effects on ruminal prokaryotes and Fibrobacter succinogenes S85. J. Anim. Sci. 70:289-295.
    • (1992) J. Anim. Sci , vol.70 , pp. 289-295
    • Briesacher, S.L.1    May, T.2    Grigsby, K.N.3    Kerley, M.S.4    Anthony, R.V.5    Paterson, J.A.6
  • 5
    • 0033981963 scopus 로고    scopus 로고
    • Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 18S rRNA
    • Brookman, J. L., G. Mennim, A. P. Trinci, M. K. Theodorou and D. S. Tuckwell. 2000. Identification and characterization of anaerobic gut fungi using molecular methodologies based on ribosomal ITS1 and 18S rRNA. Microbiol. 146:393-403.
    • (2000) Microbiol , vol.146 , pp. 393-403
    • Brookman, J.L.1    Mennim, G.2    Trinci, A.P.3    Theodorou, M.K.4    Tuckwell, D.S.5
  • 6
    • 0942305602 scopus 로고    scopus 로고
    • Nottingham, UK, Nottingham University Press
    • Dehority, B. A. 2003. Rumen Microbiology. Nottingham, UK., Nottingham University Press.
    • (2003) Rumen Microbiology
    • Dehority, B.A.1
  • 8
    • 33847139305 scopus 로고    scopus 로고
    • Denman, S. E. and C. S. McSweeney, 2005. PCR-based methods for analysis of populations and gene expression. 3.2 quantitative (Real time) PCR. In 'Methods in Gut Microbial Ecology for Ruminants'. (Ed. H. Makkar and C. S. McSweeney), Springer, The Netherlands.
    • Denman, S. E. and C. S. McSweeney, 2005. PCR-based methods for analysis of populations and gene expression. 3.2 quantitative (Real time) PCR. In 'Methods in Gut Microbial Ecology for Ruminants'. (Ed. H. Makkar and C. S. McSweeney), Springer, The Netherlands.
  • 9
    • 33751016342 scopus 로고    scopus 로고
    • The use of quantitative PCR for monitoring diurnal fluxes of anaerobic fungal and bacterial populations within the rumen
    • in press
    • Denman, S. E. and C. S. McSweeney. 2006. The use of quantitative PCR for monitoring diurnal fluxes of anaerobic fungal and bacterial populations within the rumen. FEMS Microb. Ecol. (in press).
    • (2006) FEMS Microb. Ecol
    • Denman, S.E.1    McSweeney, C.S.2
  • 10
    • 33847093660 scopus 로고    scopus 로고
    • Monitoring the effect of bromochloromethane on methanogen populations within the rumen using qPCR
    • Ed. C. R. Soliva, J. Takahashi and M. Kreuzer, ETH Zurich, Switzerland, p
    • Denman, S. E., N. Tomkins and C. S. McSweeney. 2005. Monitoring the effect of bromochloromethane on methanogen populations within the rumen using qPCR. In '2nd International Symposium on Greenhouse Gases and Animal Agriculture' (Ed. C. R. Soliva, J. Takahashi and M. Kreuzer). ETH Zurich, Switzerland, p. 112.
    • (2005) 2nd International Symposium on Greenhouse Gases and Animal Agriculture , pp. 112
    • Denman, S.E.1    Tomkins, N.2    McSweeney, C.S.3
  • 11
    • 0037315779 scopus 로고    scopus 로고
    • Monitoring gene expression in mixed microbial communities by using DNA microarrays
    • Dennis, P., E. A. Edwards, S. N. Liss and R. Fulthorpe. 2003. Monitoring gene expression in mixed microbial communities by using DNA microarrays. Appl. Environ. Microbiol. 69:769-778.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 769-778
    • Dennis, P.1    Edwards, E.A.2    Liss, S.N.3    Fulthorpe, R.4
  • 12
    • 0038165054 scopus 로고
    • Ribosomal DNA-targeted hybridisation probes for the detection, identification and quantitation of anaerobic rumen fungi
    • Dore, J., A. G. Brownlee, L. Millet, I. Virlogeux, M. Saigne, G. Fonty and P. Gouet. 1993. Ribosomal DNA-targeted hybridisation probes for the detection, identification and quantitation of anaerobic rumen fungi. Proc. Nutr. Soc. 52:176A.
    • (1993) Proc. Nutr. Soc , vol.52
    • Dore, J.1    Brownlee, A.G.2    Millet, L.3    Virlogeux, I.4    Saigne, M.5    Fonty, G.6    Gouet, P.7
  • 13
    • 0001133545 scopus 로고    scopus 로고
    • Effect of concentrates in a hay diet on the contribution of anaerobic fungi, protozoa, and bacteria to nitrogen in rumen and duodenal digesta in sheep
    • Faichney, G J., C. Poncet, B. Lassalas, J. P. Jouany, L. Millet, J. Doré and A. G. Brownlee. 1997. Effect of concentrates in a hay diet on the contribution of anaerobic fungi, protozoa, and bacteria to nitrogen in rumen and duodenal digesta in sheep. Anim. Feed Sci. Technol. 64:193-213.
    • (1997) Anim. Feed Sci. Technol , vol.64 , pp. 193-213
    • Faichney, G.J.1    Poncet, C.2    Lassalas, B.3    Jouany, J.P.4    Millet, L.5    Doré, J.6    Brownlee, A.G.7
  • 15
    • 33847138447 scopus 로고    scopus 로고
    • Characterisation and quantification of the microbial populations of the rumen
    • Ed. K. Sejrsen, T. Hvelplund and M. O. Nielsen, pp, Wageningen Academic Publisher, The Netherlands
    • Firkins, J. L. and Z. Yu. 2006. Characterisation and quantification of the microbial populations of the rumen. Ruminant physiology: Digestion, metabolism and impact of nutrition on gene expression, immunology and stress (Ed. K. Sejrsen, T. Hvelplund and M. O. Nielsen). pp. 19-54. Wageningen Academic Publisher, The Netherlands.
