Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis

Genetica

Volumn 104, Issue 2, 1998, Pages 143-153

  Besse, P ^a,b   Taylor, G ^c   Carroll, B ^d   Berding, N ^c   Burner, D ^e   McIntyre, C L ^a  

^a CSIRO   (Australia)

^b UNIVERSITÉ DE LA RÉUNION   (France)

^c BSES LIMITED   (Australia)

^d UNIVERSITY OF QUEENSLAND   (Australia)

^e AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

AFLP(TM); Automated analysis; Diversity; GelCompar(TM); Sugarcane

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; GENETIC DIVERSITY; GERMPLASM; NORTH AMERICA;

ERIANTHUS GIGANTEUS; SACCHARUM GIGANTEUM;

EID: 0032432320     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003436403678     Document Type: Article

References (41)

1. Arumuganathan, K. & E.D. Earle, 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
2. Becker, J., P. Vos, M. Kuiper, F. Salamini & M. Heun, 1995. Combined mapping of AFLP and RFLP markers in barley. Mol. Gen. Genet. 249: 65-73.
3. Besse, P., C.L. McIntyre & N. Berding, 1996. Ribosomal DNA variations in Erianthus, a wild sugarcane relative (Andropogoneae-Saccharinae). Theor. Appl. Genet. 92: 733-743.
4. Besse, P., C.L. McIntyre & N. Berding, 1997. Characterisation of Erianthus sect. Ripidium and Saccharum germplasm (Andropogoneae-Saccharinae) using RFLP markers. Euphytica 93: 283-292.
5. Bor, N.L., 1960. The grasses of Burma, Ceylon, India and Pakistan, Pergamon, London.
6. Burner, D.M., 1991. Cytogenetic analysis of sugarcane relatives (Andropogoneae: saccharinae). Euphytica 54: 125-133.
7. Burner, D.M., Y.B. Pan & R.D. Webster, 1997. Genetic diversity of North American and Old World Saccharum assessed by RAPD analysis. Gen. Res. Crop Evol. 44: 235-240.
8. Burner, D.M. & R.D. Webster, 1994. Cytological studies on North American species of Saccharum (Poaceae: Andropogoneae). SIDA 16: 233-244.
9. Clayton, W.D. & S.A. Renvoize, 1986. Genera graminum: Grasses of the World. Kew, London, Royal Botanical Gardens.
10. Daniels, J. & B. Roach, 1987. Taxonomy and evolution, pp. 7-84, in Sugarcane improvement through breeding, edited by D.J. Heinz , Elsevier Press, Amsterdam.
11. Daniels, J., P. Smith, N. Paton & B. Roach, 1975. 2n = 80 S. spontaneum and the origin of sugarcane. Sugarcane Breed. Newsl. 36: 24-39.
12. Dice, L.R., 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
13. Grassl, C.O., 1972. Taxonomy of Saccharum relatives: Sclerostachya, Narenga and Erianthus. Proc. Int. Soc. Sugar Cane Technol., 14: 240-248.
14. Hemmat, M., N.F. Weeden, A.G. Manganaria & D.M. Lawson, 1994. Molecular marker linkage map for apple. J. Hered. 85: 4-11.
15. Hill, M., H. Witsenboer, M. Zabeau, P. Vos, R. Kesseli & R. Michelmore, 1996. PCR-based fingerprinting using AFLPs as a tool for studying genetic relationships in Lactuca spp. Theor. Appl. Genet. 93: 1202-1210.
16. Kandasami, P.A., T.V. Sreenivasan, T.C. Ramana Rao, K. Palanichami, B.V. Natarajan, K.C. Alexander, M. Madhusudana Rao & D. Mohan Raj, 1983. Catalogue on sugarcane genetic resources. 1. Saccharum spontanuem L. Sugarcane Breeding Institute (Indian Council of Agricultural Research), Coimbatore.
17. Karp, A., O. Seberg & M. Buiatti, 1996. Molecular techniques in the assessment of botanical diversity. Ann. Bot. 78: 143-149.
18. Kesseli, R.V., H. Paran & R.W. Michelmore, 1994. Analysis of a detailed genetic linkage map of Lactuca sativa (Lettuce) constructed from RFLP and RAPD markers. Genetics 136: 1435-1446.
19. Lin, J.J., J. Kuo & J. Ma, 1997. Effect of different primer combinations on the resolution of AFLP in plants with small genomes. Focus, 18: 68-69.
