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Volumn , Issue 4, 2003, Pages

Transcription factor as a topological homeostat

Author keywords

Chromatin Architecture; DNA supercoiling; FIS; Review; Transcriptional regulation

Indexed keywords

CHROMATIN ARCHITECTURAL PROTEIN; DNA TOPOISOMERASE; PROTEIN; RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; FACTOR FOR INVERSION STIMULATION;

EID: 0012690768     PISSN: 27686701     EISSN: 27686698     Source Type: Journal    
DOI: 10.2741/969     Document Type: Review
Times cited : (41)

References (87)
  • 1
    • 0025153881 scopus 로고
    • More than just "Histone-like" proteins
    • Schmid, M.B: More than just "Histone-like" proteins. Cell 63, 451-453 (1990)
    • (1990) Cell , vol.63 , pp. 451-453
    • Schmid, M.B.1
  • 2
    • 0034065133 scopus 로고    scopus 로고
    • Escherichia coli response to hydrogen peroxide: A role for DNA supercoiling, topoisomerase I and Fis
    • Weinstein-Fischer, D., Elgrably-Weiss, M. & S. Altuvia: Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis. Mol Microbiol 35, 1413-1420 (2000)
    • (2000) Mol Microbiol , vol.35 , pp. 1413-1420
    • Weinstein-Fischer, D.1    Elgrably-Weiss, M.2    Altuvia, S.3
  • 4
    • 0028825609 scopus 로고
    • Role of HU proteins in forming and constraining supercoils of chromosomal DNA in Escherichia coli
    • Tanaka, H., Yasuzawa, K. Kohmo, K. Goshima, N. Kano, Y. Saiki, T. & F. Imamoto: Role of HU proteins in forming and constraining supercoils of chromosomal DNA in Escherichia coli. Mol Ge.n Genet 248, 518-526 (1995)
    • (1995) Mol Ge.n Genet , vol.248 , pp. 518-526
    • Tanaka, H.1    Yasuzawa, K.2    Kohmo, K.3    Goshima, N.4    Kano, Y.5    Saiki, T.6    Imamoto, F.7
  • 5
    • 0029939230 scopus 로고    scopus 로고
    • Cross-talk between topoisomerase I and HU in Escherichia coli
    • Bensaid, A., Almeida, A., Drlica, K. & J. Rouviere-Yaniv: Cross-talk between topoisomerase I and HU in Escherichia coli. J Mol Biol 256, 292-300 (1996)
    • (1996) J Mol Biol , vol.256 , pp. 292-300
    • Bensaid, A.1    Almeida, A.2    Drlica, K.3    Rouviere-Yaniv, J.4
  • 6
    • 0029991026 scopus 로고    scopus 로고
    • Histone-like protein HU and bacterial DNA topology: Suppression of an HU deficiency by gyrase mutations
    • Malik, M., Bensaid, A., Rouviere-Yaniv, J. & K. Drlica: Histone-like protein HU and bacterial DNA topology: suppression of an HU deficiency by gyrase mutations. J Mol Biol 256, 66-67 (1996)
    • (1996) J Mol Biol , vol.256 , pp. 66-67
    • Malik, M.1    Bensaid, A.2    Rouviere-Yaniv, J.3    Drlica, K.4
  • 7
    • 0029891714 scopus 로고    scopus 로고
    • Cyclic AMP receptor protein controls gyrA transcription and alters DNA topology after nutritional upshift in Escherichia coli
    • Gomez, J.M., Baquero, F. & J. Blazquez: Cyclic AMP receptor protein controls gyrA transcription and alters DNA topology after nutritional upshift in Escherichia coli. J Bacteriol 178, 3331-3334 (1996)
    • (1996) J Bacteriol , vol.178 , pp. 3331-3334
    • Gomez, J.M.1    Baquero, F.2    Blazquez, J.3
  • 8
    • 0035082155 scopus 로고    scopus 로고
    • DNA supercoiling and transcription in Escherichia coli - The FIS connection
    • Travers, A., Schneider, R. & G. Muskhelishvili: DNA supercoiling and transcription in Escherichia coli - the FIS connection. Biochimie 83, 213-217 (2001)
    • (2001) Biochimie , vol.83 , pp. 213-217
    • Travers, A.1    Schneider, R.2    Muskhelishvili, G.3
  • 9
    • 0021760528 scopus 로고
    • H1a, an E. coli DNA-binding protein which accumulates in stationary phase
    • Spassky, A., Rimsky, S., Carreau, H. and H. Bue: H1a, an E. coli DNA-binding protein which accumulates in stationary phase. Nucleic Acids Res 12, 5321-5340 (1984)
    • (1984) Nucleic Acids Res , vol.12 , pp. 5321-5340
    • Spassky, A.1    Rimsky, S.2    Carreau, H.3    Bue, H.4
  • 10
    • 0023430342 scopus 로고
    • Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
    • Balke, V.L. & J.D. Gralla: Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J Bacteriol 169, 4499-4506 (1987)