    • (2006) Ruminant physiology: Digestion, metabolism and impact of nutrition on gene expression, immunology and stress , pp. 19-54
    • Firkins, J.L.1    Yu, Z.2
  • 16
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher, M. M. and E. W. Triplett. 1999. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl. Environ. Microbiol. 65:4630-4636.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 17
    • 0030898396 scopus 로고    scopus 로고
    • Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen
    • Forster, R., J. Gong and R. J. Teather. 1997. Group-specific 16S rRNA hybridization probes for determinative and community structure studies of Butyrivibrio fibrisolvens in the rumen. Appl. Environ. Microbiol. 63:1256-1260.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1256-1260
    • Forster, R.1    Gong, J.2    Teather, R.J.3
  • 18
    • 0032894224 scopus 로고    scopus 로고
    • Quantitative RT-PCR: Pitfalls and potential
    • Freeman, W. M., S. J. Walker and K. E. Vrana. 1999. Quantitative RT-PCR: pitfalls and potential. Biotech. 26:112-125.
    • (1999) Biotech , vol.26 , pp. 112-125
    • Freeman, W.M.1    Walker, S.J.2    Vrana, K.E.3
  • 19
    • 0036890052 scopus 로고    scopus 로고
    • Depth related diversity of methanogen Archaea in Finnish oligotrophic fen
    • Galand, P. E., S. Saarnio, H. Fritze and K. Yrjala. 2002. Depth related diversity of methanogen Archaea in Finnish oligotrophic fen. FEMS Microbiol. Ecol. 42:441-449.
    • (2002) FEMS Microbiol. Ecol , vol.42 , pp. 441-449
    • Galand, P.E.1    Saarnio, S.2    Fritze, H.3    Yrjala, K.4
  • 20
    • 0035215477 scopus 로고    scopus 로고
    • Linking genetic identity and function in communities of uncultured bacteria
    • Gray, N. D. and I. M. Head. 2001. Linking genetic identity and function in communities of uncultured bacteria. Environ. Microbiol. 3:481-492.
    • (2001) Environ. Microbiol , vol.3 , pp. 481-492
    • Gray, N.D.1    Head, I.M.2
  • 21
    • 0141592799 scopus 로고    scopus 로고
    • Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea
    • Hallam, S. J., P. R. Girguis, C. M. Preston, P. M. Richardson and E. F. DeLong. 2003. Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Appl. Environ. Microbiol. 69:5483-5491.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 5483-5491
    • Hallam, S.J.1    Girguis, P.R.2    Preston, C.M.3    Richardson, P.M.4    DeLong, E.F.5
  • 22
    • 0002094193 scopus 로고    scopus 로고
    • Bacteria, fungi, and protozoa of the rumen
    • Ed. R. I. Mackie, B. A. White and R. E. Isaacson, pp, Chapman and Hall, New York
    • Hespell, R. B., D. E. Akin and B. A. Dehority. 1997. Bacteria, fungi, and protozoa of the rumen. In: Gastrointestinal Microbiology, vol. 2, (Ed. R. I. Mackie, B. A. White and R. E. Isaacson). pp. 59-141. Chapman and Hall, New York.
    • (1997) Gastrointestinal Microbiology , vol.2 , pp. 59-141
    • Hespell, R.B.1    Akin, D.E.2    Dehority, B.A.3
  • 23
    • 0029115109 scopus 로고
    • Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens
    • Hiraishi, A., Y. Kamagata and K. Nakamura. 1995. Polymerase chain reaction amplification and restriction fragment length polymorphism analysis of 16S rRNA genes from methanogens. J. Ferment. Bioeng. 79:523-529.
    • (1995) J. Ferment. Bioeng , vol.79 , pp. 523-529
    • Hiraishi, A.1    Kamagata, Y.2    Nakamura, K.3
  • 24
    • 11044237974 scopus 로고    scopus 로고
    • Detection of methanogens and proteobacteria from a single cell of rumen ci,liate protozoa
    • Irbis, C. and K. Ushida. 2004. Detection of methanogens and proteobacteria from a single cell of rumen ci,liate protozoa. J. Gen. Appl. Microbiol. 50:203-212.
    • (2004) J. Gen. Appl. Microbiol , vol.50 , pp. 203-212
    • Irbis, C.1    Ushida, K.2
  • 25
    • 0029926357 scopus 로고    scopus 로고
    • Effect of rumen protozoa on nitrogen utilization by ruminants
    • Jouany, J. P. 1996. Effect of rumen protozoa on nitrogen utilization by ruminants. J. Nutr. 126:13358-468.
    • (1996) J. Nutr , vol.126 , pp. 13358-13468
    • Jouany, J.P.1
  • 26
    • 0038608039 scopus 로고    scopus 로고
    • Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminai samples of cows
    • Karnati, S. K., Z. Yu, J. T. Sylvester, B. A. Dehority, M. Morrison and J. L. Firkins. 2003. Specific PCR amplification of protozoal 18S rDNA sequences from DNA extracted from ruminai samples of cows. J. Anim. Sci. 81:812-815.
