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Volumn 8, Issue 4, 2006, Pages 246-256

Highly polymorphic microsatellite DNA markers for sugarcane germplasm evaluation and variety identity testing

Author keywords

Microsatellite (SSR); Polymorphism information content (PIC); Sugarcane germplasm

Indexed keywords


EID: 33846272344     PISSN: 09721525     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02943564     Document Type: Article
Times cited : (88)

References (40)
  • 1
    • 17444383490 scopus 로고    scopus 로고
    • A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar
    • Aitken, K.S., Jackson, P.A. and McIntyre, C.L. (2005). A combination of AFLP and SSR markers provides extensive map coverage and identification of homo(eo)logous linkage groups in a sugarcane cultivar. Theor. Appl. Genet., 110: 789-801.
    • (2005) Theor. Appl. Genet , vol.110 , pp. 789-801
    • Aitken, K.S.1    Jackson, P.A.2    McIntyre, C.L.3
  • 2
    • 32344447771 scopus 로고    scopus 로고
    • Target Region Amplification Polymorphism (TRAP) for Assessing Genetic Diversity in Sugarcane Germplasm Collections
    • Alwala, S., Suman, A., Arro, J.A., Veremis, J.C. and Kimbeng, C.A. (2006). Target Region Amplification Polymorphism (TRAP) for Assessing Genetic Diversity in Sugarcane Germplasm Collections. Crop Sci., 46: 448-455.
    • (2006) Crop Sci , vol.46 , pp. 448-455
    • Alwala, S.1    Suman, A.2    Arro, J.A.3    Veremis, J.C.4    Kimbeng, C.A.5
  • 3
    • 33846313748 scopus 로고    scopus 로고
    • Besse, P. and McIntyre, C.L. (1996). Molecular markers: Useful tools for sugarcane breeders. In Sugarcane: research towards efficient and sustainable production. J.R. Wilson, D.M. Hogarth, J.A. Campbell and A.L. Garside (Eds), pp57-58.
    • Besse, P. and McIntyre, C.L. (1996). Molecular markers: Useful tools for sugarcane breeders. In Sugarcane: research towards efficient and sustainable production. J.R. Wilson, D.M. Hogarth, J.A. Campbell and A.L. Garside (Eds), pp57-58.
  • 4
    • 0029833763 scopus 로고    scopus 로고
    • Ribosomal DNA variations in Erlanthus, a wild sugarcane relative (Andropogoneae Saccharinae)
    • Besse, P., McIntyre, C.L. and Berding, N. (1996). Ribosomal DNA variations in Erlanthus, a wild sugarcane relative (Andropogoneae Saccharinae). Theor. Appl. Genet., 92: 733-743.
    • (1996) Theor. Appl. Genet , vol.92 , pp. 733-743
    • Besse, P.1    McIntyre, C.L.2    Berding, N.3
  • 5
    • 0032432320 scopus 로고    scopus 로고
    • Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis
    • Besse, P., Taylor G., Carroll, B., Berding, N., Burner, D.M. and McIntyre, C.L. (1998). Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis. Genetica, 104: 143-153.
    • (1998) Genetica , vol.104 , pp. 143-153
    • Besse, P.1    Taylor, G.2    Carroll, B.3    Berding, N.4    Burner, D.M.5    McIntyre, C.L.6
  • 6
    • 33846284657 scopus 로고    scopus 로고
    • Breaux, R.D. and Legendre, B.L. (1983). The USDA Commercial breeding program in Louisiana. Proc. Inter-Amer. Sugar Cane, Sem.: Varieties and Breeding, III: 99-105.
    • Breaux, R.D. and Legendre, B.L. (1983). The USDA Commercial breeding program in Louisiana. Proc. Inter-Amer. Sugar Cane, Sem.: Varieties and Breeding, III: 99-105.
  • 7
    • 1842602696 scopus 로고
    • Sugarcane genome amplification for the subtropics: A twenty year effort
    • Burner, D.M. and Legendre, B.L. (1993). Sugarcane genome amplification for the subtropics: a twenty year effort. Sugar Cane, 5-10.