    • (1987) J Bacteriol , vol.169 , pp. 4499-4506
    • Balke, V.L.1    Gralla, J.D.2
  • 11
    • 0027258405 scopus 로고
    • Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation
    • Dersch, P., Schmidt, K. & E. Bremer: Synthesis of the Escherichia coli K-12 nucleoid-associated DNA-binding protein H-NS is subjected to growth-phase control and autoregulation. Mol Microbiol 8, 875-889 (1993)
    • (1993) Mol Microbiol , vol.8 , pp. 875-889
    • Dersch, P.1    Schmidt, K.2    Bremer, E.3
  • 12
    • 0028307609 scopus 로고
    • Growth phase variation of integration host factor level in Escherichia coli
    • Ditto, M.D., Roberts, D. & R.A. Weisberg: Growth phase variation of integration host factor level in Escherichia coli. J Bacteriol 176, 3738-3748 (1994)
    • (1994) J Bacteriol , vol.176 , pp. 3738-3748
    • Ditto, M.D.1    Roberts, D.2    Weisberg, R.A.3
  • 13
    • 0030601787 scopus 로고    scopus 로고
    • Regulation of HUa and HUb by CRP and FIS in Escherichia coli
    • Claret, L. & J. Rouvière-Yaniv: Regulation of HUa and HUb by CRP and FIS in Escherichia coli. J Mol Biol 263, 126-139 (1996)
    • (1996) J Mol Biol , vol.263 , pp. 126-139
    • Claret, L.1    Rouvière-Yaniv, J.2
  • 14
    • 0030668269 scopus 로고    scopus 로고
    • FIS modulates growth-phase dependent topological transitions of DNA in E. coli
    • Schneider, R., Travers, A. A. & G. Muskhelishvili: FIS modulates growth-phase dependent topological transitions of DNA in E. coli. Mol Microbiol 26, 519-530 (1997).
    • (1997) Mol Microbiol , vol.26 , pp. 519-530
    • Schneider, R.1    Travers, A.A.2    Muskhelishvili, G.3
  • 15
    • 0032716841 scopus 로고    scopus 로고
    • Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
    • Talukder, A. A., Iwata, A., Nishimura, A., Ueda, S. & A. Ishihama: Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181, 6361-6370 (1999)
    • (1999) J Bacteriol , vol.181 , pp. 6361-6370
    • Talukder, A.A.1    Iwata, A.2    Nishimura, A.3    Ueda, S.4    Ishihama, A.5
  • 16
  • 17
    • 0019821354 scopus 로고
    • Enhancement of ribosomal ribonucleic acid synthesis by deoxyribonucleic acid gyrase activity in Escherichia coli
    • Oostra, B.A., van Vliet, A.J., Ab,G. & M. Gruber: Enhancement of ribosomal ribonucleic acid synthesis by deoxyribonucleic acid gyrase activity in Escherichia coli. J Bacteriol 148, 782-787 (1981)
    • (1981) J Bacteriol , vol.148 , pp. 782-787
    • Oostra, B.A.1    Van Vliet, A.J.2    Ab, G.3    Gruber, M.4
  • 18
    • 0028089818 scopus 로고
    • Modulation of tyrT promoter activity by template supercoiling in vivo
    • Bowater, R.P., Chen, D. & D.M.J. Lilley: Modulation of tyrT promoter activity by template supercoiling in vivo. EMBO J 13, 5647-5655 (1994)
    • (1994) EMBO J , vol.13 , pp. 5647-5655
    • Bowater, R.P.1    Chen, D.2    Lilley, D.M.J.3
  • 19
    • 0029036349 scopus 로고
    • DNA topology and the global control of bacterial gene expression: Implications for the regulation of virulence gene expression
    • Dorman, C: DNA topology and the global control of bacterial gene expression: implications for the regulation of virulence gene expression. Microbiology 141, 1271-1280 (1995)
    • (1995) Microbiology , vol.141 , pp. 1271-1280
    • Dorman, C.1
  • 20
    • 0030755365 scopus 로고    scopus 로고
    • DNA supercoiling and bacterial adaptation: Thermotolerance and thermoresistance
    • Tse-Dinh, Y. C., Qi H., & R. Menzel: DNA supercoiling and bacterial adaptation: thermotolerance and thermoresistance. Trends Microbiol 8, 323-326 (1997)
    • (1997) Trends Microbiol , vol.8 , pp. 323-326
    • Tse-Dinh, Y.C.1    Qi, H.2    Menzel, R.3
  • 21
    • 2642714953 scopus 로고    scopus 로고
    • The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control
    • Figueroa-Bossi, N., Guerin, M., Rahmouni, R., Leng, M. & L. Bossi: The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control. EMBO J 17, 2359-67 (1998)
    • (1998) EMBO J , vol.17 , pp. 2359-2367