    • (2003) J. Anim. Sci , vol.81 , pp. 812-815
    • Karnati, S.K.1    Yu, Z.2    Sylvester, J.T.3    Dehority, B.A.4    Morrison, M.5    Firkins, J.L.6
  • 27
    • 0034567992 scopus 로고    scopus 로고
    • Methanogenesis in rumen ciliate cultures of Entodinium caudatum and Epidinium ecaudatum after long-term cultivation in a chemically defined medium
    • Kišidayová, S., Z. Varadyova, I. Zelenak and P. Siroka. 2000. Methanogenesis in rumen ciliate cultures of Entodinium caudatum and Epidinium ecaudatum after long-term cultivation in a chemically defined medium. Folia Microbiol. (Praha) 45:269-274.
    • (2000) Folia Microbiol. (Praha) , vol.45 , pp. 269-274
    • Kišidayová, S.1    Varadyova, Z.2    Zelenak, I.3    Siroka, P.4
  • 28
    • 0042882236 scopus 로고    scopus 로고
    • Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets
    • Klieve, A. V., D. Hennessy, D. Ouwerkerk, R. J. Forster, R. I. Mackie and G. T. Attwood. 2003. Establishing populations of Megasphaera elsdenii YE 34 and Butyrivibrio fibrisolvens YE 44 in the rumen of cattle fed high grain diets. J. Appl. Microbiol. 95:621-630.
    • (2003) J. Appl. Microbiol , vol.95 , pp. 621-630
    • Klieve, A.V.1    Hennessy, D.2    Ouwerkerk, D.3    Forster, R.J.4    Mackie, R.I.5    Attwood, G.T.6
  • 29
    • 0034803204 scopus 로고    scopus 로고
    • Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches
    • Kocherginskaya, S. A., R. I. Aminov and B. A. White. 2001. Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing, and statistical ecology approaches. Anaerobe 7:119-134.
    • (2001) Anaerobe , vol.7 , pp. 119-134
    • Kocherginskaya, S.A.1    Aminov, R.I.2    White, B.A.3
  • 30
    • 0035856590 scopus 로고    scopus 로고
    • Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens
    • Koike, S. and Y. Kobayashi. 2001. Development and use of competitive PCR assays for the rumen cellulolytic bacteria: Fibrobacter succinogenes, Ruminococcus albus and Ruminococcus flavefaciens. FEMS Microbiol. Lett. 204:361-366.
    • (2001) FEMS Microbiol. Lett , vol.204 , pp. 361-366
    • Koike, S.1    Kobayashi, Y.2
  • 31
    • 0038749347 scopus 로고    scopus 로고
    • Kinetics of in sacco fiber-attachment of representative ruminai cellulolytic bacteria monitored by competitive PCR
    • Koike, S., J. Pan, Y. Kobayashi and K. Tanaka. 2003a. Kinetics of in sacco fiber-attachment of representative ruminai cellulolytic bacteria monitored by competitive PCR. J. Dairy. Sci. 86:1429-1435.
    • (2003) J. Dairy. Sci , vol.86 , pp. 1429-1435
    • Koike, S.1    Pan, J.2    Kobayashi, Y.3    Tanaka, K.4
  • 32
    • 0344307653 scopus 로고    scopus 로고
    • Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria
    • Koike, S., S. Yoshitanib, Y. Kobayashi and K. Tanaka. 2003b. Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria. FEMS Microbiol. Lett. 229:23-30.
    • (2003) FEMS Microbiol. Lett , vol.229 , pp. 23-30
    • Koike, S.1    Yoshitanib, S.2    Kobayashi, Y.3    Tanaka, K.4
  • 33
    • 0032805304 scopus 로고    scopus 로고
    • 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: Design of a signature probe and its application in adult sheep
    • Krause, D. O., B. P. Dalrymple, W. J. Smith, R. I. Mackie and C. S. McSweeney. 1999a. 16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep. Microbiol. 145:1797-1807.
    • (1999) Microbiol , vol.145 , pp. 1797-1807
    • Krause, D.O.1    Dalrymple, B.P.2    Smith, W.J.3    Mackie, R.I.4    McSweeney, C.S.5
  • 34
    • 0343238378 scopus 로고    scopus 로고
    • Use of 16S-rRNA based techniques to investigate the ecological succession of microbial populations in the immature lamb rumen: Tracking of a specific strain of inoculated Ruminococcus and interactions with other microbial populations in vivo
    • Krause, D. O., W. J. M. Smith, F. M. E. Ryan, R. I. Mackie and C. S. McSweeney. 1999b. Use of 16S-rRNA based techniques to investigate the ecological succession of microbial populations in the immature lamb rumen: Tracking of a specific strain of inoculated Ruminococcus and interactions with other microbial populations in vivo. Microb. Ecol. 38:365-376.
    • (1999) Microb. Ecol , vol.38 , pp. 365-376
    • Krause, D.O.1    Smith, W.J.M.2    Ryan, F.M.E.3    Mackie, R.I.4    McSweeney, C.S.5
  • 35
    • 0034880216 scopus 로고    scopus 로고
    • Extraction of microbial DNA from rumen contents containing plant tannins
    • Krause, D. O., W. J. Smith and C. S. McSweeney. 2001. Extraction of microbial DNA from rumen contents containing plant tannins. Bio. Techn. 31:294-298.
    • (2001) Bio. Techn , vol.31 , pp. 294-298
    • Krause, D.O.1    Smith, W.J.2    McSweeney, C.S.3
  • 36
  • 37
    • 15944371548 scopus 로고    scopus 로고
    • Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing
    • Larue, R., Z. Yu, V. A. Parisi, A. R. Egan and M. Morrison. 2004. Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ. Microbiol. 7:530-543.
