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Volumn 64, Issue 8, 2000, Pages 1737-1742

Phylogenetic analysis of methanogens in sheep rumen ecosystem and detection of methanomicrobium mobile by fluorescence in situ hybridization

Author keywords

In situ hybridization; Methanobrevibacter; Methanogens; Methanomicrobium; Rumen

Indexed keywords

RIBOSOME DNA; RNA 16S;

EID: 0034251959     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.64.1737     Document Type: Article
Times cited : (85)

References (26)
  • 3
    • 0002274189 scopus 로고
    • Interactions between the bacterial species of the rumen
    • (McDonald, I.W., and Warner, A.C.I., Eds.), University of New England Publishing Unit, Armidale, Australia pp
    • Wolin, M. J., Interactions between the bacterial species of the rumen. In: Digestion and Metabolism in the Ruminant (McDonald, I.W., and Warner, A.C.I., Eds.), University of New England Publishing Unit, Armidale, Australia pp. 134-148 (1975).
    • (1975) Digestion and Metabolism in the Ruminant , pp. 134-148
    • Wolin, M.J.1
  • 4
    • 0019433968 scopus 로고
    • Syntrophic association of a butyrate-degrading bacterium and Methanosarcina enriched from bovine rumen fluid
    • Mclnerney, M. J., Mackie, R. I., and Bryant, M. P., Syntrophic association of a butyrate-degrading bacterium and Methanosarcina enriched from bovine rumen fluid. Appl. Environ. Microbiol., 41, 826-828 (1981).
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 826-828
    • McLnerney, M.J.1    Mackie, R.I.2    Bryant, M.P.3
  • 6
    • 0014289637 scopus 로고
    • Characterization of Methanobacterium mobilis, sp. N. Isolation from the bovine rumen
    • Paynter, M. J. B. and Hungate, R. E., Characterization of Methanobacterium mobilis, sp. n. isolation from the bovine rumen. J. Bacteriol., 95, 1943-1951 (1968).
    • (1968) J. Bacteriol. , vol.95 , pp. 1943-1951
    • Paynter, M.J.B.1    Hungate, R.E.2
  • 7
    • 0001656490 scopus 로고
    • Isolation and characterization of Methanobacterium ruminantium n. Sp
    • Smith, P. H. and Hungate, R. E., Isolation and characterization of Methanobacterium ruminantium n. sp. J. Bacteriol., 75, 713-718 (1958).
    • (1958) J. Bacteriol. , vol.75 , pp. 713-718
    • Smith, P.H.1    Hungate, R.E.2
  • 8
    • 0032950808 scopus 로고    scopus 로고
    • Isolation of Methanobrevibacter sp. A ciliate-associated ruminai methanogen
    • Tokura, M., Tajima, K., Ushida, K., Isolation of Methanobrevibacter sp. a ciliate-associated ruminai methanogen. J. Gen. Appl. Microbiol., 45, 43-47 (1999).
    • (1999) J. Gen. Appl. Microbiol. , vol.45 , pp. 43-47
    • Tokura, M.1    Tajima, K.2    Ushida, K.3
  • 9
    • 0030860126 scopus 로고    scopus 로고
    • Microbial community structure in gastrointestinal tracts of domestic animals: Comparative analyses using rRNA-targeted oligonucleotide probe
    • Lin, C., Raskin, L., and Stahl, D. A., Microbial community structure in gastrointestinal tracts of domestic animals: comparative analyses using rRNA-targeted oligonucleotide probe. FEMS Microbiol. Ecol., 22, 281-294 (1997).
    • (1997) FEMS Microbiol. Ecol. , vol.22 , pp. 281-294
    • Lin, C.1    Raskin, L.2    Stahl, D.A.3
  • 10
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K. H., Phylogenetic identification and in situ detection of individual cells without cultivation. Microbiol. Rev., 59, 143-169 (1995).
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 11
    • 0019137730 scopus 로고
    • Association of methanogenic bacteria with rumen cillâtes
    • Vogels, G. D., Hoppe, W. F., and Stumm, C. K., Association of methanogenic bacteria with rumen cillâtes. Appl. Environ. Microbiol., 40, 608-612 (1980).
    • (1980) Appl. Environ. Microbiol. , vol.40 , pp. 608-612
