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Volumn 13, Issue 2, 2007, Pages 120-128

Molecular evolution of Mycobacterium tuberculosis

Author keywords

Evolution; Genetic variation; Molecular clock; Molecular epidemiology; Mycobacterium tuberculosis; Review

Indexed keywords

ISONIAZID;

EID: 33846323576     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2006.01637.x     Document Type: Review
Times cited : (28)

References (40)
  • 1
    • 13244273719 scopus 로고    scopus 로고
    • A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model
    • Devulder G, Perouse de Montclos M, Flandrois J. A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model. Int J Syst Evol Microbiol 2005; 55: 293-302.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 293-302
    • Devulder, G.1    Perouse de Montclos, M.2    Flandrois, J.3
  • 2
    • 9744231340 scopus 로고    scopus 로고
    • Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA recA and rpoB gene sequencing
    • Adekambi T, Drancourt M. Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA recA and rpoB gene sequencing. Int J Syst Evol Microbiol 2004; 54: 2095-2105.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2095-2105
    • Adekambi, T.1    Drancourt, M.2
  • 3
    • 0033039066 scopus 로고    scopus 로고
    • Learning from the genome sequence of Mycobacterium tuberculosis H37Rv
    • Cole S. Learning from the genome sequence of Mycobacterium tuberculosis H37Rv. FEBS Lett 1999; 452: 7-10.
    • (1999) FEBS Lett , vol.452 , pp. 7-10
    • Cole, S.1
  • 4
    • 0037133653 scopus 로고    scopus 로고
    • A new evolutionary scenario for the Mycobacterium tuberculosis complex
    • Brosch R, Gordon S, Marmiesse M et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Natl Acad Sci USA 2002; 99: 3684-3689.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 3684-3689
    • Brosch, R.1    Gordon, S.2    Marmiesse, M.3
  • 5
    • 77951051763 scopus 로고    scopus 로고
    • Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis
    • Gutierrez M, Brisse S, Brosch R et al. Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. PLoS Pathog 2005; 1: 55-61.
    • (2005) PLoS Pathog , vol.1 , pp. 55-61
    • Gutierrez, M.1    Brisse, S.2    Brosch, R.3
  • 6
    • 30744460678 scopus 로고    scopus 로고
    • Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: Insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
    • Filliol I, Motiwala A, Cavatore M et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: Insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 2006; 188: 759-772.
    • (2006) J Bacteriol , vol.188 , pp. 759-772
    • Filliol, I.1    Motiwala, A.2    Cavatore, M.3
  • 7
    • 0030931719 scopus 로고    scopus 로고
    • Restricted gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination
    • Sreevatsan S, Pan X, Stockbauer K et al. Restricted gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination. Proc Natl Acad Sci USA 1997; 94: 9869-9874.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 9869-9874
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.3
  • 8
    • 0029813420 scopus 로고    scopus 로고
    • The minimal cell genome: 'On being the right size'
    • Maniloff J. The minimal cell genome: 'On being the right size'. Proc Natl Acad Sci USA 1996; 93: 10004-10006.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10004-10006
    • Maniloff, J.1
  • 9
    • 33644857994 scopus 로고    scopus 로고
    • Environmental tuning of mutation rates
    • Saint-Ruf C, Matic I. Environmental tuning of mutation rates. Environ Microbiol 2006; 8: 193-199.
    • (2006) Environ Microbiol , vol.8 , pp. 193-199
    • Saint-Ruf, C.1    Matic, I.2
  • 10
    • 2942650309 scopus 로고    scopus 로고