    • Figueroa-Bossi, N.1    Guerin, M.2    Rahmouni, R.3    Leng, M.4    Bossi, L.5
  • 22
    • 0033814887 scopus 로고    scopus 로고
    • The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA
    • Schneider,R., Travers,A. & G. Muskhelishvili: The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA. Mol Microbiol 38, 167-176 (2000)
    • (2000) Mol Microbiol , vol.38 , pp. 167-176
    • Schneider, R.1    Travers, A.2    Muskhelishvili, G.3
  • 23
    • 0037084067 scopus 로고    scopus 로고
    • Transcriptional regulation of the fis operon involves a module of multiple coupled promoters
    • Nasser, W., Rochman, M. & G. Muskhelishvili: Transcriptional regulation of the fis operon involves a module of multiple coupled promoters. EMBO J 21, 715-724(2002)
    • (2002) EMBO J , vol.21 , pp. 715-724
    • Nasser, W.1    Rochman, M.2    Muskhelishvili, G.3
  • 24
    • 0036251235 scopus 로고    scopus 로고
    • Promoter protection by a transcription factor acting as a local topological homeostat
    • Rochman, M., Aviv, M., Glaser, G. and G. Muskhelishvili: Promoter protection by a transcription factor acting as a local topological homeostat. EMBO Reports 3, 335-360 (2002)
    • (2002) EMBO Reports , vol.3 , pp. 335-360
    • Rochman, M.1    Aviv, M.2    Glaser, G.3    Muskhelishvili, G.4
  • 25
    • 0023162378 scopus 로고
    • All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling
    • Borowiec, J. & J. D. Gralla: All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling. J Mol Biol 195, 89-97 (1987)
    • (1987) J Mol Biol , vol.195 , pp. 89-97
    • Borowiec, J.1    Gralla, J.D.2
  • 26
    • 0345077411 scopus 로고
    • Promoters largely determine the efficiency of repressor action
    • Lanzer, M. & H. Bujard: Promoters largely determine the efficiency of repressor action. Proc Natl Acad Sci USA 85, 8973-8977 (1988)
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 8973-8977
    • Lanzer, M.1    Bujard, H.2
  • 27
    • 0029844676 scopus 로고    scopus 로고
    • FIS is a regulator of metabolism in Escherichia coli
    • Gonzalez-Gil, G., Bringman, P. & R. Kahmann: FIS is a regulator of metabolism in Escherichia coli. Mol Microbiol 22, 21-29 (1996)
    • (1996) Mol Microbiol , vol.22 , pp. 21-29
    • Gonzalez-Gil, G.1    Bringman, P.2    Kahmann, R.3
  • 28
    • 0033021173 scopus 로고    scopus 로고
    • Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival
    • Ishihama, A: Modulation of the nucleoid, the transcription apparatus, and the translation machinery in bacteria for stationary phase survival, Genes Cells 4, 135-143 (1999)
    • (1999) Genes Cells , vol.4 , pp. 135-143
    • Ishihama, A.1
  • 29
    • 0026620949 scopus 로고
    • Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli
    • Ball, C.A., Osuna, R., Ferguson, K.C. & R.C. Johnson: Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli. J Bacteriol 174, 8043-8056 (1992)
    • (1992) J Bacteriol , vol.174 , pp. 8043-8056
    • Ball, C.A.1    Osuna, R.2    Ferguson, K.C.3    Johnson, R.C.4
  • 30
    • 0026569267 scopus 로고
    • The E. coli fis promoter is subject to stringent control and autoregulation
    • Ninnemann, O., Koch,C. & R. Kahmann: The E. coli fis promoter is subject to stringent control and autoregulation. EMBO J 11, 1075-1083 (1992)
    • (1992) EMBO J , vol.11 , pp. 1075-1083
    • Ninnemann, O.1    Koch, C.2    Kahmann, R.3
  • 31
    • 19244372639 scopus 로고    scopus 로고
    • Variable structures of FIS-DNA complexes determined by flanking DNA-protein contacts
    • Pan, C.Q., Finkel, S.E., Cramton, S.E., Feng, J., Sigman, D.S. & R.C. Johnson:. Variable structures of FIS-DNA complexes determined by flanking DNA-protein contacts. J Mol Biol 264, 675-695 (1996)
    • (1996) J Mol Biol , vol.264 , pp. 675-695
    • Pan, C.Q.1    Finkel, S.E.2    Cramton, S.E.3    Feng, J.4    Sigman, D.S.5    Johnson, R.C.6
  • 32
    • 0028823742 scopus 로고
    • Effects of base substitutions on the binding of a DNA-bending protein
    • Bailly, C., Waring, M. & A.A. Travers: Effects of base substitutions on the binding of a DNA-bending protein. J Mol Biol.253, 1-7 (1995)