    • (2004) Environ. Microbiol , vol.7 , pp. 530-543
    • Larue, R.1    Yu, Z.2    Parisi, V.A.3    Egan, A.R.4    Morrison, M.5
  • 38
    • 0033831649 scopus 로고    scopus 로고
    • Relative contributions of bacteria, protozoa, and fungi to in vitro degradation of orchard grass cell walls and their
    • Lee, S. S., J. K. Ha and K.-J. Cheng. 2000. Relative contributions of bacteria, protozoa, and fungi to in vitro degradation of orchard grass cell walls and their Interactions. Appl. Environ. Microbiol. 66:3807-3813.
    • (2000) Interactions. Appl. Environ. Microbiol , vol.66 , pp. 3807-3813
    • Lee, S.S.1    Ha, J.K.2    Cheng, K.-J.3
  • 39
    • 8144231103 scopus 로고    scopus 로고
    • Stable-isotope probing of microorganisms thriving at thermodynamic limits: Syntrophic propionate oxidation in flooded soil
    • Lueders, T., B. Pommerenke and M. W. Friedrich. 2004. Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil. Appl. Environ. Microbiol. 70:5778-5786.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5778-5786
    • Lueders, T.1    Pommerenke, B.2    Friedrich, M.W.3
  • 40
    • 0000514578 scopus 로고
    • The phylogenetic-relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the chytridiomycota. 1. cladistic-analysis of ribosomalRNA sequences
    • Li, J. L. and I. B. Heath. 1992. The phylogenetic-relationships of the anaerobic chytridiomycetous gut fungi (Neocallimasticaceae) and the chytridiomycota. 1. cladistic-analysis of ribosomalRNA sequences. Can. J. Bot. 70:1738-1746.
    • (1992) Can. J. Bot , vol.70 , pp. 1738-1746
    • Li, J.L.1    Heath, I.B.2
  • 41
    • 0028556628 scopus 로고
    • Taxon specific hybridization probes for fiber-digesting bacteria suggest novel gut-associated Fibrobacter
    • Lin, C. Z., B. Flesher, W. C. Capman, R. I. Amann and D. A. Stahl. 1994. Taxon specific hybridization probes for fiber-digesting bacteria suggest novel gut-associated Fibrobacter. Syst. Appl. Microbiol. 17:418-424.
    • (1994) Syst. Appl. Microbiol , vol.17 , pp. 418-424
    • Lin, C.Z.1    Flesher, B.2    Capman, W.C.3    Amann, R.I.4    Stahl, D.A.5
  • 42
    • 0030860126 scopus 로고    scopus 로고
    • Microbial community structure in gastrointestinal tracts of domestic animals: Comparative analysis using rRNA-targeted oligonucleotide probes
    • Lin, C., L. Raskin and D. A. Stahl. 1997. Microbial community structure in gastrointestinal tracts of domestic animals: comparative analysis using rRNA-targeted oligonucleotide probes. FEMS Microbiol. Ecol. 22:281-294.
    • (1997) FEMS Microbiol. Ecol , vol.22 , pp. 281-294
    • Lin, C.1    Raskin, L.2    Stahl, D.A.3
  • 43
    • 0035206819 scopus 로고    scopus 로고
    • Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage
    • Lueders, T., K. J. Chin, R. Conrad and M. Friedrich. 2001. Molecular analyses of methyl-coenzyme M reductase alpha-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environ. Microbiol. 3:194-204.
    • (2001) Environ. Microbiol , vol.3 , pp. 194-204
    • Lueders, T.1    Chin, K.J.2    Conrad, R.3    Friedrich, M.4
  • 44
    • 0036856362 scopus 로고    scopus 로고
    • The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
    • Luton, P. E., J. M. Wayne, R. J. Sharp and P. W. Riley. 2002. The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiol. 148:3521-3530.
    • (2002) Microbiol , vol.148 , pp. 3521-3530
    • Luton, P.E.1    Wayne, J.M.2    Sharp, R.J.3    Riley, P.W.4
  • 45
    • 18244421111 scopus 로고    scopus 로고
    • Effect of coconut oil and defaunation treatment on methanogenesis in sheep
    • Machmuller, A., C. R. Soliva and M. Kreuzer. 2003. Effect of coconut oil and defaunation treatment on methanogenesis in sheep. Reprod. Nutr. Dev. 43:41-55.
    • (2003) Reprod. Nutr. Dev , vol.43 , pp. 41-55
    • Machmuller, A.1    Soliva, C.R.2    Kreuzer, M.3
  • 47
    • 0036452120 scopus 로고    scopus 로고
    • Technical considerations for RNA based stable isotope probing: An approach to associating microbial diversity with microbial community function
    • Manefield, M., A. S. Whiteley, N. Ostle, P. Ineson and M. J. Bailey. 2002. Technical considerations for RNA based stable isotope probing: an approach to associating microbial diversity with microbial community function. Rapid Commun. Mass Spectrom. 16:2179-2183.
    • (2002) Rapid Commun. Mass Spectrom , vol.16 , pp. 2179-2183
    • Manefield, M.1    Whiteley, A.S.2    Ostle, N.3    Ineson, P.4    Bailey, M.J.5
  • 48
    • 0034954361 scopus 로고    scopus 로고
    • Fibrolytic activities and cellulolytic bacterial community structure in the solid and liquid phases of rumen contents
    • Michalet-Doreau, B., I. Fernandez, C. Peyron, L. Millet and G. Fonty. 2001. Fibrolytic activities and cellulolytic bacterial community structure in the solid and liquid phases of rumen contents. Reprod. Nutr. Dev. 41:187-194.
