NanoLC-FT-ICR MS improves proteome coverage attainable for ∼3000 laser-microdissected breast carcinoma cells

Proteomics

Volumn 7, Issue 2, 2007, Pages 323-329

  Umar, Arzu ^a   Luider, Theo M ^a   Foekens, John A ^a   Paša Tolić, Ljiljana ^b  

^a JOSEPHINE NEFKENS INSTITUTE   (Netherlands)

^b PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Accurate mass and time tag; Breast cancer; Fourier transform ion cyclotron resonance mass spectrometry; Laser capture microdissection; Nanoscale liquid chromatography

Indexed keywords

BIOLOGICAL MARKER; PROTEOME;

ARTICLE; BREAST CARCINOMA; CELL ISOLATION; CONTROLLED STUDY; HUMAN; HUMAN CELL; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; LASER CAPTURE MICRODISSECTION; LIQUID CHROMATOGRAPHY; NANOARRAY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; TECHNIQUE; TUMOR CELL;

BREAST NEOPLASMS; CARCINOMA; CHROMATOGRAPHY, LIQUID; FEMALE; HUMANS; LASERS; MICRODISSECTION; NANOTECHNOLOGY; PROTEOME; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 33846682587     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200600293     Document Type: Article

References (33)

1. Jemal, A., Siegel, R., Ward, E., Murray, T. et al., CA Cancer J. Clin. 2006, 56, 106-130.
2. Veronesi, U., Boyle, P., Goldhirsch, A., Orecchia, R., Viale, G., Lancet 2005, 365, 1727-1741.
3. Goldhirsch, A., Glick, J. H., Gelber, R. D., Coates, A. S. et al., Ann. Oncol. 2005, 16, 1569-1583.
4. Sant, M., Allemani, C., Capocaccia, R., Hakulinen, T. et al., Int. J. Cancer. 2003, 106, 416-422.
5. van 't Veer, L. J., Dai, H., van de Vijver, M. J., He, Y. D. e al., Nature 2002, 415, 530-536.
6. Jansen, M. P., Foekens, J. A., van Staveren, I. L., Dirkzwager-Kiel, M. M. et al., J. Clin. Oncol. 2005, 23, 732-740.
7. Wang, Y., Klijn, J. G., Zhang, Y., Sieuwerts, A. M. et al., Lancet 2005, 365, 671-679.
8. Emmert-Buck, M. R., Bonner, R. F., Smith, P. D., Chuaqui, R. F. et al., Science 1996, 274, 998-1001.
9. Zhou, G., Li, H., DeCamp, D., Chen, S. et al., Mol. Cell. Proteomics 2002, 1, 117-124.
10. Wulfkuhle, J. D., Sgroi, D. C., Krutzsch, H., McLean, K.et al., Cancer Res. 2002, 62, 6740-6749.
11. Wu, S. L., Hancock, W. S., Goodrich, G. G., Kunitake, S. T., Proteomics 2003, 3, 1037-1046.
12. Zang, L., Palmer, Toy, D., Hancock, W. S. et al., J. Proteome Res. 2004, 3, 604-612.
13. Li, C., Hong, Y., Tan, Y. X., Zhou, H. et al., Mol. Cell. Proteomics 2004, 3, 399-409.
14. Wang, Y., Rudnick, P. A., Evans, E. L., Li, J. et al., Anal. Chem. 2005, 77, 6549-6556.
15. Ornstein, D. K., Gillespie, J. W., Paweletz, C. P., Duray, P. H. et al., Electrophoresis 2000, 21, 2235-2242.
16. Qian, W. J., Camp II, D. G., Smith, R. D., Expert Rev. Proteomics 2004, 1, 87-95.
17. Smith, R. D., Trends Biotechnol. 2002, 20, S3-7.
18. Pasa-Tolic, L., Masselon, C., Barry, R. C., Shen, Y., Smith, R. D., Biotechniques 2004, 37, 621-624, 626-633.
19. Pasa-Tolic, L., Lipton, M. S., Masselon, C. D., Anderson, G. A. et al., J. Mass Spectrom. 2002, 37, 1185-1198.
20. Liu, T., Qian, W. J., Strittmatter, E. F., Camp II, D. G., et al., Anal. Chem. 2004, 76, 5345-5353.
21. Qian, W. J., Monroe, M. E., Liu, T., Jacobs, J. M. et al., Mol. Cell. Proteomics 2005, 4, 700-709.
22. Umar, A., Dalebout, J. C., Timmermans, A. M., Foekens, J. A., Luider, T. M., Proteomics 2005, 5, 2680-2688.
23. Shen, Y., Tolic, N., Masselon, C., Pasa-Tolic, L. et al., Anal. Chem. 2004, 76, 144-154.
24. Shen, Y., Zhao, R., Belov, M. E., Conrads, T. P. et al., Anal. Chem. 2001, 73, 1766-1775.
25. Harkewicz, R., Belov, M. E., Anderson, G. A., Pasa-Tolic, L. et al., J. Am. Soc. Mass Spectrom. 2002, 13, 144-154.
26. Zimmer, J. S., Monroe, M. E., Qian, W. J., Smith, R. D., Mass Spectrom. Rev. 2006, 25, 450-482.
27. Jacobs, J. M., Mottaz, H. M., Yu, L. R., Anderson, D. J. et al., J. Proteome Res. 2004, 3, 68-75.
28. Wang, H., Qian, W. J., Mottaz, H. M., Clauss, T. R. et al., J. Proteome Res. 2005, 4, 2397-2403.
29. Patwardhan, A. J., Strittmatter, E. F., Camp II, D. G., Smith, R. D., Pallavicini, M. G., J. Proteome Res. 2005, 4, 1952-1960.
30. Qian, W. J., Liu, T., Monroe, M. E., Strittmatter, E. F. et al., J. Proteome Res. 2005, 4, 53-62.
31. Jaitly, N., Monroe, M. E., Petyuk, V. A., Clauss, T. R. et al., Anal. Chem. 2006, 78, 7397-7409
32. Norbeck, A. D., Monroe, M. E., Adkins, J. N., Anderson, K. K. et al., J. Am. Soc. Mass Spectrom. 2005, 16, 1239-1249.
33. Liu, T., Qian, W. J., Chen, W. N., Jacobs, J. M. et al., Proteomics 2005, 5, 1263-1273.