    • (1995) J Mol Biol , vol.253 , pp. 1-7
    • Bailly, C.1    Waring, M.2    Travers, A.A.3
  • 33
    • 0023771741 scopus 로고
    • Empirical estimation of protein-induced DNA bending angles: Applications to λ site-specific recombination complexes
    • Thompson, J. F. & A. Landy: Empirical estimation of protein-induced DNA bending angles: applications to λ site-specific recombination complexes. Nucl Acids Res 16, 9687-9705 (1988)
    • (1988) Nucl Acids Res , vol.16 , pp. 9687-9705
    • Thompson, J.F.1    Landy, A.2
  • 35
    • 0028559940 scopus 로고
    • Interaction of Fis protein with DNA: Bending and specuficity of binding
    • Betermier, M., Galas, D.J. & M. Chandler: Interaction of Fis protein with DNA: bending and specuficity of binding. Biochimie 76, 958-967 (1994)
    • (1994) Biochimie , vol.76 , pp. 958-967
    • Betermier, M.1    Galas, D.J.2    Chandler, M.3
  • 37
    • 0033869982 scopus 로고    scopus 로고
    • Two types of localisation of DNA-binding proteins within the Escherichia coli nucleoid
    • Talukder, A.A., Hiraga, S. & A. Ishihama: Two types of localisation of DNA-binding proteins within the Escherichia coli nucleoid. Genes Cells 5, 613-626 (2000)
    • (2000) Genes Cells , vol.5 , pp. 613-626
    • Talukder, A.A.1    Hiraga, S.2    Ishihama, A.3
  • 38
    • 0002098922 scopus 로고
    • DNA conformation and configuration in protein-DNA complexes
    • Travers. A. A.: DNA conformation and configuration in protein-DNA complexes. Curr Opin Struct Biol 2, 71-77 (1992)
    • (1992) Curr Opin Struct Biol , vol.2 , pp. 71-77
    • Travers, A.A.1
  • 39
    • 0032952075 scopus 로고    scopus 로고
    • DNA bendability - A novel feature in E. coli promoter recognition
    • Ozoline, O.N, Deev, A.A. & E.N. Trifonov: DNA bendability - a novel feature in E. coli promoter recognition. J Biomol Struct Dyn 16, 825-831 (1999)
    • (1999) J Biomol Struct Dyn , vol.16 , pp. 825-831
    • Ozoline, O.N.1    Deev, A.A.2    Trifonov, E.N.3
  • 40
    • 0023089714 scopus 로고
    • Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters
    • Plaskon, R.R. & R.M. Wartell: Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters. Nucl Acids Res 15, 785-796 (1987)
    • (1987) Nucl Acids Res , vol.15 , pp. 785-796
    • Plaskon, R.R.1    Wartell, R.M.2
  • 42
    • 0024297575 scopus 로고
    • Curved helix segments can uniquely orient the topology of supertwisted DNA
    • Laundon, C.H. & J.D. Griffith: Curved helix segments can uniquely orient the topology of supertwisted DNA. Cell 52, 545-549 (1988)
    • (1988) Cell , vol.52 , pp. 545-549
    • Laundon, C.H.1    Griffith, J.D.2
  • 43
    • 11744350227 scopus 로고    scopus 로고
    • Modelling large DNA molecules: Long-range interactions and regulation of transcription
    • Eds: Eckstein, F. and Lilley, D.M.J., Springer-Verlag, Germany
    • Langowski, J: Modelling large DNA molecules: long-range interactions and regulation of transcription. In: Nucleic Acids and Molecular Biology, vol 11. Mechanisms of Transcription. Eds: Eckstein, F. and Lilley, D.M.J., Springer-Verlag, Germany, pp. 219-237 (1997)
    • (1997) Nucleic Acids and Molecular Biology, Vol 11. Mechanisms of Transcription , vol.11 , pp. 219-237
    • Langowski, J.1
  • 44
    • 0034666271 scopus 로고    scopus 로고
    • H-NS mediated compaction of DNA visulised by atomic force microscopy
    • Dame, R.T., Wyman, C. & N. Goosen: H-NS mediated compaction of DNA visulised by atomic force microscopy. Nucleic Acids Res 28, 3504-3510 (2000)
    • (2000) Nucleic Acids Res , vol.28 , pp. 3504-3510
    • Dame, R.T.1    Wyman, C.2    Goosen, N.3
  • 45
    • 0025880637 scopus 로고
    • Fis-induced bending of a region upstream of the promoter activates transcription of the E. coli thrU(tufB) operon
    • Verbeek, H., Nilsson, L. & L. Bosch: Fis-induced bending of a region upstream of the promoter activates transcription of the E. coli thrU(tufB) operon. Biochimie 73, 713-718 (1991)
    • (1991) Biochimie , vol.73 , pp. 713-718
