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Volumn 165, Issue 1, 2003, Pages 181-189

Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm

Author keywords

Genetic diversity; Microsatellite; Saccharum; SSR; Sugarcane

Indexed keywords

GENES; GENETIC ENGINEERING; RNA;

EID: 0038420046     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9452(03)00157-2     Document Type: Article
Times cited : (146)

References (48)
  • 1
    • 0001832730 scopus 로고
    • Origin and distribution of Saccharum
    • S.K. Mukherjce, Origin and distribution of Saccharum, Bot. Gaz. 119 (1957) 55-61.
    • (1957) Bot. Gaz. , vol.119 , pp. 55-61
    • Mukherjce, S.K.1
  • 4
    • 0032432320 scopus 로고    scopus 로고
    • Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis
    • P. Besse, G. Taylor, B. Carroll, N. Berding, D. Burner, C.L. McIntrye, Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis, Genetica 104 (1998) 143-153.
    • (1998) Genetica , vol.104 , pp. 143-153
    • Besse, P.1    Taylor, G.2    Carroll, B.3    Berding, N.4    Burner, D.5    McIntrye, C.L.6
  • 5
    • 0031009892 scopus 로고    scopus 로고
    • Genetic diversity of North American and Old World Saccharum assessed by RAPD analysis
    • D.M. Burner, Y.-B. Pan, R.D. Webster, Genetic diversity of North American and Old World Saccharum assessed by RAPD analysis, Genetic Resour. Crop Evol. 44 (1997) 235-240.
    • (1997) Genetic Resour. Crop Evol. , vol.44 , pp. 235-240
    • Burner, D.M.1    Pan, Y.-B.2    Webster, R.D.3
  • 6
    • 0000910071 scopus 로고    scopus 로고
    • Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties
    • M. Harvey, F.C. Botha, Use of PCR-based methodologies for the determination of DNA diversity between Saccharum varieties, Euphytica 89 (1996) 257-265.
    • (1996) Euphytica , vol.89 , pp. 257-265
    • Harvey, M.1    Botha, F.C.2
  • 9
    • 0028253530 scopus 로고
    • Relationships among ancestral species of sugarcane revealed with RFLP using single copy maize nuclear probes
    • Y.H. Lu, A. D'Hont, D.I.T. Walker, P.S. Rao, P. Feldmann, J.C. Glaszmann, Relationships among ancestral species of sugarcane revealed with RFLP using single copy maize nuclear probes, Euphytica 78 (1994) 7-18.
    • (1994) Euphytica , vol.78 , pp. 7-18
    • Lu, Y.H.1    D'Hont, A.2    Walker, D.I.T.3    Rao, P.S.4    Feldmann, P.5    Glaszmann, J.C.6
  • 10
    • 0031431842 scopus 로고    scopus 로고
    • Using genomic slot blot hybridization to assess intergeneric Saccharum x Erianthus hybrids (Andropogoneae-Saccharinae)
    • P. Besse, C.L. Mcintyre, D.M. Burner, C.G. Dealmeida, Using genomic slot blot hybridization to assess intergeneric Saccharum x Erianthus hybrids (Andropogoneae-Saccharinae), Genome 40 (1997) 428-432.
    • (1997) Genome , vol.40 , pp. 428-432
    • Besse, P.1    Mcintyre, C.L.2    Burner, D.M.3    Dealmeida, C.G.4
  • 11
    • 0034469044 scopus 로고    scopus 로고
    • An assessment of the phylogenetic relationship among sugarcane and related taxa based on the nucleotide sequence of 5S rRNA intergenic spacers
    • Y.-B. Pan, D.M. Burner, B.L. Legendre, An assessment of the phylogenetic relationship among sugarcane and related taxa based on the nucleotide sequence of 5S rRNA intergenic spacers, Genetica 108 (2000) 285-295.
    • (2000) Genetica , vol.108 , pp. 285-295
    • Pan, Y.-B.1    Burner, D.M.2    Legendre, B.L.3
  • 15
    • 0034142064 scopus 로고    scopus 로고
    • Microsatellite analysis reveals substantial genetic differentiation between contemporary New World and Old World Holstein Friesian populations