    • (1993) Sugar Cane , pp. 5-10
    • Burner, D.M.1    Legendre, B.L.2
  • 8
    • 0031009892 scopus 로고    scopus 로고
    • Genetic diversity of New World and Old World Saccharum assessed by RAPD Analysis
    • Burner, D.M., Pan, Y-B and Webster, R.D. (1997). Genetic diversity of New World and Old World Saccharum assessed by RAPD Analysis. Genet. Res. Crop Evol., 44: 235-240.
    • (1997) Genet. Res. Crop Evol , vol.44 , pp. 235-240
    • Burner, D.M.1    Pan, Y.-B.2    Webster, R.D.3
  • 10
    • 0023734473 scopus 로고
    • Novel non-templated nucleotide addition reactions catalyzed by prokaryotic and eukaryotic DNA polymerases
    • Clark, J.M. (1988). Novel non-templated nucleotide addition reactions catalyzed by prokaryotic and eukaryotic DNA polymerases. Nucleic Acids Res., 16: 9677-9686.
    • (1988) Nucleic Acids Res , vol.16 , pp. 9677-9686
    • Clark, J.M.1
  • 11
    • 0034729727 scopus 로고    scopus 로고
    • Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species
    • Cordeiro, G.M., Taylor, G.O. and Henry, R.J. (2000). Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species, Plant Sci. 155: 161-168.
    • (2000) Plant Sci , vol.155 , pp. 161-168
    • Cordeiro, G.M.1    Taylor, G.O.2    Henry, R.J.3
  • 12
    • 1842445897 scopus 로고    scopus 로고
    • Evaluation of microsatellites (Simple Sequence Repeats) as genetic markers in sugarcane
    • Cordeiro, G.M. and Henry, R.J. (2001). Evaluation of microsatellites (Simple Sequence Repeats) as genetic markers in sugarcane. Proc. Intl. Soc. Sugar Cane Technol., 24: 627-629.
    • (2001) Proc. Intl. Soc. Sugar Cane Technol , vol.24 , pp. 627-629
    • Cordeiro, G.M.1    Henry, R.J.2
  • 13
    • 0035026747 scopus 로고    scopus 로고
    • Microsatellite markers from sugarcane (Saccharum sp.) ESTs transferable to Erianthus and sorghum
    • Cordeiro, G.M., Casu, R., McIntyre, C.L., Manners, J.M. and Henry, R.J. (2001). Microsatellite markers from sugarcane (Saccharum sp.) ESTs transferable to Erianthus and sorghum. Plant Sci. 160:1115-1123.
    • (2001) Plant Sci , vol.160 , pp. 1115-1123
    • Cordeiro, G.M.1    Casu, R.2    McIntyre, C.L.3    Manners, J.M.4    Henry, R.J.5
  • 14
    • 0038420046 scopus 로고    scopus 로고
    • Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm
    • Cordeiro, G.M., Pan, Y. B. and Henry, R.J. (2003). Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm. Plant Sci., 165:181-189.
    • (2003) Plant Sci , vol.165 , pp. 181-189
    • Cordeiro, G.M.1    Pan, Y.B.2    Henry, R.J.3
  • 15
    • 0035739815 scopus 로고    scopus 로고
    • Preliminary analysis of microsatellite markers derived from sugarcane expressed sequence tags (ESTs)
    • da Silva, J.A.G. (2001). Preliminary analysis of microsatellite markers derived from sugarcane expressed sequence tags (ESTs). Genet. Mol. Biol. 24(1-4):155-159.
    • (2001) Genet. Mol. Biol , vol.24 , Issue.1-4 , pp. 155-159
    • da Silva, J.A.G.1
  • 16
    • 0001888090 scopus 로고
    • Cytoplasmic diversity in sugar cane revealed by heterologous probes
    • D'Hont, A., Lu, Y.H., Feldmann, P. and Glaszmann, J.C. (1993). Cytoplasmic diversity in sugar cane revealed by heterologous probes. Sugar Cane, 1: 12-15.
