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Volumn 23, Issue 2, 2007, Pages

Discovering tightly regulated and differentially expressed gene sets in whole genome expression data

Author keywords

[No Author keywords available]

Indexed keywords

ORGANIC ANION TRANSPORTER; VASCULOTROPIN;

EID: 33846669543     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl315     Document Type: Conference Paper
Times cited : (10)

References (26)
  • 1
    • 0347513219 scopus 로고    scopus 로고
    • Characterizing gene sets with FuncAssociate
    • Berriz,G.F. et al. (2003) Characterizing gene sets with FuncAssociate. Bioinformatics, 19, 2502-2504.
    • (2003) Bioinformatics , vol.19 , pp. 2502-2504
    • Berriz, G.F.1
  • 2
    • 1242341923 scopus 로고    scopus 로고
    • Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses
    • Blalock,E.M. et al. (2004) Incipient Alzheimer's disease: Microarray correlation analyses reveal major transcriptional and tumor suppressor responses. Proc. Natl Acad. Sci. USA, 101, 2173-2178.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2173-2178
    • Blalock, E.M.1
  • 3
    • 20144383240 scopus 로고    scopus 로고
    • Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
    • Bystrykh,L. et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'. Nat. Genet., 37, 225-232.
    • (2005) Nat. Genet. , vol.37 , pp. 225-232
    • Bystrykh, L.1
  • 4
    • 0034661521 scopus 로고    scopus 로고
    • Connexin-43 gap junctions are involved in multiconnexin-expressing stromal support of hemopoietic progenitors and stem cells
    • Cancelas,J.A. et al. (2000) Connexin-43 gap junctions are involved in multiconnexin-expressing stromal support of hemopoietic progenitors and stem cells. Blood, 96, 498-505.
    • (2000) Blood , vol.96 , pp. 498-505
    • Cancelas, J.A.1
  • 5
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • Cui,X. and Churchill,G. (2003) Statistical tests for differential expression in cDNA microarray experiments. Genome Biol., 4, 210.
    • (2003) Genome Biol. , vol.4 , pp. 210
    • Cui, X.1    Churchill, G.2
  • 6
    • 0036578644 scopus 로고    scopus 로고
    • Genmapp, a new tool for viewing and analyzing microarray data on biological pathways
    • Dahlquist,K.D. et al. (2002) Genmapp, a new tool for viewing and analyzing microarray data on biological pathways. Nat. Genet., 31, 19-20.
    • (2002) Nat. Genet. , vol.31 , pp. 19-20
    • Dahlquist, K.D.1
  • 7
    • 0042121055 scopus 로고    scopus 로고
    • Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate
    • Draghici,S. et al. (2003) Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res., 31, 3775-3781.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3775-3781
    • Draghici, S.1
  • 8
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen,M.B. et al. (1998) Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1
  • 9
    • 0037064010 scopus 로고    scopus 로고
    • Insulin-like growth factor 1 induces hypoxia-inducible factor 1-mediated vascular endothelial growth factor expression, which is dependent on MAP kinase and phosphatidylinositol 3-kinase signaling in colon cancer cells
    • Fukuda,R. et al. (2002) Insulin-like growth factor 1 induces hypoxia-inducible factor 1-mediated vascular endothelial growth factor expression, which is dependent on MAP kinase and phosphatidylinositol 3-kinase signaling in colon cancer cells. J. Biol. Chem., 277, 38205-38211.
    • (2002) J. Biol. Chem. , vol.277 , pp. 38205-38211
    • Fukuda, R.1
  • 10
    • 27844486634 scopus 로고    scopus 로고
    • Getromic analysis of metabolic pathway gene expression in mice
    • Ghazalpour,A. et al. (2005) Getromic analysis of metabolic pathway gene expression in mice. Genome Biol., 6, R59.
    • (2005) Genome Biol. , vol.6
    • Ghazalpour, A.1
  • 11
    • 0242495010 scopus 로고    scopus 로고
    • Homeostasis and regeneration of the hematopoietic stem cell pool are altered in SHIP-deficient mice
    • Helgason,C.D. et al. (2003) Homeostasis and regeneration of the hematopoietic stem cell pool are altered in SHIP-deficient mice. Blood, 102, 3541-3547.
    • (2003) Blood , vol.102 , pp. 3541-3547
    • Helgason, C.D.1
  • 12
    • 0942298545 scopus 로고    scopus 로고
    • Endogenous mitochondrial oxidative stress: Neurodegeneration, proteomic analysis, specific respiratory chain defects, and efficacious antioxidant therapy in superoxide dismutase 2 null mice
    • Hinerfeld,D. et al. (2004) Endogenous mitochondrial oxidative stress: neurodegeneration, proteomic analysis, specific respiratory chain defects, and efficacious antioxidant therapy in superoxide dismutase 2 null mice. J. Neurochem., 88, 657-667.
    • (2004) J. Neurochem. , vol.88 , pp. 657-667