    • Verbeek, H.1    Nilsson, L.2    Bosch, L.3
  • 46
    • 0026532912 scopus 로고
    • Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent
    • Newlands, J.T., Josaitis, C., Ross, W. & R. Gourse: Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent. Nucl Acids Res 20, 719-726 (1992)
    • (1992) Nucl Acids Res , vol.20 , pp. 719-726
    • Newlands, J.T.1    Josaitis, C.2    Ross, W.3    Gourse, R.4
  • 47
    • 0026550347 scopus 로고
    • Analysis of the Fis-dependent and Fis-independent transcription activation mechanisms of the Escherichia coli ribosomal RNA P1 promoter
    • Zacharias, M., Göringer, H.U. & R. Wagner: Analysis of the Fis-dependent and Fis-independent transcription activation mechanisms of the Escherichia coli ribosomal RNA P1 promoter. Biochemistry 31, 2621-2628 (1992)
    • (1992) Biochemistry , vol.31 , pp. 2621-2628
    • Zacharias, M.1    Göringer, H.U.2    Wagner, R.3
  • 48
    • 0027251477 scopus 로고
    • The E. coli FIS protein is not required for the activation of tyrT transcription on simple nutritional upshift
    • Lazarus, L.R. & A.A. Travers: The E. coli FIS protein is not required for the activation of tyrT transcription on simple nutritional upshift. EMBO J 12, 2483-2494 (1993)
    • (1993) EMBO J , vol.12 , pp. 2483-2494
    • Lazarus, L.R.1    Travers, A.A.2
  • 49
    • 0030927885 scopus 로고    scopus 로고
    • FIS activates sequential steps during transcription initiation at a stable RNA promoter
    • Muskhelishvili, G., Buckle, M., Heumann, H., Kahmann, R. & A.A. Travers: FIS activates sequential steps during transcription initiation at a stable RNA promoter. EMBO J 16, 3655-3665 (1997)
    • (1997) EMBO J , vol.16 , pp. 3655-3665
    • Muskhelishvili, G.1    Buckle, M.2    Heumann, H.3    Kahmann, R.4    Travers, A.A.5
  • 50
    • 0035688744 scopus 로고    scopus 로고
    • Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli
    • Hirvonen, C.A., Ross, W., Wozniak, C.E., Marasco, E., Anthony, J. R., Aiar, S.E., Newburn, V.H. & R.L. Gourse: Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J Bacteriol 183, 6305-6314 (2001)
    • (2001) J Bacteriol , vol.183 , pp. 6305-6314
    • Hirvonen, C.A.1    Ross, W.2    Wozniak, C.E.3    Marasco, E.4    Anthony, J.R.5    Aiar, S.E.6    Newburn, V.H.7    Gourse, R.L.8
  • 51
    • 0032568862 scopus 로고    scopus 로고
    • DNA microloops and microdomains - A general mechanism for transcription activation by torsional transmission
    • Travers, A.A. & G. Muskhelishvili: DNA microloops and microdomains - a general mechanism for transcription activation by torsional transmission. J Mol Biol 279, 1027-1043 (1998)
    • (1998) J Mol Biol , vol.279 , pp. 1027-1043
    • Travers, A.A.1    Muskhelishvili, G.2
  • 52
    • 0026542543 scopus 로고
    • The apical localisation of transcribing RNA polymerase on supercoiled DNA prevents their rotation around the template
    • ten Heggeler-Bordier, B., Wahli, W., Adrian, M., Stasiak, A. & J. Dubochet: The apical localisation of transcribing RNA polymerase on supercoiled DNA prevents their rotation around the template. EMBO J 11, 667-672 (1992)
    • (1992) EMBO J , vol.11 , pp. 667-672
    • Ten Heggeler-Bordier, B.1    Wahli, W.2    Adrian, M.3    Stasiak, A.4    Dubochet, J.5
  • 54
    • 4043099786 scopus 로고    scopus 로고
    • FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the E. coli tyrT promoter
    • Pemberton, I.K., Muskhelishvili, G., Travers, A.A. & M. Buckle: FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the E. coli tyrT promoter. J Mol Biol 299, 859-864 (2002)
    • (2002) J Mol Biol , vol.299 , pp. 859-864
    • Pemberton, I.K.1    Muskhelishvili, G.2    Travers, A.A.3    Buckle, M.4
  • 55
    • 0007747764 scopus 로고    scopus 로고
    • The Stabilization of DNA Microloops by FIS - A mechanism for torsional transmission in transcription activation and DNA inversion
    • Eds: Eckstein, F. and Lilley, D.M.J., Springer-Verlag, Germany