    • (1993) Sugar Cane , vol.1 , pp. 12-15
    • D'Hont, A.1    Lu, Y.H.2    Feldmann, P.3    Glaszmann, J.C.4
  • 17
    • 0000505461 scopus 로고
    • Identification and characterisation of sugarcane intergeneric hybrids, Saccharum officinarum x Erianthus arundinaceus, with molecular markers and DNA in situ hybridisation
    • D'Hont, A., Rao, P.S., Feldmann, P., Grivet, L., Islam-Faridi, N., Taylor, P. and Glaszmann, J.C. (1995). Identification and characterisation of sugarcane intergeneric hybrids, Saccharum officinarum x Erianthus arundinaceus, with molecular markers and DNA in situ hybridisation. Theor. Appl. Genet., 91: 320-326.
    • (1995) Theor. Appl. Genet , vol.91 , pp. 320-326
    • D'Hont, A.1    Rao, P.S.2    Feldmann, P.3    Grivet, L.4    Islam-Faridi, N.5    Taylor, P.6    Glaszmann, J.C.7
  • 19
    • 0000712423 scopus 로고
    • Variation of nuclear ribosomal DNA in sugarcane
    • Glaszmann, J.C., Lu, Y.H. and Lanaud, C. (1990). Variation of nuclear ribosomal DNA in sugarcane. J. Genet. Breed., 44:191-198.
    • (1990) J. Genet. Breed , vol.44 , pp. 191-198
    • Glaszmann, J.C.1    Lu, Y.H.2    Lanaud, C.3
  • 20
    • 0029899579 scopus 로고    scopus 로고
    • RFLP mapping in cultivated sugarcane (Saccharum spp.): Genome organization in a highly polyploid and aneuploid interspecific hybrid
    • Grivet, L., D'Hont, A., Roques, D., Feldmann, P., Lanaud, C. and Glaszmann, J.C. (1996). RFLP mapping in cultivated sugarcane (Saccharum spp.): Genome organization in a highly polyploid and aneuploid interspecific hybrid. Genetics, 142: 987-1000.
    • (1996) Genetics , vol.142 , pp. 987-1000
    • Grivet, L.1    D'Hont, A.2    Roques, D.3    Feldmann, P.4    Lanaud, C.5    Glaszmann, J.C.6
  • 21
    • 0000910071 scopus 로고    scopus 로고
    • Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties
    • Harvey, M. and Botha, F.C. (1996). Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties. Euphytica, 89: 257-265.
    • (1996) Euphytica , vol.89 , pp. 257-265
    • Harvey, M.1    Botha, F.C.2
  • 22
    • 1842550459 scopus 로고    scopus 로고
    • Contribution of microsatellites to sugarcane breeding program in Mauritius
    • Jannoo, N., Forget, L. and Dookun, A. (2001). Contribution of microsatellites to sugarcane breeding program in Mauritius. Proc. Intl. Soc. Sugar. Cane Technol., 24: 637-639.
    • (2001) Proc. Intl. Soc. Sugar. Cane Technol , vol.24 , pp. 637-639
    • Jannoo, N.1    Forget, L.2    Dookun, A.3
  • 23
    • 33846266352 scopus 로고    scopus 로고
    • Legendre, B.L. and Breaux, R.D. (1983). The USDA basic sugarcane breeding program in Louisiana. Proc Inter-Amer Sugar Cane Sem: Varieties and Breeding, III: 96-98.
    • Legendre, B.L. and Breaux, R.D. (1983). The USDA basic sugarcane breeding program in Louisiana. Proc Inter-Amer Sugar Cane Sem: Varieties and Breeding, III: 96-98.
  • 24
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G. and Gutman, G.A. (1987). Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol., 4(3):203-221.