    • (2001) Reprod. Nutr. Dev , vol.41 , pp. 187-194
    • Michalet-Doreau, B.1    Fernandez, I.2    Peyron, C.3    Millet, L.4    Fonty, G.5
  • 49
    • 0000773048 scopus 로고
    • Methanogens in human and animal digestive tracts
    • Miller, T. L. and M. J. Wolin. 1986. Methanogens in human and animal digestive tracts. Syst. Appl. Microbiol. 7:223-229.
    • (1986) Syst. Appl. Microbiol , vol.7 , pp. 223-229
    • Miller, T.L.1    Wolin, M.J.2
  • 50
    • 0032971335 scopus 로고    scopus 로고
    • Phylogenetic analysis of peat bog methanogen populations
    • Nercessian, D., M. Upton, D. Loyd and C. Edwards. 1999. Phylogenetic analysis of peat bog methanogen populations. FEMS Microbiol. Lett. 173:425-429.
    • (1999) FEMS Microbiol. Lett , vol.173 , pp. 425-429
    • Nercessian, D.1    Upton, M.2    Loyd, D.3    Edwards, C.4
  • 51
    • 26844505264 scopus 로고    scopus 로고
    • SARST, Serial Analysis of Ribosomal Sequence Tags
    • 2nd Edition, Ed. G. A. Kowalchuk, F. J. de Bruijin, I. M. Head, A. D. L. Akkermans, J. D. van Elsaa, Kluwer Academic Publishers, The Netherlands
    • Neufeld, J. D., Z. Yu, W. Lam and W. W. Mohn. 2004a. SARST, Serial Analysis of Ribosomal Sequence Tags. pp. 543-568. In. 'Molecular Microbial Ecology Manual'. 2nd Edition. (Ed. G. A. Kowalchuk, F. J. de Bruijin, I. M. Head, A. D. L. Akkermans, J. D. van Elsaa), Kluwer Academic Publishers, The Netherlands.
    • (2004) Molecular Microbial Ecology Manual , pp. 543-568
    • Neufeld, J.D.1    Yu, Z.2    Lam, W.3    Mohn, W.W.4
  • 52
    • 1142306022 scopus 로고    scopus 로고
    • Serial analysis of ribosomal sequence tags (SARST): A high-throughput method for profiling complex microbial communities
    • Neufeld, J. D., Z. Yu, W. Lam and W. W. Mohn. 2004b. Serial analysis of ribosomal sequence tags (SARST): a high-throughput method for profiling complex microbial communities. Environ. Microbiol. 6:131-144.
    • (2004) Environ. Microbiol , vol.6 , pp. 131-144
    • Neufeld, J.D.1    Yu, Z.2    Lam, W.3    Mohn, W.W.4
  • 53
    • 33847133319 scopus 로고    scopus 로고
    • Understanding the molecular ecology of rumen fungi-A DDGE approach. In 'Beyond Antimicrobials- the Future of Gut Microbiology
    • Ed. R. J Wallace, Aberdeen
    • Nicholson, M. J., E. J. Kim, M. K. Theodorou and J. L. Brookman 2002. Understanding the molecular ecology of rumen fungi-A DDGE approach. In 'Beyond Antimicrobials- the Future of Gut Microbiology' (Ed. R. J Wallace). Proceedings of the 3rd RRI-INRA, Aberdeen.
    • (2002) Proceedings of the 3rd RRI-INRA
    • Nicholson, M.J.1    Kim, E.J.2    Theodorou, M.K.3    Brookman, J.L.4
  • 54
    • 0026677872 scopus 로고
    • A most probable number method for enumeration of rumen fungi with studies on factors affecting their concentration in the rumen
    • Obispo, N. E. and B. A. Dehority. 1992. A most probable number method for enumeration of rumen fungi with studies on factors affecting their concentration in the rumen. J. Microbiol. Methods. 16:259-270.
    • (1992) J. Microbiol. Methods , vol.16 , pp. 259-270
    • Obispo, N.E.1    Dehority, B.A.2
  • 55
    • 0016715558 scopus 로고
    • Studies on the rumen flagellate Neocallimastix frontalis
    • Orpin, C. G. 1975. Studies on the rumen flagellate Neocallimastix frontalis. J. Gen. Microbiol. 91:249-262.
    • (1975) J. Gen. Microbiol , vol.91 , pp. 249-262
    • Orpin, C.G.1
  • 56
    • 0000797292 scopus 로고
    • Anaerobic fungi: Taxonaomy, biology, and distribution in nature
    • Anaerobic Fungi: Biology, Ecology and Function, Ed. C. G. Orpin and D. O. Mountfort, Marcel Dekker, New York, pp
    • Orpin, C. G. 1994. Anaerobic fungi: taxonaomy, biology, and distribution in nature. In 'Anaerobic Fungi: Biology, Ecology and Function' (Ed. C. G. Orpin and D. O. Mountfort). Mycology series v. 12, Marcel Dekker, New York, pp. 1-45.
    • (1994) Mycology series , vol.12 , pp. 1-45
    • Orpin, C.G.1
  • 57
    • 0002848450 scopus 로고    scopus 로고
    • The rumen anaerobic fungi
    • 2nd edn, Ed. P. N. Hobson and C. S. Stewart, pp, Blackie, London
    • Orpin, C. G. and K. N. Joblin. 1997. The rumen anaerobic fungi. In 'The Rumen Microbial Ecosystem'. 2nd edn, (Ed. P. N. Hobson and C. S. Stewart), pp. 140-195. Blackie, London.