    • S. Hanslik, B. Harr, C. Brem, C. Schlotterer, Microsatellite analysis reveals substantial genetic differentiation between contemporary New World and Old World Holstein Friesian populations, Anim. Genet. 31 (2000) 31-38.
    • (2000) Anim. Genet. , vol.31 , pp. 31-38
    • Hanslik, S.1    Harr, B.2    Brem, C.3    Schlotterer, C.4
  • 17
    • 0035125266 scopus 로고    scopus 로고
    • Genetic diversity among European cultivated spelt revealed by microsatellites
    • P. Bertin, D. Grégoire, S. Massart, D.d. Froidmont, Genetic diversity among European cultivated spelt revealed by microsatellites, Theor. Appl. Genet. 102 (2001) 148-156.
    • (2001) Theor. Appl. Genet. , vol.102 , pp. 148-156
    • Bertin, P.1    Grégoire, D.2    Massart, S.3    Froidmont, D.D.4
  • 18
    • 0034525311 scopus 로고    scopus 로고
    • The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars
    • C.D. Li, B.G. Rossnagel, G.J. Scoles, The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars, Theor. Appl. Genet. 101 (2000) 1259-1268.
    • (2000) Theor. Appl. Genet. , vol.101 , pp. 1259-1268
    • Li, C.D.1    Rossnagel, B.G.2    Scoles, G.J.3
  • 19
    • 0035026747 scopus 로고    scopus 로고
    • Microsatellite markers from sugarcane (Saccharum sp.) ESTs cross transferable to Erianthus and Sorghum
    • G.M. Cordeiro, R. Casu, C.L. McIntyre, J.M. Manners, R.J. Henry, Microsatellite markers from sugarcane (Saccharum sp.) ESTs cross transferable to Erianthus and Sorghum, Plant Sci. 160 (2001) 1115-1123.
    • (2001) Plant Sci. , vol.160 , pp. 1115-1123
    • Cordeiro, G.M.1    Casu, R.2    McIntyre, C.L.3    Manners, J.M.4    Henry, R.J.5
  • 21
    • 0034729727 scopus 로고    scopus 로고
    • Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species
    • G.M. Cordeiro, G.O. Taylor, R.J. Henry, Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species, Plant Sci. 155 (2000) 161-168.
    • (2000) Plant Sci. , vol.155 , pp. 161-168
    • Cordeiro, G.M.1    Taylor, G.O.2    Henry, R.J.3
  • 22
    • 0025953476 scopus 로고
    • Genetic analysis of nuclear DNA restriction patterns
    • E.M. Gillet, Genetic analysis of nuclear DNA restriction patterns, Genome 34 (1991) 693-703.
    • (1991) Genome , vol.34 , pp. 693-703
    • Gillet, E.M.1
  • 24
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • M. Nei, W.H. Li, Mathematical model for studying genetic variation in terms of restriction endonucleases, Proc. Natl. Acad. Sci. USA 76 (1979) 5269-5273.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 25
    • 0000250265 scopus 로고
    • Measures of the amount of ecologic association between species
    • L.R. Dice, Measures of the amount of ecologic association between species, Ecology 26 (1945) 297-302.
    • (1945) Ecology , vol.26 , pp. 297-302
    • Dice, L.R.1
  • 27
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • D. Botstein, R.L. White, M. Skolnick, R.W. Davis, Construction of a genetic linkage map in man using restriction fragment length polymorphisms, Am. J. Hum. Genet. 32 (1980) 314-331.
    • (1980) Am. J. Hum. Genet. , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 28
    • 0027729359 scopus 로고
    • DNA polymerase-catalyzed addition of nontemplated extra nucleotide to the 3′ end of a DNA fragment
    • G. Hu, DNA polymerase-catalyzed addition of nontemplated extra nucleotide to the 3′ end of a DNA fragment, DNA Cell Biol. 12 (1993) 763-770.
    • (1993) DNA Cell Biol. , vol.12 , pp. 763-770
    • Hu, G.1
  • 29
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • C. Schlotterer, D. Tautz, Slippage synthesis of simple sequence DNA, Nucl. Acids Res. 20 (1992) 211-215.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 211-215
    • Schlotterer, C.1    Tautz, D.2
