An assessment of the phylogenetic relationship among sugarcane and related taxa based on the nucleotide sequence of 5S rRNA intergenic spacers

Genetica

Volumn 108, Issue 3, 2000, Pages 285-295

  Pan, Y B ^a   Burner, D M ^b   Legendre, B L ^a  

^a SOUTHERN REGIONAL RESEARCH CENTER   (United States)

^b DALE BUMPERS SMALL FARMS RESEARCH CENTER   (United States)

Author keywords

5S rRNA; Multiple sequence alignment; PCR; Saccharum complex; Sugarcane

Indexed keywords

COMPUTER PROGRAM; CONSENSUS SEQUENCE; CROSS HYBRIDIZATION; CULTIVAR; GENETIC RELATIONSHIP; INTERGENIC SPACER; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT BREEDING; PLASMID VECTOR; POLYMERASE CHAIN REACTION; RIBOSOME RNA; SOUTHERN BLOTTING; ZEA MAYS;

BASE SEQUENCE; DNA PRIMERS; DNA, INTERGENIC; DNA, PLANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; POACEAE; RNA, PLANT; RNA, RIBOSOMAL, 5S; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EMBRYOPHYTA; ERIANTHUS; MISCANTHUS SINENSIS; SACCHARUM; SACCHARUM GIGANTEUM; SACCHARUM HYBRID CULTIVAR; SACCHARUM OFFICINARUM; SACCHARUM SP.; SACCHARUM SPONTANEUM; SORGHUM BICOLOR; ZEA MAYS;

EID: 0034469044     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1004191625603     Document Type: Article

References (37)

1. Molecular and chromosomal organization of DNA sequences for the ribosomal RNAs in cereals
2. Germplasm collection, maintenance, and use
3. Ribosomal DNA variations in Erianthus, a wild sugarcane relative (Andropogoneae-Saccharinae)
4. Assessing genetic diversity in a sugarcane germplasm collection using an automated AFLP analysis
5. A cytological investigation of some species and species-hybrids of the genus Saccharum
6. Cytogenetic analyses of sugarcane relatives in the subtribe Saccharinae
7. Chromosome transmission and meiotic behavior in various sugarcane crosses
8. Cytological studies on North American species of Saccharum (Poaceae: Andropogoneae)
9. Genetic diversity of new world and old world Saccharum assessed by RAPD analysis
10. Use of the polymerase chain reaction to detect spacer size heterogeneity in plant 5S-rRNA gene clusters and to locate such clusters in wheat (Triticum aestivum L.)
11. Polymorphism and concerted evolution in a tandemly repeated family: 5S ribosomal DNA in diploid and allopolyploid cotton
12. Taxonomy and evolution
13. Cytoplasmic diversity in sugar cane revealed by heterologous probes
14. Identification and characterisation of sugarcane intergeneric hybrids, Saccharum officinarum X Erianthus arundinaceus, with molecular markers and DNA in situ hybridisation
15. Determination of basic chromosome numbers in the genus Saccharum by physical mapping of ribosomal RNA genes
16. Organisation and evolution of the 5S ribosomal RNA gene family in wheat and related species
17. Molecular genetic markers in sugarcane
18. Variation of nuclear ribosomal DNA in sugarcane
19. Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae)
20. A package for performing multiple sequence alignment on a microcomputer
21. Intraspecific and interspecific variation in 5S RNA genes are decoupled in diploid wheat relatives
22. Registration of 'LCP 85-384' sugarcane
23. Chromosome number in the genus Erianthus, Michx (Poaceae) of Indonesian Archipelago
24. Physical mapping of the 5S rRNA multigene family in common wheat
25. Origin and distribution of Saccharum
26. Cytological studies of African cultivated rice, Oryza glaberrima
27. A polymerase chain reaction protocol for the detection of Xanthomonas albilineans, the causal agent of sugarcane leaf scald disease
28. Studies in Saccharum spontaneum. Distribution and geographical association of chromosome numbers
29. Interspecific hybridisation in sugarcane breeding
30. The neighbor-joining method: A new method for reconstructing phylogenetic trees
31. Physical mapping of the 5S rDNA gene complex in rice (Oryza sativa)
32. Genomic organization of the ribosomal DNA of sorghum and its close relatives
33. Cytogenetics
34. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
35. Rapid similarity searches of nucleic acid and protein data banks