    • (1997) The Rumen Microbial Ecosystem , pp. 140-195
    • Orpin, C.G.1    Joblin, K.N.2
  • 58
    • 0036240224 scopus 로고    scopus 로고
    • Enumeration of Megasphaera elsdenii in rumen contents by real-time Taq nuclease assay
    • Ouwerkerk, D., A. V. Klieve and R. J. Forster. 2002. Enumeration of Megasphaera elsdenii in rumen contents by real-time Taq nuclease assay. J. Appl. Microbiol. 92:753-758.
    • (2002) J. Appl. Microbiol , vol.92 , pp. 753-758
    • Ouwerkerk, D.1    Klieve, A.V.2    Forster, R.J.3
  • 59
    • 0034871597 scopus 로고    scopus 로고
    • Cyllamyces aberensis gen. nov sp. nov., A new anaerobic gut fungus with branched sporangiophores isolated from cattle
    • Ozkose, E., B. J. Thomas, D. R. Davies, G. W. Griffith and M. K. Theodorou. 2001. Cyllamyces aberensis gen. nov sp. nov., A new anaerobic gut fungus with branched sporangiophores isolated from cattle. Can. J. Bot. 79:666-673.
    • (2001) Can. J. Bot , vol.79 , pp. 666-673
    • Ozkose, E.1    Thomas, B.J.2    Davies, D.R.3    Griffith, G.W.4    Theodorou, M.K.5
  • 60
    • 17844369762 scopus 로고    scopus 로고
    • The Effect of Protozoa on the Composition of Rumen Bacteria in Cattle Using 16S rRNA Gene Clone Libraries
    • Ozutsumi, Y., K. Tajima, A. Takenaka and H. Itabashi. 2005. The Effect of Protozoa on the Composition of Rumen Bacteria in Cattle Using 16S rRNA Gene Clone Libraries. Biosci. Biotechnol. Biochem. 69:499-506.
    • (2005) Biosci. Biotechnol. Biochem , vol.69 , pp. 499-506
    • Ozutsumi, Y.1    Tajima, K.2    Takenaka, A.3    Itabashi, H.4
  • 61
    • 0028231010 scopus 로고
    • The DNA of ciliated protozoa
    • Prescott, D. M. 1994. "The DNA of ciliated protozoa". Microbiol. Rev. 58(2):233-67.
    • (1994) Microbiol. Rev , vol.58 , Issue.2 , pp. 233-267
    • Prescott, D.M.1
  • 62
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • Radajewski, S., P. Ineson, N. R. Parekh and J. C. Murrell. 2000. Stable-isotope probing as a tool in microbial ecology. Nature 403:646-649.
    • (2000) Nature , vol.403 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 63
    • 33847109223 scopus 로고    scopus 로고
    • Stable isotope probing of nucleic acids to identify active microbial populations
    • 2 nd edn, pp, Kluwer Academic Publishers, Netherlands
    • Radajewski, S., I. R. McDonald and J. C. Murrell. 2004. Stable isotope probing of nucleic acids to identify active microbial populations. In 'Molecular Microbial Ecology Manual', 2 nd edn, pp. 1661-1672. Kluwer Academic Publishers, Netherlands.
    • (2004) Molecular Microbial Ecology Manual , pp. 1661-1672
    • Radajewski, S.1    McDonald, I.R.2    Murrell, J.C.3
  • 66
    • 0242417580 scopus 로고    scopus 로고
    • Impact of protozoan grazing on bacterial community structure in soil microcosms
    • Ronn, R., A. E McCaig, B. S. Griffiths and J. I. Presser. 2002. Impact of protozoan grazing on bacterial community structure in soil microcosms. Appl. Environ. Microbiol. 68:6094-6105.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 6094-6105
    • Ronn, R.1    McCaig, A.E.2    Griffiths, B.S.3    Presser, J.I.4
  • 67
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss, P. D., B. R. Larget and J. Handelsman. 2004. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl. Environ. Microbiol. 70:5485-5492.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 68
    • 0242624685 scopus 로고    scopus 로고
    • Effects of protozoa on methane production in rumen and hindgut of calves around time of weaning
    • Schonhusen, U., R. Zitnan, S. Kuhla, W. Jentsch, M. Derno and J. Voigt. 2003. Effects of protozoa on methane production in rumen and hindgut of calves around time of weaning. Arch. Tierernahr 57:279-295.
    • (2003) Arch. Tierernahr , vol.57 , pp. 279-295
    • Schonhusen, U.1    Zitnan, R.2    Kuhla, S.3    Jentsch, W.4    Derno, M.5    Voigt, J.6
  • 69
    • 0037224739 scopus 로고    scopus 로고
    • Extraction of PCR-quality plant and microbial DNA from total rumen contents
    • Sharma, R., S. J. John, D. M. Damgaard and T. A. McAllister. 2003. Extraction of PCR-quality plant and microbial DNA from total rumen contents. Biotechniq. 34:92-97.
    • (2003) Biotechniq , vol.34 , pp. 92-97
    • Sharma, R.1    John, S.J.2    Damgaard, D.M.3    McAllister, T.A.4
  • 71
    • 4544357886 scopus 로고    scopus 로고
    • 16S ribosomal DNA-directed PCR primers for ruminal methanogens and identification of methanogens colonising young lambs
    • Skillman, L. C., P. N. Evans, G. E. Naylor, B. Morvan, G. N. Jarvis and K. N. Joblin. 2004. 16S ribosomal DNA-directed PCR primers for ruminal methanogens and identification of methanogens colonising young lambs. Anaerobe 10:277-285.
