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Volumn 1, Issue 1, 2005, Pages 0055-0061

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

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EID: 77951051763     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.0010005     Document Type: Article
Times cited : (439)

References (43)
  • 1
    • 0033598784 scopus 로고    scopus 로고
    • Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
    • Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, et al. (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 96: 14043-14048.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 14043-14048
    • Achtman, M.1    Zurth, K.2    Morelli, G.3    Torrea, G.4    Guiyoule, A.5
  • 2
    • 3242881003 scopus 로고    scopus 로고
    • Exploring the concept of clonality in bacteria
    • Spratt BG (2004) Exploring the concept of clonality in bacteria. Methods Mol Biol 266: 323-352.
    • (2004) Methods Mol Biol , vol.266 , pp. 323-352
    • Spratt, B.G.1
  • 3
    • 0034076598 scopus 로고    scopus 로고
    • High-throughput sequencing in the population analysis of bacterial pathogens of humans
    • Maiden MC (2000) High-throughput sequencing in the population analysis of bacterial pathogens of humans. Int J Med Microbiol 290: 183-190.
    • (2000) Int J Med Microbiol , vol.290 , pp. 183-190
    • Maiden, M.C.1
  • 4
    • 0034769889 scopus 로고    scopus 로고
    • Recombination and the population structures of bacterial pathogens
    • Feil EJ, Spratt BG (2001) Recombination and the population structures of bacterial pathogens. Annu Rev Microbiol 55: 561-590.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 561-590
    • Feil, E.J.1    Spratt, B.G.2
  • 5
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys T, Nakamura LK, Cohan FM (1997) Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data. Int J Syst Bacteriol 47: 1145-1156. (Pubitemid 27441246)
    • (1997) International Journal of Systematic Bacteriology , vol.47 , Issue.4 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 6
    • 0036792524 scopus 로고    scopus 로고
    • Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old
    • Kidgell C, Reichard U, Wain J, Linz B, Torpdahl M, et al. (2002) Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old. Infect Genet Evol 2: 39-45.
    • (2002) Infect Genet Evol , vol.2 , pp. 39-45
    • Kidgell, C.1    Reichard, U.2    Wain, J.3    Linz, B.4    Torpdahl, M.5
  • 8
    • 12244289618 scopus 로고    scopus 로고
    • Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains
    • Gutacker MM, Smoot JC, Migliaccio CA, Ricklefs SM, Hua S, et al. (2002) Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: Resolution of genetic relationships among closely related microbial strains. Genetics 162: 1533-1543.
    • (2002) Genetics , vol.162 , pp. 1533-1543
    • Gutacker, M.M.1    Smoot, J.C.2    Migliaccio, C.A.3    Ricklefs, S.M.4    Hua, S.5
  • 9
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, et al. (1998) Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1    Brosch, R.2    Parkhill, J.3    Garnier, T.4    Churcher, C.5
  • 10
    • 0036777599 scopus 로고    scopus 로고
    • Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains
    • Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, et al. (2002) Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains. J Bacteriol 184: 5479-5490.
    • (2002) J Bacteriol , vol.184 , pp. 5479-5490
    • Fleischmann, R.D.1    Alland, D.2    Eisen, J.A.3    Carpenter, L.4    White, O.5
  • 11
    • 0036847772 scopus 로고    scopus 로고
    • Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis
    • Hughes AL, Friedman R, Murray M (2002) Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis. Emerg Infect Dis 8: 1342-1346. (Pubitemid 35334711)
    • (2002) Emerging Infectious Diseases , vol.8 , Issue.11 , pp. 1342-1346
    • Hughes, A.L.1    Friedman, R.2    Murray, M.3
  • 17
    • 0030870296 scopus 로고    scopus 로고
    • A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: Characterization of an exceptional isolate from Africa
    • van Soolingen D, Hoogenboezem T, de Haas PE, Hermans PW, Koedam MA, et al. (1997) A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: Characterization of an exceptional isolate from Africa. Int J Syst Bacteriol 47: 1236-1245.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1236-1245
    • Van Soolingen, D.1    Hoogenboezem, T.2    De Haas, P.E.3    Hermans, P.W.4    Koedam, M.A.5
  • 18
    • 3142682256 scopus 로고    scopus 로고
    • High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii"
    • Fabre M, Koeck JL, Le Fleche P, Simon F, Herve V, et al. (2004) High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "M. canettii". J Clin Microbiol 42: 3248-3255.