    • Escherichia coli evolution during stationary phase
    • Zinser E, Kolter R. Escherichia coli evolution during stationary phase. Res Microbiol 2004; 155: 326-328.
    • (2004) Res Microbiol , vol.155 , pp. 326-328
    • Zinser, E.1    Kolter, R.2
  • 11
    • 0028024035 scopus 로고
    • Metronidazole is bactericidal to dormant cells of Mycobacterium tuberculosis
    • Wayne L, Sramek H. Metronidazole is bactericidal to dormant cells of Mycobacterium tuberculosis. Antimicrob Agents Chemother 1994; 38: 2054-2058.
    • (1994) Antimicrob Agents Chemother , vol.38 , pp. 2054-2058
    • Wayne, L.1    Sramek, H.2
  • 12
    • 0242353159 scopus 로고    scopus 로고
    • Elements for a theory of molecular evolution
    • Arber W. Elements for a theory of molecular evolution. Gene 2003; 317: 3-11.
    • (2003) Gene , vol.317 , pp. 3-11
    • Arber, W.1
  • 13
    • 3142706519 scopus 로고    scopus 로고
    • IS 6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis
    • Safi H, Barnes P, Lakey D et al. IS 6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis. Mol Microbiol 2004; 52: 999-1012.
    • (2004) Mol Microbiol , vol.52 , pp. 999-1012
    • Safi, H.1    Barnes, P.2    Lakey, D.3
  • 14
    • 0031973901 scopus 로고    scopus 로고
    • The CspA family in Escherichia coli: Multiple gene duplications for stress adaptation
    • Yamanaka K, Fang L, Inouye M. The CspA family in Escherichia coli: multiple gene duplications for stress adaptation. Mol Microbiol 1998; 27: 247-255.
    • (1998) Mol Microbiol , vol.27 , pp. 247-255
    • Yamanaka, K.1    Fang, L.2    Inouye, M.3
  • 15
    • 0028136885 scopus 로고
    • Bacterial gene transfer by natural genetic transformation in the environment
    • Lorenz M, Wackernagel W. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 1994; 58: 563-602.
    • (1994) Microbiol Rev , vol.58 , pp. 563-602
    • Lorenz, M.1    Wackernagel, W.2
  • 16
    • 12244289618 scopus 로고    scopus 로고
    • Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains
    • Gutacker MM, Smoot J, Lux Migliaccio C et al. Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains. Genetics 2002; 162: 1533-1543.
    • (2002) Genetics , vol.162 , pp. 1533-1543
    • Gutacker, M.M.1    Smoot, J.2    Lux Migliaccio, C.3
  • 17
    • 4444240785 scopus 로고    scopus 로고
    • Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis
    • Baker L, Brown T, Maiden M et al. Silent nucleotide polymorphisms and a phylogeny for Mycobacterium tuberculosis. Emerg Infect Dis 2004; 10: 1568-1577.
    • (2004) Emerg Infect Dis , vol.10 , pp. 1568-1577
    • Baker, L.1    Brown, T.2    Maiden, M.3
  • 18
    • 0036777599 scopus 로고    scopus 로고
    • Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
    • Fleischmann R, Alland D, Eisen J et al. Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J Bacteriol 2002; 184: 5479-5490.
    • (2002) J Bacteriol , vol.184 , pp. 5479-5490
    • Fleischmann, R.1    Alland, D.2    Eisen, J.3
  • 19
    • 3042736016 scopus 로고    scopus 로고
    • Multiple rpoB mutants of Mycobacterium tuberculosis and second-order selection
    • Mokrousov I. Multiple rpoB mutants of Mycobacterium tuberculosis and second-order selection. Emerg Infect Dis 2004; 10: 1337-1338.
    • (2004) Emerg Infect Dis , vol.10 , pp. 1337-1338
    • Mokrousov, I.1
  • 20
    • 0032173615 scopus 로고    scopus 로고
    • Comparative mycobacterial genomics
    • Cole ST. Comparative mycobacterial genomics. Curr Opin Microbiol 1998; 1: 567-571.
    • (1998) Curr Opin Microbiol , vol.1 , pp. 567-571
    • Cole, S.T.1
  • 21
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements. Drivers of genome evolution
    • Kazazian HH. Mobile elements. drivers of genome evolution. Science 2004; 303: 1626-1632.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 22