    • Muskhelishvili, G. & A. A. Travers: The Stabilization of DNA Microloops by FIS - A mechanism for torsional transmission in transcription activation and DNA inversion. In: Nucleic Acids and Molecular Biology, vol 11. Mechanisms of Transcription. Eds: Eckstein, F. and Lilley, D.M.J., Springer-Verlag, Germany, pp. 179-190 (1997)
    • (1997) Nucleic Acids and Molecular Biology, Vol 11. Mechanisms of Transcription , vol.11 , pp. 179-190
    • Muskhelishvili, G.1    Travers, A.A.2
  • 56
    • 0025163439 scopus 로고
    • E. coli Fis protein activates ribosomal RNA transcription in vitro and in vivo
    • Ross, W., Thompson, J.F., Newlands, J.T.& R. Gourse: E. coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. EMBO J 9, 3733-3742 (1990)
    • (1990) EMBO J , vol.9 , pp. 3733-3742
    • Ross, W.1    Thompson, J.F.2    Newlands, J.T.3    Gourse, R.4
  • 57
    • 0033404486 scopus 로고    scopus 로고
    • A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
    • Schneider, R., Travers, A., Kutateladze, T. & G. Muskhelishvili: A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol Microbiol 34, 953-964 (1999)
    • (1999) Mol Microbiol , vol.34 , pp. 953-964
    • Schneider, R.1    Travers, A.2    Kutateladze, T.3    Muskhelishvili, G.4
  • 58
    • 0028949625 scopus 로고
    • FIS and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoter
    • Muskhelishvili, G., Travers, A.A., Heumann, H. & R. Kahmann: FIS and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoter. EMBO J 14, 1446-1452 (1995)
    • (1995) EMBO J , vol.14 , pp. 1446-1452
    • Muskhelishvili, G.1    Travers, A.A.2    Heumann, H.3    Kahmann, R.4
  • 59
    • 0022230224 scopus 로고
    • DNA bending and its relation to nucleosome positioning
    • Drew, H.R. & A.A. Travers: DNA bending and its relation to nucleosome positioning. J Mol Biol. 186, 773-790 (1985)
    • (1985) J Mol Biol , vol.186 , pp. 773-790
    • Drew, H.R.1    Travers, A.A.2
  • 60
    • 0028361419 scopus 로고
    • Location of the intrinsically bent DNA region upstream of the E. coli rrnB P1 promoter
    • Gaal, T., Rao, L., Estrem, S.T., Yang, J., Wartell, R. & R. Gourse: Location of the intrinsically bent DNA region upstream of the E. coli rrnB P1 promoter. Nucl Acids Res 22, 2344-2350 (1994)
    • (1994) Nucl Acids Res , vol.22 , pp. 2344-2350
    • Gaal, T.1    Rao, L.2    Estrem, S.T.3    Yang, J.4    Wartell, R.5    Gourse, R.6
  • 61
    • 0021857751 scopus 로고
    • Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps
    • Buc, H. & W.R. McClure. Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps. Biochemistry 24, 2712-2723 (1985)
    • (1985) Biochemistry , vol.24 , pp. 2712-2723
    • Buc, H.1    McClure, W.R.2
  • 62
    • 0021827364 scopus 로고
    • Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase
    • Spassky, A., Kirkegaard, K. & H. Buc: Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase. Biochemistry 24, 2723-2731 (1985)
    • (1985) Biochemistry , vol.24 , pp. 2723-2731
    • Spassky, A.1    Kirkegaard, K.2    Buc, H.3
  • 63
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby, S. & R. H. Ebright: Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell 79, 743-746 (1994)
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.H.2
  • 64
    • 0023660681 scopus 로고
    • Topological unwinding by RNA polymerase of strong and weak promoters: A comparison between the lac wild-type and the UV5 sites of Escherichia coli
    • Amouyal, M. & H. Buc: Topological unwinding by RNA polymerase of strong and weak promoters: a comparison between the lac wild-type and the UV5 sites of Escherichia coli. J Mo. Biol 195, 795-808(1987)
    • (1987) J Mo. Biol , vol.195 , pp. 795-808
    • Amouyal, M.1    Buc, H.2
  • 65
    • 0024293493 scopus 로고
    • DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation
    • Heumann, H. Ricchetti, M. & W. Verel: DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation. EMBO J 7, 4379-4381 (1988)
    • (1988) EMBO J , vol.7 , pp. 4379-4381
    • Heumann, H.1    Ricchetti, M.2    Verel, W.3
  • 66
    • 0025877466 scopus 로고
    • Catabolite activator protein-induced DNA bending in transcription initiation
