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Volumn 366, Issue 1, 2007, Pages 132-139

Distinct Modes of Recognition of the Lipoyl Domain as Substrate by the E1 and E3 Components of the Pyruvate Dehydrogenase Multienzyme Complex

Author keywords

lipoyl domain; multienzyme complex; protein protein interaction; pyruvate dehydrogenase; substrate channelling

Indexed keywords

ACYLTRANSFERASE; COCARBOXYLASE; DIHYDROLIPOYL ACETYLTRANSFERASE; MULTIENZYME COMPLEX; NICOTINAMIDE ADENINE DINUCLEOTIDE; PYRUVATE DECARBOXYLASE; PYRUVATE DEHYDROGENASE; PYRUVIC ACID; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; THIOCTIC ACID; UNCLASSIFIED DRUG;

EID: 33846331962     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.11.018     Document Type: Article
Times cited : (19)

References (28)
  • 1
    • 0033790516 scopus 로고    scopus 로고
    • Swinging arms and swinging domains in multifunctional enzymes: catalytic machines for multistep reactions
    • Perham R.N. Swinging arms and swinging domains in multifunctional enzymes: catalytic machines for multistep reactions. Annu. Rev. Biochem. 69 (2000) 961-1004
    • (2000) Annu. Rev. Biochem. , vol.69 , pp. 961-1004
    • Perham, R.N.1
  • 2
    • 18744386656 scopus 로고    scopus 로고
    • Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine
    • Milne J.L., Shi D., Rosenthal P.B., Sunshine J.S., Domingo G.J., Wu X., et al. Molecular architecture and mechanism of an icosahedral pyruvate dehydrogenase complex: a multifunctional catalytic machine. EMBO J. 21 (2002) 4487-5598
    • (2002) EMBO J. , vol.21 , pp. 4487-5598
    • Milne, J.L.1    Shi, D.2    Rosenthal, P.B.3    Sunshine, J.S.4    Domingo, G.J.5    Wu, X.6
  • 3
    • 33645234725 scopus 로고    scopus 로고
    • Molecular structure of a 9-MDa icosahedral pyruvate dehydrogenase subcomplex containing the E2 and E3 enzymes using cryoelectron microscopy
    • Milne J.L., Wu X., Borgnia M.J., Lengyel J.S., Brooks B.R., Shi D., et al. Molecular structure of a 9-MDa icosahedral pyruvate dehydrogenase subcomplex containing the E2 and E3 enzymes using cryoelectron microscopy. J. Biol. Chem. 281 (2006) 4364-4370
    • (2006) J. Biol. Chem. , vol.281 , pp. 4364-4370
    • Milne, J.L.1    Wu, X.2    Borgnia, M.J.3    Lengyel, J.S.4    Brooks, B.R.5    Shi, D.6
  • 4
    • 0035909958 scopus 로고    scopus 로고
    • The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complex
    • Zhou Z.H., McCarthy D.B., O'Connor C.M., Reed L.J., and Stoops J.K. The remarkable structural and functional organization of the eukaryotic pyruvate dehydrogenase complex. Proc. Natl Acad. Sci. USA 98 (2001) 14802-14807
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 14802-14807
    • Zhou, Z.H.1    McCarthy, D.B.2    O'Connor, C.M.3    Reed, L.J.4    Stoops, J.K.5
  • 5
    • 0001752523 scopus 로고
    • Studies on the nature and reactions of protein-bound lipoic acid
    • Reed L.J., Koike M., Levitch M.E., and Leach F.R. Studies on the nature and reactions of protein-bound lipoic acid. J. Biol. Chem. 232 (1958) 143-148
    • (1958) J. Biol. Chem. , vol.232 , pp. 143-148
    • Reed, L.J.1    Koike, M.2    Levitch, M.E.3    Leach, F.R.4
  • 6
    • 0024560461 scopus 로고
    • Kinetics and specificity of reductive acylation of lipoyl domains from 2-oxo acid dehydrogenase multienzyme complexes
    • Graham L.D., Packman L.C., and Perham R.N. Kinetics and specificity of reductive acylation of lipoyl domains from 2-oxo acid dehydrogenase multienzyme complexes. Biochemistry 28 (1989) 1574-1581
    • (1989) Biochemistry , vol.28 , pp. 1574-1581
    • Graham, L.D.1    Packman, L.C.2    Perham, R.N.3
  • 7
    • 0026079562 scopus 로고