    • 0025063966 scopus 로고
    • IS 6110, an IS-like element of Mycobacterium tuberculosis complex
    • Thierry D, Cave M, Eisenach K et al. IS 6110, an IS-like element of Mycobacterium tuberculosis complex. Nucleic Acids Res 1990; 18: 188.
    • (1990) Nucleic Acids Res , vol.18 , pp. 188
    • Thierry, D.1    Cave, M.2    Eisenach, K.3
  • 23
    • 0028125708 scopus 로고
    • Stability of DNA fingerprint pattern produced with IS 6110 in strains of Mycobacterium tuberculosis
    • Cave M, Eisenach K, Templeton G et al. Stability of DNA fingerprint pattern produced with IS 6110 in strains of Mycobacterium tuberculosis. J Clin Microbiol 1994; 32: 262-266.
    • (1994) J Clin Microbiol , vol.32 , pp. 262-266
    • Cave, M.1    Eisenach, K.2    Templeton, G.3
  • 24
    • 0034811957 scopus 로고    scopus 로고
    • Molecular evolution of Mycobacterium tuberculosis: Phylogenetic reconstruction of clonal expansion
    • Warren R, Richardson M, Sampson S et al. Molecular evolution of Mycobacterium tuberculosis: Phylogenetic reconstruction of clonal expansion. Tuberculosis 2001; 81: 291-302.
    • (2001) Tuberculosis , vol.81 , pp. 291-302
    • Warren, R.1    Richardson, M.2    Sampson, S.3
  • 25
    • 0031427050 scopus 로고    scopus 로고
    • Differences in the prevalence of IS 6110 insertion sites in Mycobacterium tuberculosis strains: Low and high copy number of IS 6110
    • Fomukong N, Beggs M, el Hajj H et al. Differences in the prevalence of IS 6110 insertion sites in Mycobacterium tuberculosis strains: Low and high copy number of IS 6110. Tuber Lung Dis 1997; 78: 109-116.
    • (1997) Tuber Lung Dis , vol.78 , pp. 109-116
    • Fomukong, N.1    Beggs, M.2    el Hajj, H.3
  • 26
    • 0034018329 scopus 로고    scopus 로고
    • Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome
    • Supply P, Mazars E, Lesjean S et al. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol 2000; 36: 762-771.
    • (2000) Mol Microbiol , vol.36 , pp. 762-771
    • Supply, P.1    Mazars, E.2    Lesjean, S.3
  • 27
    • 0031750390 scopus 로고    scopus 로고
    • Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats
    • Frothingham R, Meeker-O'Connell W. Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 1998; 144: 1189-1196.
    • (1998) Microbiology , vol.144 , pp. 1189-1196
    • Frothingham, R.1    Meeker-O'Connell, W.2
  • 28
    • 0035852711 scopus 로고    scopus 로고
    • High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology
    • Mazars E, Lesjean S, Banuls A et al. High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology. Proc Natl Acad Sci USA 2001; 98: 1901-1906.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1901-1906
    • Mazars, E.1    Lesjean, S.2    Banuls, A.3
  • 29
    • 4544246531 scopus 로고    scopus 로고
    • Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validate the clonal structure of spoligotyping-defined families
    • Ferdinand S, Valetudie G, Sola C et al. Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validate the clonal structure of spoligotyping-defined families. Res Microbiol 2004; 155: 647-654.
    • (2004) Res Microbiol , vol.155 , pp. 647-654
    • Ferdinand, S.1    Valetudie, G.2    Sola, C.3
  • 30
    • 33644821396 scopus 로고    scopus 로고
    • Evolution of short sequence repeats in Mycobacterium tuberculosis
    • Arnold C, Thorne N, Underwood A et al. Evolution of short sequence repeats in Mycobacterium tuberculosis. FEMS Microbiol Lett 2006; 256: 340-346.
    • (2006) FEMS Microbiol Lett , vol.256 , pp. 340-346
    • Arnold, C.1    Thorne, N.2    Underwood, A.3
  • 31
    • 0033288057 scopus 로고    scopus 로고
    • Reconstructing the duplication history of a tandem repeat