    • (1987) Mol. Biol. Evol , vol.4 , Issue.3 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 25
    • 0000513909 scopus 로고    scopus 로고
    • Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato
    • Milbourne, D., Meyer, R., Bradshaw, J.E., Baird, E., Bonar, N., Provan, J., Powell, W. and Waugh, R. (1997). Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Mol. Breed,. 3: 127-136.
    • (1997) Mol. Breed , vol.3 , pp. 127-136
    • Milbourne, D.1    Meyer, R.2    Bradshaw, J.E.3    Baird, E.4    Bonar, N.5    Provan, J.6    Powell, W.7    Waugh, R.8
  • 27
    • 0034469044 scopus 로고    scopus 로고
    • An assessment of the phylogenetic relationship among sugarcane and related taxa based on the nucleotide sequence of 5S rRNA intergenic spacers
    • Pan, Y. B., Burner, D.M. and Legendre, B.L. (2000). An assessment of the phylogenetic relationship among sugarcane and related taxa based on the nucleotide sequence of 5S rRNA intergenic spacers. Genetica, 108: 285-295.
    • (2000) Genetica , vol.108 , pp. 285-295
    • Pan, Y.B.1    Burner, D.M.2    Legendre, B.L.3
  • 28
    • 1842550457 scopus 로고    scopus 로고
    • Developing species-specific DNA markers to assist in sugarcane breeding
    • Pan, Y. B., Burner, D.M. and Wei, Q. (2001). Developing species-specific DNA markers to assist in sugarcane breeding. Proc. Intl. Sugar Cane Technol., 24(11): 337-342.
    • (2001) Proc. Intl. Sugar Cane Technol , vol.24 , Issue.11 , pp. 337-342
    • Pan, Y.B.1    Burner, D.M.2    Wei, Q.3
  • 29
    • 0030955936 scopus 로고    scopus 로고
    • Analysis of primer-derived, non-specific amplification products in RAPD-PCR
    • Pan, Y. B., Burner, D.M., Ehrlich, K.C., Grisham, M.P. and Wei, Q. (1997). Analysis of primer-derived, non-specific amplification products in RAPD-PCR. Bio Techniques, 22(6): 1072-1074.
    • (1997) Bio Techniques , vol.22 , Issue.6 , pp. 1072-1074
    • Pan, Y.B.1    Burner, D.M.2    Ehrlich, K.C.3    Grisham, M.P.4    Wei, Q.5
  • 30
    • 1842498125 scopus 로고    scopus 로고
    • Application of microsatellite and RAPD fingerprints in the Florida sugarcane variety program
    • Pan, Y. B., Miller, J.D., Schnell, R.J., Richard Jr., R.P. and Wei, Q. (2003a). Application of microsatellite and RAPD fingerprints in the Florida sugarcane variety program. Sugar Cane International, 19-28.
    • (2003) Sugar Cane International , pp. 19-28
    • Pan, Y.B.1    Miller, J.D.2    Schnell, R.J.3    Richard Jr., R.P.4    Wei, Q.5
  • 31
    • 1842476297 scopus 로고    scopus 로고
    • Molecular genotyping of sugarcane clones with microsatellite DNA markers
    • Pan, Y. B., Cordeiro, G.M., Richard Jr., E.P. and Henry, R.J. (2003b). Molecular genotyping of sugarcane clones with microsatellite DNA markers. Maydica, 48: 319-329.
    • (2003) Maydica , vol.48 , pp. 319-329
    • Pan, Y.B.1    Cordeiro, G.M.2    Richard Jr., E.P.3    Henry, R.J.4
  • 32
    • 14744274375 scopus 로고    scopus 로고
    • An assessment of the genetic diversity within a collection of Saccharum spontaneum with RAPD-PCR
    • Pan, Y. B., Burner, D.M., Legendre, B.L., Grisham, M.P. and White, W.H. (2004). An assessment of the genetic diversity within a collection of Saccharum spontaneum with RAPD-PCR. Genet. Res. Crop Evol., 51: 895-903.