    • Domains, motifs, and linkers in 2-oxo acid dehydrogenase multienzyme complexes: a paradigm in the design of a multifunctional protein
    • Perham R.N. Domains, motifs, and linkers in 2-oxo acid dehydrogenase multienzyme complexes: a paradigm in the design of a multifunctional protein. Biochemistry 30 (1991) 8501-8512
    • (1991) Biochemistry , vol.30 , pp. 8501-8512
    • Perham, R.N.1
  • 8
    • 11844278042 scopus 로고
    • Interaction of component enzymes with the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus
    • Lessard I.A., and Perham R.N. Interaction of component enzymes with the peripheral subunit-binding domain of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Biochem. J. 283 (1995) 665-671
    • (1995) Biochem. J. , vol.283 , pp. 665-671
    • Lessard, I.A.1    Perham, R.N.2
  • 9
    • 0030298405 scopus 로고    scopus 로고
    • Recognition of a surface loop of the lipoyl domain underlies substrate channelling in the pyruvate dehydrogenase multienzyme complex
    • Wallis N.G., Allen M.D., Broadhurst R.W., Lessard I.A., and Perham R.N. Recognition of a surface loop of the lipoyl domain underlies substrate channelling in the pyruvate dehydrogenase multienzyme complex. J. Mol. Biol. 263 (1996) 463-474
    • (1996) J. Mol. Biol. , vol.263 , pp. 463-474
    • Wallis, N.G.1    Allen, M.D.2    Broadhurst, R.W.3    Lessard, I.A.4    Perham, R.N.5
  • 10
    • 0034723135 scopus 로고    scopus 로고
    • 2 relaxation experiments: the lipoyl domain and E1 component of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus
    • 2 relaxation experiments: the lipoyl domain and E1 component of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. J. Mol. Biol. 295 (2000) 1023-1037
    • (2000) J. Mol. Biol. , vol.295 , pp. 1023-1037
    • Howard, M.J.1    Chauhan, H.J.2    Domingo, G.J.3    Fuller, C.4    Perham, R.N.5
  • 11
    • 0019227505 scopus 로고
    • Purificaton of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus and resolution of its four component polypeptides
    • Henderson C.E., and Perham R.N. Purificaton of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus and resolution of its four component polypeptides. Biochem. J. 189 (1980) 161-172
    • (1980) Biochem. J. , vol.189 , pp. 161-172
    • Henderson, C.E.1    Perham, R.N.2
  • 12
    • 0034713840 scopus 로고    scopus 로고
    • Restricted motion of the lipoyl-lysine swinging arm in the pyruvate dehydrogenase complex of Escherichia coli
    • Jones D.D., Stott K.M., Howard M.J., and Perham R.N. Restricted motion of the lipoyl-lysine swinging arm in the pyruvate dehydrogenase complex of Escherichia coli. Biochemistry 39 (2000) 8448-8459
    • (2000) Biochemistry , vol.39 , pp. 8448-8459
    • Jones, D.D.1    Stott, K.M.2    Howard, M.J.3    Perham, R.N.4
  • 13
    • 0032813519 scopus 로고    scopus 로고
    • Crystal structure of 2-oxoisovalerate dehydrogenase and the architecture of 2-oxo acid dehydrogenase multienzyme complexes
    • Aevarsson A., Seger K., Turley S., Sokatch J.R., and Hol W.G. Crystal structure of 2-oxoisovalerate dehydrogenase and the architecture of 2-oxo acid dehydrogenase multienzyme complexes. Nature Struct. Biol. 6 (1999) 785-792
    • (1999) Nature Struct. Biol. , vol.6 , pp. 785-792
    • Aevarsson, A.1    Seger, K.2    Turley, S.3    Sokatch, J.R.4    Hol, W.G.5
  • 14
    • 0037161258 scopus 로고    scopus 로고
    • Structure of the pyruvate dehydrogenase multienzyme complex E1 component from Escherichia coli at 1.85 Å
    • Arjunan P., Nemeria N., Brunskill A., Chandrasekhar K., Sax M., Yan Y., et al. Structure of the pyruvate dehydrogenase multienzyme complex E1 component from Escherichia coli at 1.85 Å. Biochemistry 41 (2002) 5213-5221
    • (2002) Biochemistry , vol.41 , pp. 5213-5221