    • (2004) Anaerobe , vol.10 , pp. 277-285
    • Skillman, L.C.1    Evans, P.N.2    Naylor, G.E.3    Morvan, B.4    Jarvis, G.N.5    Joblin, K.N.6
  • 72
    • 33644870885 scopus 로고    scopus 로고
    • Development and validation of a real-time PCR method to quantify rumen protozoa and examination of variability between protozoal populations in sheep fed a hay based diet
    • Skillman, L. C., A. F. Toovey, A. J. Williams and A.-D. G. Wright. 2006. Development and validation of a real-time PCR method to quantify rumen protozoa and examination of variability between protozoal populations in sheep fed a hay based diet. Appl. Environ. Microbiol. 72:200-206.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 200-206
    • Skillman, L.C.1    Toovey, A.F.2    Williams, A.J.3    Wright, A.-D.G.4
  • 73
    • 15244351941 scopus 로고    scopus 로고
    • Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis
    • Snell-Castro, R., J. J. Godon, J. P. Delgenes and P. Dabert. 2005. Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis. FEMS Microbiol. Ecol. 52:229-242.
    • (2005) FEMS Microbiol. Ecol , vol.52 , pp. 229-242
    • Snell-Castro, R.1    Godon, J.J.2    Delgenes, J.P.3    Dabert, P.4
  • 74
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies of ruminai microbial ecology
    • Stahl, D. A., B. Flesher, H. R. Mansfield and L. Montgomery. 1988. Use of phylogenetically based hybridization probes for studies of ruminai microbial ecology. Appl. Environ. Microbiol. 54:1079-1084.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 75
    • 0003185856 scopus 로고    scopus 로고
    • The rumen bacteria
    • 2nd ed, Ed. P. N. Hobson and C. S. Stewart, pp, Blackie Academic and Professionals, New York, NY
    • Stewart, C. S., H. J. Flint and M. P. Bryant. 1998. The rumen bacteria, In 'The Rumen Microbial Ecosystem', 2nd ed., (Ed. P. N. Hobson and C. S. Stewart). pp. 10-72. Blackie Academic and Professionals, New York, NY.
    • (1998) The Rumen Microbial Ecosystem , pp. 10-72
    • Stewart, C.S.1    Flint, H.J.2    Bryant, M.P.3
  • 76
    • 10044284420 scopus 로고    scopus 로고
    • Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR
    • Sylvester, J. T., S. K. R. Karnati, Z. Yu, M. Morrison and J. L. Firkins. 2004. Development of an assay to quantify rumen ciliate protozoal biomass in cows using real-time PCR. J. Nutrition. 134:3378-3384.
    • (2004) J. Nutrition , vol.134 , pp. 3378-3384
    • Sylvester, J.T.1    Karnati, S.K.R.2    Yu, Z.3    Morrison, M.4    Firkins, J.L.5
  • 77
    • 26444519840 scopus 로고    scopus 로고
    • Evaluation of a real-time PCR assay quantifying the ruminai pool size and duodenal flow of protozoal nitrogen
    • Sylvester, J. T., S. K. Karnati, Z. Yu, C. J. Newbold and J. L. Firkins. 2005. Evaluation of a real-time PCR assay quantifying the ruminai pool size and duodenal flow of protozoal nitrogen. J. Dairy Sci. 88:2083-2095.
    • (2005) J. Dairy Sci , vol.88 , pp. 2083-2095
    • Sylvester, J.T.1    Karnati, S.K.2    Yu, Z.3    Newbold, C.J.4    Firkins, J.L.5
  • 82
    • 0025264584 scopus 로고    scopus 로고
    • Forming Units- Novel Method for Quantification of Fibrolytic Fungal Populations From the Digestive-Tract Ecosystem. Appl. Environ. Microbiol. 56:1073-1078
    • Forming Units- Novel Method for Quantification of Fibrolytic Fungal Populations From the Digestive-Tract Ecosystem. Appl. Environ. Microbiol. 56:1073-1078.
  • 83
    • 0032842306 scopus 로고    scopus 로고
    • Phylogenetic study of methanogens associated with rumen ciliates
    • Tokura, M., I. Chagan, K. Ushida and Y. Kojima. 1999. Phylogenetic study of methanogens associated with rumen ciliates. Curr. Microbiol. 39:123-128.
    • (1999) Curr. Microbiol , vol.39 , pp. 123-128
    • Tokura, M.1    Chagan, I.2    Ushida, K.3    Kojima, Y.4
  • 84
    • 0032617899 scopus 로고    scopus 로고
    • Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows
    • Weimer, P. J., G. C. Waghorn, C. L. Odt and D. R. Mertens. 1999. Effect of diet on populations of three species of ruminal cellulolytic bacteria in lactating dairy cows. J. Dairy Sci. 82:122-134.
    • (1999) J. Dairy Sci , vol.82 , pp. 122-134
    • Weimer, P.J.1    Waghorn, G.C.2    Odt, C.L.3    Mertens, D.R.4
  • 86
    • 0031816030 scopus 로고    scopus 로고
    • Whitford, M. F., R. J. Forster, C. E. Beard, J. Gong and R. M. leather. 1998. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe 4:153-163.
    • Whitford, M. F., R. J. Forster, C. E. Beard, J. Gong and R. M. leather. 1998. Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe 4:153-163.
  • 87
    • 3142580313 scopus 로고    scopus 로고
    • Phylogenetic analysis of methanogens from the bovine rumen
    • Whitford, M. F., R. M. Teather and R. J. Forster. 2001. Phylogenetic analysis of methanogens from the bovine rumen. BMC Microbiol. 1:5.