    • (2004) J Clin Microbiol , vol.42 , pp. 3248-3255
    • Fabre, M.1    Koeck, J.L.2    Le Fleche, P.3    Simon, F.4    Herve, V.5
  • 19
    • 0030911908 scopus 로고    scopus 로고
    • Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
    • Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, et al. (1997) Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 35: 907-914.
    • (1997) J Clin Microbiol , vol.35 , pp. 907-914
    • Kamerbeek, J.1    Schouls, L.2    Kolk, A.3    Van Agterveld, M.4    Van Soolingen, D.5
  • 21
    • 0014876878 scopus 로고
    • Probability distribution of drug-resistant mutants in unselected populations of Mycobacterium tuberculosis
    • David HL (1970) Probability distribution of drug-resistant mutants in unselected populations of Mycobacterium tuberculosis. Appl Microbiol 20: 810-814.
    • (1970) Appl Microbiol , vol.20 , pp. 810-814
    • David, H.L.1
  • 24
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: Analyzing and visualizing evolutionary data
    • Huson DH (1998) SplitsTree: Analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 25
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen DE, Green L (1991) Recombination in Escherichia coli and the definition of biological species. J Bacteriol 173: 7257-7268.
    • (1991) J Bacteriol , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 26
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution
    • Sharp PM (1991) Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution. J Mol Evol 33: 23-33.
    • (1991) J Mol Evol , vol.33 , pp. 23-33
    • Sharp, P.M.1
  • 27
    • 0034750390 scopus 로고    scopus 로고
    • Nucleotide substitution rate estimation in enterobacteria: Approximate and maximum-likelihood methods lead to similar conclusions
    • Smith NG, Eyre-Walker A (2001) Nucleotide substitution rate estimation in enterobacteria: Approximate and maximum-likelihood methods lead to similar conclusions. Mol Biol Evol 18: 2124-2126.
    • (2001) Mol Biol Evol , vol.18 , pp. 2124-2126
    • Smith, N.G.1    Eyre-Walker, A.2
  • 28
    • 0037432740 scopus 로고    scopus 로고
    • Early origin and recent expansion of Plasmodium falciparum
    • Joy DA, Feng X, Mu J, Furuya T, Chotivanich K, et al. (2003) Early origin and recent expansion of Plasmodium falciparum. Science 300: 318-321.
    • (2003) Science , vol.300 , pp. 318-321
    • Joy, D.A.1    Feng, X.2    Mu, J.3    Furuya, T.4    Chotivanich, K.5
  • 31
    • 0037034778 scopus 로고    scopus 로고
    • Out of Africa again and again
    • Templeton A (2002) Out of Africa again and again. Nature 416: 45-51.
    • (2002) Nature , vol.416 , pp. 45-51
    • Templeton, A.1
  • 33
    • 0036671453 scopus 로고    scopus 로고
    • Historical intensity of natural selection for resistance to tuberculosis
    • Lipsitch M, Sousa AO (2002) Historical intensity of natural selection for resistance to tuberculosis. Genetics 161: 1599-1607. (Pubitemid 35014760)
    • (2002) Genetics , vol.161 , Issue.4 , pp. 1599-1607
    • Lipsitch, M.1    Sousa, A.O.2
  • 34
    • 0036467798 scopus 로고    scopus 로고
    • Molecular evidence of endogenous reactivation of Mycobacterium tuberculosis after 33 years of latent infection
    • DOI 10.1086/338342
    • Lillebaek T, Dirksen A, Baess I, Strunge B, Thomsen VO, et al. (2002) Molecular evidence of endogenous reactivation of Mycobacterium tuberculosis after 33 years of latent infection. J Infect Dis 185: 401-404. (Pubitemid 34107256)
    • (2002) Journal of Infectious Diseases , vol.185 , Issue.3 , pp. 401-404
    • Lillebaek, T.1    Dirksen, A.2    Baess, I.3    Strunge, B.4    Thomsen, V.O.5    Andersen, A.B.6
  • 35
    • 0034015936 scopus 로고    scopus 로고
    • Negligible genetic diversity of Mycobacterium tuberculosis host immune system protein targets: Evidence of limited selective pressure