    • Arjunan, P.1    Nemeria, N.2    Brunskill, A.3    Chandrasekhar, K.4    Sax, M.5    Yan, Y.6
  • 15
    • 23444459343 scopus 로고    scopus 로고
    • The molecular origins of specificity in the assembly of a multienzyme complex
    • Frank R.A., Pratap J.V., Pei X.Y., Perham R.N., and Luisi B.F. The molecular origins of specificity in the assembly of a multienzyme complex. Structure 13 (2005) 1119-1130
    • (2005) Structure , vol.13 , pp. 1119-1130
    • Frank, R.A.1    Pratap, J.V.2    Pei, X.Y.3    Perham, R.N.4    Luisi, B.F.5
  • 16
    • 0035864377 scopus 로고    scopus 로고
    • Reaction mechanism for mammalian pyruvate dehydrogenase using natural lipoyl domain substrates
    • Liu S., Gong X., Yan X., Peng T., Baker J.C., Li L., et al. Reaction mechanism for mammalian pyruvate dehydrogenase using natural lipoyl domain substrates. Arch. Biochem. Biophys. 386 (2001) 123-135
    • (2001) Arch. Biochem. Biophys. , vol.386 , pp. 123-135
    • Liu, S.1    Gong, X.2    Yan, X.3    Peng, T.4    Baker, J.C.5    Li, L.6
  • 17
    • 0034607846 scopus 로고    scopus 로고
    • Specificity determinants for the pyruvate dehydrogenase component reaction mapped with mutated and prosthetic group modified lipoyl domains
    • Gong X., Peng T., Yakhnin A., Zolkiewski M., Quinn J., Yeaman S.J., and Roche T.E. Specificity determinants for the pyruvate dehydrogenase component reaction mapped with mutated and prosthetic group modified lipoyl domains. J. Biol. Chem. 275 (2000) 13645-13653
    • (2000) J. Biol. Chem. , vol.275 , pp. 13645-13653
    • Gong, X.1    Peng, T.2    Yakhnin, A.3    Zolkiewski, M.4    Quinn, J.5    Yeaman, S.J.6    Roche, T.E.7
  • 19
    • 0032401519 scopus 로고    scopus 로고
    • Expression of genes encoding the E2 and E3 components of the Bacillus stearothermophilus pyruvate dehydrogenase complex and the stoichiometry of subunit interaction in assembly in vitro
    • Lessard I.A., Domingo G.J., Borges A., and Perham R.N. Expression of genes encoding the E2 and E3 components of the Bacillus stearothermophilus pyruvate dehydrogenase complex and the stoichiometry of subunit interaction in assembly in vitro. Eur. J. Biochem. 258 (1998) 491-501
    • (1998) Eur. J. Biochem. , vol.258 , pp. 491-501
    • Lessard, I.A.1    Domingo, G.J.2    Borges, A.3    Perham, R.N.4
  • 20
    • 0026521978 scopus 로고
    • Expression in Escherichia coli of a sub-gene encoding the lipoyl and peripheral subunit-binding domains of the dihydrolipoamide acetyltransferase component of the pyruvate dehydrogenase complex of Bacillus stearothermophilus
    • Hipps D.S., and Perham R.N. Expression in Escherichia coli of a sub-gene encoding the lipoyl and peripheral subunit-binding domains of the dihydrolipoamide acetyltransferase component of the pyruvate dehydrogenase complex of Bacillus stearothermophilus. Biochem. J. 283 (1992) 665-671
    • (1992) Biochem. J. , vol.283 , pp. 665-671
    • Hipps, D.S.1    Perham, R.N.2
  • 21
    • 0036227864 scopus 로고    scopus 로고
    • Thermodynamic analysis of the binding of component enzymes in the assembly of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus
    • Jung H.-I., Bowden S.J., Cooper A., and Perham R.N. Thermodynamic analysis of the binding of component enzymes in the assembly of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Protein Sci. 11 (2002) 1091-1100
    • (2002) Protein Sci. , vol.11 , pp. 1091-1100
    • Jung, H.-I.1    Bowden, S.J.2    Cooper, A.3    Perham, R.N.4
  • 22
    • 11844278306 scopus 로고    scopus 로고
    • Interaction of the E2 and E3 components of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Use of a truncated domain in NMR spectroscopy