    • Hinerfeld, D.1
  • 13
    • 0344319833 scopus 로고    scopus 로고
    • Identifying biological themes within lists of genes with ease
    • Available al
    • Hosack,D. et al. (2003) Identifying biological themes within lists of genes with ease. Genome Biol., 4, R70. Available al http://genomebiology.com/2003/4/6/P4.
    • (2003) Genome Biol. , vol.4
    • Hosack, D.1
  • 14
    • 0038054341 scopus 로고    scopus 로고
    • Pgc-1[alpha]-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
    • Mootha,V.K. et al. (2003) Pgc-1[alpha]-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet., 34, 267-273.
    • (2003) Nat. Genet. , vol.34 , pp. 267-273
    • Mootha, V.K.1
  • 15
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genome-wide variation in human gene expression
    • Morley,M. et al. (2004) Genetic analysis of genome-wide variation in human gene expression. Nature, 430, 743-747.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1
  • 16
    • 0035810240 scopus 로고    scopus 로고
    • Bone marrow cells regenerate infarcted myocardium
    • Orlic,D. et al. (2001) Bone marrow cells regenerate infarcted myocardium. Nature, 410, 701-705.
    • (2001) Nature , vol.410 , pp. 701-705
    • Orlic, D.1
  • 17
    • 3142673366 scopus 로고    scopus 로고
    • Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex
    • Pavlidis,P. et al. (2004) Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex. Neurochem. Res., 29, 1213-1222.
    • (2004) Neurochem. Res. , vol.29 , pp. 1213-1222
    • Pavlidis, P.1
  • 18
    • 0034680102 scopus 로고    scopus 로고
    • Molecular portraits of human breast tumours
    • Perou,C.M. et al. (2000) Molecular portraits of human breast tumours. Nature, 406, 747-752.
    • (2000) Nature , vol.406 , pp. 747-752
    • Perou, C.M.1
  • 19
    • 2642574503 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing, Vienna, AustriaR: R Foundation for Statistical Computing, Vienna, Austria
    • Development Core Team (2005) R Foundation for Statistical Computing, Vienna, AustriaR: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2005) A Language and Environment for Statistical Computing
  • 20
    • 0013772629 scopus 로고
    • Regulation of glucose uptake by muscle. 8. Effects of fatty acids, ketone bodies and pyruvate, and of alloxan-diabetes and starvation, on the uptake and metabolic fate of glucose in rat heart and diaphragm muscles
    • Raudle,P.J. et al. (1964) Regulation of glucose uptake by muscle. 8. effects of fatty acids, ketone bodies and pyruvate, and of alloxan-diabetes and starvation, on the uptake and metabolic fate of glucose in rat heart and diaphragm muscles. Biochem. J., 93, 652-665.
    • (1964) Biochem. J. , vol.93 , pp. 652-665
    • Raudle, P.J.1
  • 21
    • 0028078876 scopus 로고
    • Up-regulation of the connexin43+ gap junction network in haemopoietic tissue before the growth of stem cells
    • Rosendaal,M. et al. (1994) Up-regulation of the connexin43+ gap junction network in haemopoietic tissue before the growth of stem cells. J. Cell Sci., 107, 29-37.
    • (1994) J. Cell Sci. , vol.107 , pp. 29-37
    • Rosendaal, M.1
  • 22
    • 0031742022 scopus 로고    scopus 로고
    • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
    • Spellman,P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
    • (1998) Mol. Biol. Cell , vol.9 , pp. 3273-3297
    • Spellman, P.T.1
  • 23
    • 27344435774 scopus 로고    scopus 로고
    • From the cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian,A. et al. (2005) From the cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl Acad. Sci. USA, 102, 15545-15550.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 24
    • 26444608611 scopus 로고    scopus 로고
    • Discovering statistically significant pathways in expression profiling studies
    • Tian,L. et al. (2005) Discovering statistically significant pathways in expression profiling studies. Proc. Natl Acad. Sci. USA, 102, 13544-13549.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 13544-13549
    • Tian, L.1
  • 25
    • 0038175144 scopus 로고    scopus 로고
    • Gominer: A resource for biological interpretation of genomic and proteomic data
    • Zeeberg,B. et al. (2003) Gominer: A resource for biological interpretation of genomic and proteomic data. Genome Biol., 4, R28.
    • (2003) Genome Biol. , vol.4
    • Zeeberg, B.1
  • 26
    • 0042121250 scopus 로고    scopus 로고
    • ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis
    • Zhong,S. et al. (2003) ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis. Nucleic Acids Res., 31, 3483-3486.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3483-3486
    • Zhong, S.1


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