    • Benson G, Dong L. Reconstructing the duplication history of a tandem repeat. Proc Int Conf Intell Syst Mol Biol 1999; 44-53.
    • (1999) Proc Int Conf Intell Syst Mol Biol , pp. 44-53
    • Benson, G.1    Dong, L.2
  • 32
    • 33646227714 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis complex genetic diversity: Mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
    • Brudey K, Driscoll J, Rigouts L et al. Mycobacterium tuberculosis complex genetic diversity: Mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol 2006; 6: 23.
    • (2006) BMC Microbiol , vol.6 , pp. 23
    • Brudey, K.1    Driscoll, J.2    Rigouts, L.3
  • 33
    • 0034000319 scopus 로고    scopus 로고
    • Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria
    • van Embden JDA, van Gorkom T, Kremer K et al. Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria. J Bacteriol 2000; 182: 2393-2401.
    • (2000) J Bacteriol , vol.182 , pp. 2393-2401
    • van Embden, J.D.A.1    van Gorkom, T.2    Kremer, K.3
  • 34
    • 1242314285 scopus 로고    scopus 로고
    • Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain
    • Banu S, Gordon SV, Palmer S et al. Genotypic analysis of Mycobacterium tuberculosis in Bangladesh and prevalence of the Beijing strain. J Clin Microbiol 2004; 42: 674-682.
    • (2004) J Clin Microbiol , vol.42 , pp. 674-682
    • Banu, S.1    Gordon, S.V.2    Palmer, S.3
  • 35
    • 8644255885 scopus 로고    scopus 로고
    • Characterisation of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy
    • Sun Y-J, Lee ASG, Ng ST et al. Characterisation of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy. J Clin Microbiol 2004; 42: 5058-5064.
    • (2004) J Clin Microbiol , vol.42 , pp. 5058-5064
    • Sun, Y.-J.1    Lee, A.S.G.2    Ng, S.T.3
  • 36
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson G, Gutman G. Slipped-strand mispairing: A major mechanism for DNA sequence evolution. Mol Biol Evol 1987; 4: 203-221.
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.2
  • 37
    • 0031899252 scopus 로고    scopus 로고
    • IS 6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains
    • Fang Z, Morrison N, Watt B et al. IS 6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains. J Bacteriol 1998; 180: 2102-2109.
    • (1998) J Bacteriol , vol.180 , pp. 2102-2109
    • Fang, Z.1    Morrison, N.2    Watt, B.3
  • 38
    • 11844262733 scopus 로고    scopus 로고
    • Use of variable-number tandem-repeat typing to differentiate Mycobacterium tuberculosis Beijing family isolates from Hong Kong and comparison with IS 6110 restriction fragment length polymorphism typing and spoligotyping
    • Kremer K, Au B, Yip P et al. Use of variable-number tandem-repeat typing to differentiate Mycobacterium tuberculosis Beijing family isolates from Hong Kong and comparison with IS 6110 restriction fragment length polymorphism typing and spoligotyping. J Clin Microbiol 2005; 43: 314-320.
    • (2005) J Clin Microbiol , vol.43 , pp. 314-320
    • Kremer, K.1    Au, B.2    Yip, P.3
  • 39
    • 12244277890 scopus 로고    scopus 로고
    • Characterisation of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping
    • Zink A, Sola C, Reischl U et al. Characterisation of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping. J Clin Microbiol 2003; 41: 359-367.
    • (2003) J Clin Microbiol , vol.41 , pp. 359-367
    • Zink, A.1    Sola, C.2    Reischl, U.3
  • 40
    • 0034927886 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present
    • Rothschild B, Martin L, Lev G et al. Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present. Clin Inf Dis 2001; 33: 305-311.
    • (2001) Clin Inf Dis , vol.33 , pp. 305-311
    • Rothschild, B.1    Martin, L.2    Lev, G.3


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