    • (2004) Genet. Res. Crop Evol , vol.51 , pp. 895-903
    • Pan, Y.B.1    Burner, D.M.2    Legendre, B.L.3    Grisham, M.P.4    White, W.H.5
  • 33
    • 11144273819 scopus 로고    scopus 로고
    • Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats
    • Pinto, L.R., Oliveira, K.M., Ulian, E.C., Garcia, A.A.F. and de Souza, A.P. (2004). Survey in the sugarcane expressed sequence tag database (SUCEST) for simple sequence repeats. Genome, 47: 795-804.
    • (2004) Genome , vol.47 , pp. 795-804
    • Pinto, L.R.1    Oliveira, K.M.2    Ulian, E.C.3    Garcia, A.A.F.4    de Souza, A.P.5
  • 34
    • 0034503180 scopus 로고    scopus 로고
    • Molecular contribution to selection of intergeneric hybrids beween sugarcane and the wild species Erianthus arundinaceus
    • Piperidis, G., Christopher, M.J., Carroll, M.J., Berding, N. and D'Hont, A. (2000). Molecular contribution to selection of intergeneric hybrids beween sugarcane and the wild species Erianthus arundinaceus. Genome, 43:1033-1037.
    • (2000) Genome , vol.43 , pp. 1033-1037
    • Piperidis, G.1    Christopher, M.J.2    Carroll, M.J.3    Berding, N.4    D'Hont, A.5
  • 35
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlotterer, C. and Tautz, D. (1992). Slippage synthesis of simple sequence DNA. Nuc. Acids Res., 20: 211-215.
    • (1992) Nuc. Acids Res , vol.20 , pp. 211-215
    • Schlotterer, C.1    Tautz, D.2
  • 36
    • 1842602689 scopus 로고
    • Progress and problems of intergeneric hybridization in sugarcane breeding
    • Tai, P.Y.P. (1989). Progress and problems of intergeneric hybridization in sugarcane breeding. Proc. Inter-Am Sugar Cane Sem., Vol. I: 391-395.
    • (1989) Proc. Inter-Am Sugar Cane Sem , vol.1 , pp. 391-395
    • Tai, P.Y.P.1
  • 37
    • 14644412131 scopus 로고    scopus 로고
    • World sugarcane variety census - 2000
    • Tew, T.L. (2003). World sugarcane variety census - 2000. Sugar Cane Intl.:12-18.
    • (2003) Sugar Cane Intl , pp. 12-18
    • Tew, T.L.1
  • 38
    • 33846312977 scopus 로고    scopus 로고
    • Tew, T.L., White, W.H., Grisham, M.P., Dufrene Jr., E.O., Garrison, D.D. Veremis, J.C., Pan, Y. B., Richard Jr., E.P., Legendre, B.L. and Miller, J.D. (2003). Registration of 'HoCP 96-540' Sugarcane. Crop Sci. 45: 785-786.
    • Tew, T.L., White, W.H., Grisham, M.P., Dufrene Jr., E.O., Garrison, D.D. Veremis, J.C., Pan, Y. B., Richard Jr., E.P., Legendre, B.L. and Miller, J.D. (2003). Registration of 'HoCP 96-540' Sugarcane. Crop Sci. 45: 785-786.
  • 39
    • 33846302946 scopus 로고    scopus 로고
    • Molecular assessment of the fidelity of sugarcane crosses with high-throughput microsatellite genotyping
    • Tew, T.L. and Pan, Y. B. (2005). Molecular assessment of the fidelity of sugarcane crosses with high-throughput microsatellite genotyping. J. Amer. Soc. Sugar Cane Technol., 25: 119.
    • (2005) J. Amer. Soc. Sugar Cane Technol , vol.25 , pp. 119
    • Tew, T.L.1    Pan, Y.B.2
  • 40
    • 0024582686 scopus 로고
    • Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction
    • Weber, J.L. and May, P.E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396.
    • (1989) Am. J. Hum. Genet , vol.44 , pp. 388-396
    • Weber, J.L.1    May, P.E.2


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