  • 30
    • 0001811125 scopus 로고    scopus 로고
    • Using microsatellites to measure the fitness consequences of inbreeding and outbreeding
    • D.B. Goldstein, C. Schlotterer (Eds.), Oxford University Press, New York
    • J.M. Pemberton, D.W. Coltman, T.N. Coulson, J. Slate, Using microsatellites to measure the fitness consequences of inbreeding and outbreeding, in: D.B. Goldstein, C. Schlotterer (Eds.), Microsatellite Evolution and Applications, Oxford University Press, New York, 1999, pp. 151-164.
    • (1999) Microsatellite Evolution and Applications , pp. 151-164
    • Pemberton, J.M.1    Coltman, D.W.2    Coulson, T.N.3    Slate, J.4
  • 34
    • 0028190059 scopus 로고
    • Cytological studies on North American species of Saccharum (Poaceae: Andropogoneae)
    • D.M. Burner, R.D. Webster, Cytological studies on North American species of Saccharum (Poaceae: Andropogoneae), SIDA 16 (1994) 233-244.
    • (1994) SIDA , vol.16 , pp. 233-244
    • Burner, D.M.1    Webster, R.D.2
  • 35
    • 0028855333 scopus 로고
    • Taxonomy of the native North American species of Saccharum (Poaceae: Andropogoneae)
    • R.D. Webster, R.B. Shaw, Taxonomy of the native North American species of Saccharum (Poaceae: Andropogoneae), SIDA 16 (1995) 551-580.
    • (1995) SIDA , vol.16 , pp. 551-580
    • Webster, R.D.1    Shaw, R.B.2
  • 36
    • 0004183824 scopus 로고
    • Genera Graminum, Grasses of the World
    • Royal Botanical Gardens, Kew, Her Majesty's Stationery Office, London
    • W.D. Clayton, S.A. Renvoize, Genera Graminum, Grasses of the World, in: Kew Bulletin Additional Series XIII. Royal Botanical Gardens, Kew, Her Majesty's Stationery Office, London, 1986.
    • (1986) Kew Bulletin Additional Series , vol.13
    • Clayton, W.D.1    Renvoize, S.A.2
  • 37
    • 84973496335 scopus 로고
    • Taxonomy and evolution in sugarcane
    • D.J. Heinz (Ed.), Elsevier Press, Amsterdam
    • J. Daniels, B.T. Roach, Taxonomy and evolution in sugarcane, in: D.J. Heinz (Ed.), Sugarcane Improvement through Breeding, Elsevier Press, Amsterdam, 1987, pp. 7-84.
    • (1987) Sugarcane Improvement through Breeding , pp. 7-84
    • Daniels, J.1    Roach, B.T.2
  • 38
    • 84950355847 scopus 로고
    • Phylogenetic analysis of chloroplast restriction enzyme site mutations in the Saccharinae Grisb. subtribe of the Andropogoneae Dumort. tribe
    • B.W.S. Sobral, D.P.V. Brava, E.S. LaHood, P. Kleim, Phylogenetic analysis of chloroplast restriction enzyme site mutations in the Saccharinae Grisb. subtribe of the Andropogoneae Dumort. tribe, Theor. Appl. Genet. 87 (1994) 843-853.
    • (1994) Theor. Appl. Genet. , vol.87 , pp. 843-853
    • Sobral, B.W.S.1    Brava, D.P.V.2    LaHood, E.S.3    Kleim, P.4
  • 39
    • 0345003788 scopus 로고    scopus 로고
    • Analysis of genetic diversity and phylogeny in Saccharum and related genera using RAPD markers
    • N.V. Nair, S. Nair, T.V. Sreenivasan, M. Mohan, Analysis of genetic diversity and phylogeny in Saccharum and related genera using RAPD markers, Genet. Res. Crop Evol. 46 (1999) 73-79.
    • (1999) Genet. Res. Crop Evol. , vol.46 , pp. 73-79
    • Nair, N.V.1    Nair, S.2    Sreenivasan, T.V.3    Mohan, M.4
  • 40
    • 0003142647 scopus 로고
    • Characterization of genetic variability in Saccharum germplasm by means of restriction fragment length polymorphism (RFLP) analysis
    • W.L. Burnquist, M.E. Sorrelles, S. Tanksley, Characterization of genetic variability in Saccharum germplasm by means of restriction fragment length polymorphism (RFLP) analysis, in: XXI Proceeding of International Society of Sugar Cane Technology, vol. 2, 1995, pp. 355-365.