    • Vogels, G.D.1    Hoppe, W.F.2    Stumm, C.K.3
  • 14
    • 0032080814 scopus 로고    scopus 로고
    • Taxon-specific association between protozoal and methanogen populations in the rumen and a model rumen system
    • Sharp, R., Ziemer, C. J., Stern, M. D., and Stahl, D. A., Taxon-specific association between protozoal and methanogen populations in the rumen and a model rumen system. FEMS Microbiol. Ecol., 26, 71-78 (1998).
    • (1998) FEMS Microbiol. Ecol. , vol.26 , pp. 71-78
    • Sharp, R.1    Ziemer, C.J.2    Stern, M.D.3    Stahl, D.A.4
  • 15
    • 0032842306 scopus 로고    scopus 로고
    • Phylogenetic study of methanogen associated with rumen ciliates
    • Tokura, M., Chagan, I., Ushida, K., and Kojima, Y., Phylogenetic study of methanogen associated with rumen ciliates. Curr. Microbiol., 39, 123-128 (1999).
    • (1999) Curr. Microbiol. , vol.39 , pp. 123-128
    • Tokura, M.1    Chagan, I.2    Ushida, K.3    Kojima, Y.4
  • 16
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • Weisburg, W. G., Barns, S. M., Pelletier, D. A., and Lane, D. J., 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol., 173, 697-703 (1991).
    • (1991) J. Bacteriol. , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 19
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res., 22, 4673-4680 (1994).
    • (1994) Nucleic Acid Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 20
    • 0023375195 scopus 로고
    • The neighbor-joining methods: A new methods for constructing phylogenetic trees
    • Saito, N. and Nei, M., The neighbor-joining methods: a new methods for constructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saito, N.1    Nei, M.2
  • 22
    • 0000461280 scopus 로고
    • Confidence limits of phylogenies: An approach using the boot strap
    • Felsenstein, J., Confidence limits of phylogenies: an approach using the boot strap. Evolution 39, 783-791 (1985).
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 23
    • 0003341851 scopus 로고
    • Nucleic Acid Techniques in Bacterial Systematics
    • E. Stackebrandt, and M. Goodfellow, Eds., John Wiley & Sons Ltd. New York pp
    • Stahl, D. A. and Amann, R., Nucleic Acid Techniques in Bacterial Systematics. “Development and application of nucleic acid probes” E. Stackebrandt, and M. Goodfellow, Eds., John Wiley & Sons Ltd. New York pp. 205-248 (1991).
    • (1991) Development and Application of Nucleic Acid Probes , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 24
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., Binder, B. J., Olsen, R. J., Chisholm, S. W., Devereux, R. and Stahl, D. A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol., 56, 1919-1925 (1990).
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olsen, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 25
    • 0033027522 scopus 로고    scopus 로고
    • Fluorescent in situ hybridization using 16S rRNA targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules
    • Sekiguchi, Y., Kamagata, Y., Nakamura, K., Ohashi, A., and Harada, H., Fluorescent in situ hybridization using 16S rRNA targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Appl. Environ. Microbiol., 65, 1280-1288 (1999).
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1280-1288
    • Sekiguchi, Y.1    Kamagata, Y.2    Nakamura, K.3    Ohashi, A.4    Harada, H.5
  • 26
    • 0024507744 scopus 로고
    • Phylogenetic strain: Ribosomal RNA-based probes for the identification of single microbial cells
    • DeLong, E. F., Wickham, G. S., and Pace, N. R., Phylogenetic strain: ribosomal RNA-based probes for the identification of single microbial cells. Science, 243, 1360-1363 (1989).
    • (1989) Science , vol.243 , pp. 1360-1363
    • Delong, E.F.1    Wickham, G.S.2    Pace, N.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.