    • Zinkel, S.S. & D.M. Crothers: Catabolite activator protein-induced DNA bending in transcription initiation. J Mol Biol 219, 201-215 (1991)
    • (1991) J Mol Biol , vol.219 , pp. 201-215
    • Zinkel, S.S.1    Crothers, D.M.2
  • 67
    • 0033575742 scopus 로고    scopus 로고
    • Wrapping of DNA around the E.coli RNA polymerase open promoter complex
    • Rivetti, C., Guthold, M. & C. Bustamante: Wrapping of DNA around the E.coli RNA polymerase open promoter complex. EMBO J 18, 4464-4475 (1999)
    • (1999) EMBO J , vol.18 , pp. 4464-4475
    • Rivetti, C.1    Guthold, M.2    Bustamante, C.3
  • 68
    • 0037123602 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
    • Murakami, K.S., Masuda, S., Campbell, E.A., Muzzin, O. & S. Darst: Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 296, 1285-1290 (2002)
    • (2002) Science , vol.296 , pp. 1285-1290
    • Murakami, K.S.1    Masuda, S.2    Campbell, E.A.3    Muzzin, O.4    Darst, S.5
  • 69
    • 0026703360 scopus 로고
    • DNA twist as a transcriptional sensor for environmental changes
    • Wang J.Y. & M. Syvanen: DNA twist as a transcriptional sensor for environmental changes. Mol Microbiol 6, 1861-1866 (1992)
    • (1992) Mol Microbiol , vol.6 , pp. 1861-1866
    • Wang, J.Y.1    Syvanen, M.2
  • 70
    • 0021840415 scopus 로고
    • Temperature dependence of the rate constants of the Escherichia coli RNA polymerase -lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening
    • Roe, J.-H., Burgess, R.R. & M.T. Record Jr: Temperature dependence of the rate constants of the Escherichia coli RNA polymerase -lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening. J Mol Biol 184, 441-453 (1985)
    • (1985) J Mol Biol , vol.184 , pp. 441-453
    • Roe, J.-H.1    Burgess, R.R.2    Record Jr., M.T.3
  • 71
    • 0028298256 scopus 로고
    • Promoters responsive to DNA bending: A common theme in prokaryotic gene expression
    • Péréz-Martin, J., Rojo, F. & V. de Lorenzo: Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol Rev 58, 268-290 (1994)
    • (1994) Microbiol Rev , vol.58 , pp. 268-290
    • Péréz-Martin, J.1    Rojo, F.2    De Lorenzo, V.3
  • 72
  • 73
    • 0026509062 scopus 로고
    • Supercoiling, integration host factor, and a dual promoter system, participate in the control of the bacteriophage lambda pL promoter
    • Giladi, H., Koby, S., Gottesman, M.E. & A.B. Oppenheim: Supercoiling, integration host factor, and a dual promoter system, participate in the control of the bacteriophage lambda pL promoter. J Mol Biol 224, 937-948 (1992)
    • (1992) J Mol Biol , vol.224 , pp. 937-948
    • Giladi, H.1    Koby, S.2    Gottesman, M.E.3    Oppenheim, A.B.4
  • 74
    • 0028027303 scopus 로고
    • An arcane role of DNA in transcription activation
    • Ryu, S., Garges, S. & S. Adhya: An arcane role of DNA in transcription activation. Proc Natl Acad Sci USA 91, 8582-8586 (1994)
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8582-8586
    • Ryu, S.1    Garges, S.2    Adhya, S.3
  • 75
    • 0029814025 scopus 로고    scopus 로고
    • Influence of DNA geometry on transcriptional activation in Escherichia coli
    • Dethiollaz, S., Eichenberger, P., & J. Geiselmann: Influence of DNA geometry on transcriptional activation in Escherichia coli. EMBO J 15, 5449-5458 (1996)
    • (1996) EMBO J , vol.15 , pp. 5449-5458
    • Dethiollaz, S.1    Eichenberger, P.2    Geiselmann, J.3
  • 76
    • 0033032415 scopus 로고    scopus 로고
    • DNA bending and wrapping around RNA polymerase: A " revolutionary" model describing transcriptional mechanisms
    • Coulombe B. & Z.F. Burton: DNA bending and wrapping around RNA polymerase: a "revolutionary" model describing transcriptional mechanisms. Microbiol Mol Biol Rev 63, 457-478 (1999)
    • (1999) Microbiol Mol Biol Rev , vol.63 , pp. 457-478
    • Coulombe, B.1    Burton, Z.F.2
  • 77
    • 0030871683 scopus 로고    scopus 로고
    • Structural kinetics of transcription activation at the malT promoter of Escherichia coli by UV laser footprinting