    • Musser JM, Amin A, Ramaswamy S (2000) Negligible genetic diversity of Mycobacterium tuberculosis host immune system protein targets: Evidence of limited selective pressure. Genetics 155: 7-16. (Pubitemid 30257106)
    • (2000) Genetics , vol.155 , Issue.1 , pp. 7-16
    • Musser, J.M.1    Amin, A.2    Ramaswamy, S.3
  • 36
    • 0031789025 scopus 로고    scopus 로고
    • Mycobacterium canettii, the smooth variant of M. tuberculosis, isolated from a Swiss patient exposed in Africa
    • Pfyffer GE, Auckenthaler R, van Embden JD, van Soolingen D (1998) Mycobacterium canettii, the smooth variant of M. tuberculosis, isolated from a Swiss patient exposed in Africa. Emerg Infect Dis 4: 631-634. (Pubitemid 28553688)
    • (1998) Emerging Infectious Diseases , vol.4 , Issue.4 , pp. 631-634
    • Pfyffer, G.E.1    Auckenthaler, R.2    Van Embden, J.D.A.3    Van Soolingen, D.4
  • 37
    • 0034796701 scopus 로고    scopus 로고
    • Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • DOI 10.1128/JCM.39.10.3563-3571.2001
    • Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, et al. (2001) Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J Clin Microbiol 39: 3563-3571. (Pubitemid 32954502)
    • (2001) Journal of Clinical Microbiology , vol.39 , Issue.10 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    Van Soolingen, D.5    Locht, C.6
  • 38
    • 0042956726 scopus 로고    scopus 로고
    • High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing
    • Le Fleche P, Fabre M, Denoeud F, Koeck JL, Vergnaud G (2002) High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiol 2: 37.
    • (2002) BMC Microbiol , vol.2 , pp. 37
    • Le Fleche, P.1    Fabre, M.2    Denoeud, F.3    Koeck, J.L.4    Vergnaud, G.5
  • 39
    • 0031750390 scopus 로고    scopus 로고
    • Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats
    • Frothingham R, Meeker-O'Connell WA (1998) Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats. Microbiology 144: 1189-1196. (Pubitemid 28233822)
    • (1998) Microbiology , vol.144 , Issue.5 , pp. 1189-1196
    • Frothingham, R.1    Meeker-O'Connell, W.A.2
  • 40
    • 0036265922 scopus 로고    scopus 로고
    • Development of variable-number tandem repeat typing of Mycobacterium bovis: Comparison of results with those obtained by using existing exact tandem repeats and spoligotyping
    • DOI 10.1128/JCM.40.6.2126-2133.2002
    • Roring S, Scott A, Brittain D, Walker I, Hewinson G, et al. (2002) Development of variable-number tandem repeat typing of Mycobacterium bovis: Comparison of results with those obtained by using existing exact tandem repeats and spoligotyping. J Clin Microbiol 40: 2126-2133. (Pubitemid 34596396)
    • (2002) Journal of Clinical Microbiology , vol.40 , Issue.6 , pp. 2126-2133
    • Roring, S.1    Scott, A.2    Brittain, D.3    Walker, I.4    Hewinson, G.5    Neill, S.6    Skuce, R.7
  • 41
    • 0346576069 scopus 로고    scopus 로고
    • Mycobacterium: Phenotypic and genotypic identification
    • Murray P, editor. Washington (DC): ASM Press. pp.
    • Vincent V, Brown-Elliot B, Jost K, Wallace R (2003) Mycobacterium: Phenotypic and genotypic identification. In: Murray P, editor. Manual of clinical microbiology. Washington (DC): ASM Press. pp. 560-584
    • (2003) Manual of Clinical Microbiology , pp. 560-584
    • Vincent, V.1    Brown-Elliot, B.2    Jost, K.3    Wallace, R.4
  • 42
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 43
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • DOI 10.1093/bioinformatics/bth490
    • Martin DP, Williamson C, Posada D (2005) RDP2: Recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262. (Pubitemid 40202028)
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3


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