20. Lu, J., M.R. Knox, M.J. Ambrose, J.K.M. Brown & T.H.N. Ellis, 1996. Comparative analysis of genetic diversity in pea assessed by RFLP- and PCR-based methods. Theor. Appl. Genet. 93: 1103-1111.
21. Lu, Y.H., A. DíHont, D.I.T. Walker, P.S. Rao, P. Feldman & J.C. Glazsmann, 1994. Relationships among ancestral species of sugarcane revealed with RFLP using single copy maize nuclear probes. Euphytica 78: 7-18.
22. Mackill, D.J., Z. Zhang, E.D. Redona & P.M. Colowit, 1996. Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39: 969-977.
23. Maughan, P.J., M.A. Saghai Maroof, G.R. Buss & G.M. Huestis, 1996. Amplified fragment length polymorphism (AFLP) in soybean: species diversity, inheritance, and near isogenic line analysis. Theor. Appl. Genet. 93: 392-401.
24. Meksem, K., D. Leister, J. Peleman, M. Zabeau, F. Salamini & C. Gebhardt, 1995. A high resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers. Mol. Gen. Genet. 249: 74-81.
25. Mohan, N. & T.V. Sreenivasan, 1983. Chromosome number in the genus Erianthus Michx. (Poaceae) of the Indonesian Archipelago. Cell Chrom. Res. 6: 14-16.
26. Nei, M. & W.H. Li, 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76: 5269-5273.
27. Pan, Y.B., D.M. Burner, K.C. Ehrlich, M.P. Grisham & Q. Wei, 1997. Analysis of primer-derived, non-specific amplification products in RAPD-PCR. Biotechniques 22: 1071-1077.
28. Panje, R.R. & C.N. Babu, 1960. Studies in Saccharum spontaneum. Distribution and geographical association of chromosome numbers. Cytologia 25: 152-172.
29. Paul, S., F.N. Wachira, W. Powell & R. Waugh, 1997. Diversity and genetic differentiation among populations of Indian and Kenyan tea (Camellia sinenesis L. Kuntze) revealed by AFLP markers. Theor. Appl. Genet. 94: 255-263.
30. Schondelmaier, J., G. Steinrucken & C. Jung, 1996. Integration of AFLP markers into a linkage map of sugar beet (Beta vulgaris L.). Plant Breed. 115: 231-237.
31. Sensi, E., R. Vignani, W. Rohde & S. Biricolti, 1996. Characterization of genetic biodiversity with Vitisvinifera L. sangiovese and colorino genotypes by AFLP and ISTR DNA marker technology. Vitis 35: 183-188.
32. Sharma, S.K., M.R. Knox & T.H.N. Ellis, 1996. AFLP analysis of the diversity and phylogeny of lens and its comparison with RAPD analysis. Theor. Appl. Genet. 93: 751-758.
33. Sneath, P.H.A. & R.R. Sokal, 1973. Numerical taxonomy, edited by W.H. Freeman, San Francisco.
34. Sreenivasan, T.V. & N.V. Nair, 1991. Catalogue on genetic resources. III. Saccharum officinarum L. Sugarcane Breeding Institute (Indian Council of Agricultural Research), Coimbatore.
35. Thomas, C.M., P. Vos, M. Zabeau, D.A. Jones, K.A. Norcott, B.P. Chadwick & J.D.G. Jones, 1995. Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J. 8: 785-794.
36. Tohme, J., D.O. Gonzalez, S. Beebe & M.C. Duque, 1996. AFLP analysis of gene pools of a wild bean core collection. Crop Sci. 36: 1375-1384.
37. Van Eck, H.J., J.R. van der Voort, J. Draaistra, P. van Zandvoort, E. van Enckevort, B. Segers, J. Peleman, E. Jacobsen, J. Halder & J. Bakker, 1995. The inheritance and chromosomal localization of AFL P markers in a non-inbred potato offspring. Mol. Breed. 1: 397-410.
38. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. Van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeau, 1995. AFLP: a new technique for DNA fingerprinting. Nucl. Acids Res. 23: 4407-4414.
39. Wang, Z.Y. & S.D. Tanksley, 1989. Restriction fragment polymorphism in Oryza sativa L., Genome 32: 1113-1118.
40. Ward, 1963. J. Am Stat. Assoc. 58: 236-244.
41. Webster, R.D. & R.B. Shaw, 1995. Taxonomy of the native North American species of Saccharum (Poaceae: Andropogoneae). SIDA 16: 551-580.