    • (2001) BMC Microbiol , vol.1 , pp. 5
    • Whitford, M.F.1    Teather, R.M.2    Forster, R.J.3
  • 89
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode, F. von, U. B. Gobel and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
    • (1997) FEMS Microbiol. Rev , vol.21 , pp. 213-229
    • Wintzingerode1    von, F.2    Gobel, U.B.3    Stackebrandt, E.4
  • 90
    • 0141643392 scopus 로고    scopus 로고
    • Improved strategy for presumptive identification of methanogens using 16S riboprinting
    • Wright, A.-D. G. and C. L. Pimm. 2003. Improved strategy for presumptive identification of methanogens using 16S riboprinting. J. Microbiol. Mthds. 55:337-349.
    • (2003) J. Microbiol. Mthds , vol.55 , pp. 337-349
    • Wright, A.-D.G.1    Pimm, C.L.2
  • 91
    • 33847173204 scopus 로고    scopus 로고
    • 16S/18S rDNA clone library construction and analysis
    • Ed. H. makkar and C. S. McSweeney, Springer, The Netherlands
    • Wright, A. D. G., K. Tajima and R. I. Aminov. 2005. 16S/18S rDNA clone library construction and analysis. In Methods in Gut Microbial Ecology for ruminants (Ed. H. makkar and C. S. McSweeney). Springer, The Netherlands.
    • (2005) Methods in Gut Microbial Ecology for ruminants
    • Wright, A.D.G.1    Tajima, K.2    Aminov, R.I.3
  • 92
    • 33744800527 scopus 로고    scopus 로고
    • Molecular identification of methanogenic archaea from sheep in Queensland, Australia reveal more uncultured novel archaea
    • In press
    • Wright, A-D. G., A. F. Toovey and C. L. Pimm. 2006. Molecular identification of methanogenic archaea from sheep in Queensland, Australia reveal more uncultured novel archaea. Anaerobe. In press.
    • (2006) Anaerobe
    • Wright, A.-D.G.1    Toovey, A.F.2    Pimm, C.L.3
  • 94
    • 0034251959 scopus 로고    scopus 로고
    • Phylogenetic analysis of methanogens in sheep rumen ecosystem and detection Methanomicrobium mobile by fluorescence in situ hybridization
    • Yanagita, K., Y. Kamagata, M. Kawaharasaki, T. Suzuki, Nakamura and Y. H. Minato. 2000. Phylogenetic analysis of methanogens in sheep rumen ecosystem and detection Methanomicrobium mobile by fluorescence in situ hybridization. Biosci. Biotechnol. Biochem. 64:1737-1742.
    • (2000) Biosci. Biotechnol. Biochem , vol.64 , pp. 1737-1742
    • Yanagita, K.1    Kamagata, Y.2    Kawaharasaki, M.3    Suzuki, T.4    Nakamura5    Minato, Y.H.6
  • 95
    • 15444367620 scopus 로고    scopus 로고
    • Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia
    • Yu, C.-P., R. Ahuja, G. Sayler and K.-H. Chu. 2005. Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia. Appl. Environ. Microbiol. 71:1433-1444.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1433-1444
    • Yu, C.-P.1    Ahuja, R.2    Sayler, G.3    Chu, K.-H.4
  • 96
    • 2442510059 scopus 로고    scopus 로고
    • Improved extraction of PCR-quality community DNA from digesta and fecal samples
    • Yu, Z. and M. Morrison. 2004a. Improved extraction of PCR-quality community DNA from digesta and fecal samples. BioTech. 36:808-812.
    • (2004) BioTech , vol.36 , pp. 808-812
    • Yu, Z.1    Morrison, M.2
  • 97
    • 4143101632 scopus 로고    scopus 로고
    • Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis
    • Yu, Z. and M. Morrison. 2004b. "Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis." Appl. Environ. Microbiol. 70:4800-4806.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4800-4806
    • Yu, Z.1    Morrison, M.2
  • 98
    • 33847091936 scopus 로고    scopus 로고
    • Yu, Z. and R. J. Forster. 2005. PCR-based methods for analysis of populations and gene expression. 3.1 Nucleic acid extraction, oligonucleotide probes and PCR methods. In 'Methods in Gut Microbial Ecology for Ruminants' (Ed. H. Makkar and C. S. McSweeney). Springer, The Netherlands.
    • Yu, Z. and R. J. Forster. 2005. PCR-based methods for analysis of populations and gene expression. 3.1 Nucleic acid extraction, oligonucleotide probes and PCR methods. In 'Methods in Gut Microbial Ecology for Ruminants' (Ed. H. Makkar and C. S. McSweeney). Springer, The Netherlands.
  • 99
    • 0034548862 scopus 로고    scopus 로고
    • Comparison of microbial populations in model and natural rumens using 16S ribosomal RNA-targeted probes
    • Ziemer, C. J., R. Sharp, M. D. Stern, M. A. Cotta, T. R. Whitehead and D. A. Stahl. 2000. Comparison of microbial populations in model and natural rumens using 16S ribosomal RNA-targeted probes. Environ. Microbiol. 2:632-643.
    • (2000) Environ. Microbiol , vol.2 , pp. 632-643
    • Ziemer, C.J.1    Sharp, R.2    Stern, M.D.3    Cotta, M.A.4    Whitehead, T.R.5    Stahl, D.A.6
  • 101
    • 0942279586 scopus 로고    scopus 로고
    • Molecular ecological analysis of the gastrointestinal microbiota: A review
    • Zoetendal, E. G., C. T. Collier, S. Koike, R. I. Mackie and H. R. Gaskins. 2004. Molecular ecological analysis of the gastrointestinal microbiota: A review. J. Nutr. 134:465-472.
    • (2004) J. Nutr , vol.134 , pp. 465-472
    • Zoetendal, E.G.1    Collier, C.T.2    Koike, S.3    Mackie, R.I.4    Gaskins, H.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.