    • Eichenberger, P., Dethiollaz, S., Buc, H. & J. Geiselmann: Structural kinetics of transcription activation at the malT promoter of Escherichia coli by UV laser footprinting. Proc Natl Acad Sci USA 94, 9022-9027 (1997)
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 9022-9027
    • Eichenberger, P.1    Dethiollaz, S.2    Buc, H.3    Geiselmann, J.4
  • 78
    • 0034674174 scopus 로고    scopus 로고
    • The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes
    • Pemberton, I. K., Muskhelishvili, G., Travers, A. A. & M. Buckle: The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes. J Mol Biol 299, 859-864 (2000)
    • (2000) J Mol Biol , vol.299 , pp. 859-864
    • Pemberton, I.K.1    Muskhelishvili, G.2    Travers, A.A.3    Buckle, M.4
  • 79
    • 0028815976 scopus 로고
    • The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
    • Bokal, A.J., Ross, W. & R.L. Gourse: The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter. J Mol Biol 245, 197-207 (1995)
    • (1995) J Mol Biol , vol.245 , pp. 197-207
    • Bokal, A.J.1    Ross, W.2    Gourse, R.L.3
  • 80
    • 0032577448 scopus 로고    scopus 로고
    • IHF modulation of Tn10 transposition: Sensory transduction of supercoiling status via a proposed protein/DNA molecular spring
    • Chalmers, R., Guhathakurta, A., Benjamin, H. & N. Kleckner: IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring. Cell 93, 897-908 (1998)
    • (1998) Cell , vol.93 , pp. 897-908
    • Chalmers, R.1    Guhathakurta, A.2    Benjamin, H.3    Kleckner, N.4
  • 81
    • 0029965473 scopus 로고    scopus 로고
    • Duplex destabilisation in superhelical DNA is predicted to occur at specific transcriptional regulatory regions
    • Benham, C.J.: Duplex destabilisation in superhelical DNA is predicted to occur at specific transcriptional regulatory regions. J Mol Biol 255, 425-434 (1996)
    • (1996) J Mol Biol , vol.255 , pp. 425-434
    • Benham, C.J.1
  • 82
    • 0023176329 scopus 로고
    • Modulation of transcription by DNA supercoiling: A deletion analysis of Escherichia coli gyrA and gyrB promoters
    • Menzel, R, & M. Gellert: Modulation of transcription by DNA supercoiling: A deletion analysis of Escherichia coli gyrA and gyrB promoters. Proc Natl Acad Sci USA 84, 4185-4189 (1987)
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 4185-4189
    • Menzel, R.1    Gellert, M.2
  • 84
    • 0025915548 scopus 로고
    • Bacterial DNA supercoiling and ATP/ADP ratio: Changes associated with salt shock
    • Hsieh, L., Rouvière-Yaniv, J. & K. Drlica: Bacterial DNA supercoiling and ATP/ADP ratio: changes associated with salt shock. J Bacteriol 173, 3914-3917 (1991)
    • (1991) J Bacteriol , vol.173 , pp. 3914-3917
    • Hsieh, L.1    Rouvière-Yaniv, J.2    Drlica, K.3
  • 85
    • 0029041952 scopus 로고
    • Energy buffering of DNA structure fails when Escherichia coli runs out of substrate
    • Jensen, P. R., Loman, L., Petra,B., van der Wejden, C. & H.V. Westerhoff. Energy buffering of DNA structure fails when Escherichia coli runs out of substrate: J Bacteriol 177, 3420-3426 (1995).
    • (1995) J Bacteriol , vol.177 , pp. 3420-3426
    • Jensen, P.R.1    Loman, L.2    Petra, B.3    Van Der Wejden, C.4    Westerhoff, H.V.5
  • 86
    • 0020554566 scopus 로고
    • Regulation of genes for E. coli DNA gyrase: Homeostatic control of DNA supercoiling
    • Menzel, R, & M. Gellert: Regulation of genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling. Cell 34, 105-113 (1983)
    • (1983) Cell , vol.34 , pp. 105-113
    • Menzel, R.1    Gellert, M.2
  • 87
    • 0026508913 scopus 로고
    • FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions
    • Nilsson, L., Verbeek, H., Vijgenboom, E., van Drunen, C., Vanet, A. & L. Bosch: FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions. J Bacteriol 174, 921-929 (1992)
    • (1992) J Bacteriol , vol.174 , pp. 921-929
    • Nilsson, L.1    Verbeek, H.2    Vijgenboom, E.3    Van Drunen, C.4    Vanet, A.5    Bosch, L.6


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