    • Allen M.D., Broadhurst W., Solomon R.G., and Perham R.N. Interaction of the E2 and E3 components of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. Use of a truncated domain in NMR spectroscopy. FEBS J. 272 (2005) 259-268
    • (2005) FEBS J. , vol.272 , pp. 259-268
    • Allen, M.D.1    Broadhurst, W.2    Solomon, R.G.3    Perham, R.N.4
  • 23
    • 0034645769 scopus 로고    scopus 로고
    • Structural determinants of post-translational modification and catalytic specificity for the lipoyl domains of the pyruvate dehydrogenase multienzyme complex of Escherichia coli
    • Jones D.D., Horne H.J., Reche P.A., and Perham R.N. Structural determinants of post-translational modification and catalytic specificity for the lipoyl domains of the pyruvate dehydrogenase multienzyme complex of Escherichia coli. J. Mol. Biol. 295 (2000) 289-306
    • (2000) J. Mol. Biol. , vol.295 , pp. 289-306
    • Jones, D.D.1    Horne, H.J.2    Reche, P.A.3    Perham, R.N.4
  • 24
    • 0035808415 scopus 로고    scopus 로고
    • Recognition of the lipoyl domain is the ultimate determinant of substrate channelling in the pyruvate dehydrogenase multienzyme complex
    • Jones D.D., Stott K.M., Reche P.A., and Perham R.N. Recognition of the lipoyl domain is the ultimate determinant of substrate channelling in the pyruvate dehydrogenase multienzyme complex. J. Mol. Biol. 305 (2001) 49-60
    • (2001) J. Mol. Biol. , vol.305 , pp. 49-60
    • Jones, D.D.1    Stott, K.M.2    Reche, P.A.3    Perham, R.N.4
  • 25
    • 0027340272 scopus 로고
    • Three-dimensional structure of the lipoyl domain from Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex
    • Dardel F., Davis A.L., Laue E.D., and Perham R.N. Three-dimensional structure of the lipoyl domain from Bacillus stearothermophilus pyruvate dehydrogenase multienzyme complex. J. Mol. Biol. 229 (1993) 1037-1048
    • (1993) J. Mol. Biol. , vol.229 , pp. 1037-1048
    • Dardel, F.1    Davis, A.L.2    Laue, E.D.3    Perham, R.N.4
  • 26
    • 0027404572 scopus 로고
    • The high-resolution structure of the peripheral subunit-binding domain of dihydrolipoamide acetyltransferase from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus
    • Kalia Y.N., Brocklehurst S.M., Hipps D.S., Appella E., Sakaguchi K., and Perham R.N. The high-resolution structure of the peripheral subunit-binding domain of dihydrolipoamide acetyltransferase from the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus. J. Mol. Biol. 230 (1993) 323-341
    • (1993) J. Mol. Biol. , vol.230 , pp. 323-341
    • Kalia, Y.N.1    Brocklehurst, S.M.2    Hipps, D.S.3    Appella, E.4    Sakaguchi, K.5    Perham, R.N.6
  • 27
    • 33748769253 scopus 로고    scopus 로고
    • Structure of the subunit-binding domain and dynamics of the "di-domain" region from the core of human branched chain α-keto acid dehydrogenase complex
    • Chang C.-F., Chou H.-T., Lin L.-J., Lee S.-J., Chuang J.L., Chuang D.T., and Huang T.-H. Structure of the subunit-binding domain and dynamics of the "di-domain" region from the core of human branched chain α-keto acid dehydrogenase complex. J. Biol. Chem. 281 (2006) 28345-28353
    • (2006) J. Biol. Chem. , vol.281 , pp. 28345-28353
    • Chang, C.-F.1    Chou, H.-T.2    Lin, L.-J.3    Lee, S.-J.4    Chuang, J.L.5    Chuang, D.T.6    Huang, T.-H.7
  • 28
    • 0030584659 scopus 로고    scopus 로고
    • Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase
    • Mande S.S., Sarfaty S., Allen M.D., Perham R.N., and Hol W.G. Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 4 (1996) 277-286
    • (1996) Structure , vol.4 , pp. 277-286
    • Mande, S.S.1    Sarfaty, S.2    Allen, M.D.3    Perham, R.N.4    Hol, W.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.