    • (1995) XXI Proceeding of International Society of Sugar Cane Technology , vol.2 , pp. 355-365
    • Burnquist, W.L.1    Sorrelles, M.E.2    Tanksley, S.3
  • 41
    • 0027974468 scopus 로고
    • Phylogenetic analysis of organellar DNA sequences in the Andropogoneae: Saccharinae
    • S.M. Al-janabi, M. McClelland, C. Petersen, B.W.S. Sobral, Phylogenetic analysis of organellar DNA sequences in the Andropogoneae: Saccharinae, Theor. Appl. Genet. 88 (1994) 933-944.
    • (1994) Theor. Appl. Genet. , vol.88 , pp. 933-944
    • Al-Janabi, S.M.1    McClelland, M.2    Petersen, C.3    Sobral, B.W.S.4
  • 42
    • 0006163115 scopus 로고
    • Cytology of Chinese and North Indian sugarcanes
    • S. Price, Cytology of Chinese and North Indian sugarcanes, Econ. Bot. 22 (1968) 155-164.
    • (1968) Econ. Bot. , vol.22 , pp. 155-164
    • Price, S.1
  • 43
    • 0038450737 scopus 로고    scopus 로고
    • Analysis of cultivars genome structure by molecular cytogenetics and the study of introgression mechanisms
    • Centre de coopération internationale en recherche agronomique pour le développement, Annual Crops Department CIRAD-CA
    • A. D'Hont, M. Layssac, Analysis of cultivars genome structure by molecular cytogenetics and the study of introgression mechanisms, in: Annual Report - Sugarcane Programme, Centre de coopération internationale en recherche agronomique pour le développement, Annual Crops Department CIRAD-CA, 1998, pp. 9-10.
    • (1998) Annual Report - Sugarcane Programme , pp. 9-10
    • D'Hont, A.1    Layssac, M.2
  • 44
    • 0032466347 scopus 로고    scopus 로고
    • Isolation and characterisation of a satellite DNA family in the Saccharum complex
    • K. Alix, F.C. Baurens, F. Paulet, J.C. Glaszmann, A. D'Hont, Isolation and characterisation of a satellite DNA family in the Saccharum complex, Genome 41 (1998) 854-864.
    • (1998) Genome , vol.41 , pp. 854-864
    • Alix, K.1    Baurens, F.C.2    Paulet, F.3    Glaszmann, J.C.4    D'Hont, A.5
  • 45
    • 0032727101 scopus 로고    scopus 로고
    • InterAlu like species-specific sequences in the Saccharum complex
    • K. Alix, F. Paulet, J.C. Glaszmann, A. D'Hont, InterAlu like species-specific sequences in the Saccharum complex, Theor. Appl. Genet. 6 (1999) 854-864.
    • (1999) Theor. Appl. Genet. , vol.6 , pp. 854-864
    • Alix, K.1    Paulet, F.2    Glaszmann, J.C.3    D'Hont, A.4
  • 46
    • 0034503180 scopus 로고    scopus 로고
    • Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus
    • G. Piperidis, M.J. Christopher, B.J. Carroll, N. Berding, A. D'Hont, Molecular contribution to selection of intergeneric hybrids between sugarcane and the wild species Erianthus arundinaceus, Genome 43 (2001) 1033-1037.
    • (2001) Genome , vol.43 , pp. 1033-1037
    • Piperidis, G.1    Christopher, M.J.2    Carroll, B.J.3    Berding, N.4    D'Hont, A.5
  • 47
    • 0030983892 scopus 로고    scopus 로고
    • Launching microsatellites: A review of mutation processes and methods of phylogenetic inference
    • D.B. Goldstein, D.D. Pollock, Launching microsatellites: a review of mutation processes and methods of phylogenetic inference, J. Hered. 88 (1997) 335-342.
    • (1997) J. Hered. , vol.88 , pp. 335-342
    • Goldstein, D.B.1    Pollock, D.D.2
  • 48
    • 0036718239 scopus 로고    scopus 로고
    • Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis
    • A. Estoup, J. Philippe, J.-M. Cornuet, Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis, Mol. Ecol. 11 (2002) 1591-1604.
    • (2002) Mol. Ecol. , vol.11 , pp. 1591-1604
    • Estoup, A.1    Philippe, J.2    Cornuet, J.-M.3


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