Ubiquitination in abscisic acid-related pathway

Journal of Integrative Plant Biology

Volumn 49, Issue 1, 2007, Pages 87-93

  Zhang, Yi Yue ^a,b   Xie, Qi ^a  

^a INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

ABA; E3 ligase; Proteolysis; SUMO; Ubiquitin conjugating enzyme (E2); Ubiquitination

Indexed keywords

ABSCISIC ACID; EUKARYOTE; GENETIC ANALYSIS; GENOMICS;

ARABIDOPSIS; EUKARYOTA;

EID: 33846080477     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2006.00417.x     Document Type: Review

References (74)

1. Broomfield S, Chow BL, Xiao W (1998). MMS2, encoding a ubiquitin-conjugating-enzyme-like protein, is a member of the yeast error-free postreplication repair pathway. Proc Natl Acad Sci USA 95, 5678-5683.
2. Callis J, Vierstra RD (2000). Protein degradation in signaling. Curr Opin Plant Biol 3, 381-386.
3. Chen L, Madura K (2002). Rad23 promotes the targeting of pro-teolytic substrates to the proteasome. Mol Cell Biol 22, 4902-4913.
4. Choi H, Hong J, Ha J, Kang J, Kim SY (2000). ABFs, a family of ABA-responsive element binding factors. J Biol Chem 275, 1723-1730.
5. Coscoy L, Ganem D (2003). PHD domains and E3 ubiquitin ligases: Viruses make the connection. Trends Cell Biol 13, 7-12.
6. Criqui MC, De Almeida Engler J, Camasses A, Capron A, Parmentier Y, Inze D et al. (2002). Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. Plant Physiol 130, 1230-1240.
7. Davies PJ (1995). Plant Hormones: Physiology, Biochemistry, and Molecular Biology. Kluwer Academic Publishers, London. pp. 1-12.
8. Desterro JM, Rodriguez MS, Hay RT (1998). SUMO-1 modification of IkappaBalpha inhibits NF-kappaB activation. Mol Cell 2, 233-239.
9. Feussner K, Feussner I, Leopold I, Wasternack C (1997). Isolation of a cDNA coding for an ubiquitin-conjugating enzyme UBC1 of tomato - the first stress-induced UBC of higher plants. FEBS Lett 409, 211-215.
10. Finkelstein RR, Rock CD (2002). Abscisic acid biosynthesis and response. In: Somerville CR, Meyerowitz ZM, eds. The Arabidopsis Book. American Society of Plant Biologists, Rockville. pp. 1-48.
11. Finkelstein RR, Lynch TJ (2000). The Arabidopsis abscisic acid response gene AB15 encodes a basic leucine zipper transcription factor. Plant Cell 12, 599-609.
12. Garbers C, DeLong A, Deruere J, Bernasconi P, Soll D (1996). A mutation in protein phosphatase 2A regulatory subunit A affects auxin transport in Arabidopsis. Embo J 15, 2115-2124.
13. Glickman MH, Ciechanover A (2002). The ubiquitin-proteasome proteolytic pathway: Destruction for the sake of construction. Physiol Rev 82, 373-428.
14. Hatakeyama S, Yada M, Matsumoto M, Ishida N, Nakayama KI (2001). U box proteins as a new family of ubiquitin-protein ligases. J Biol Chem 276, 33111-33120.
15. Hershko A, Ciechanover A (1998). The ubiquitin system. Annu Rev Biochem 67, 425-479.
16. Hochstrasser M (2002). New structural clues to substrate specificity in the "ubiquitin system". Mol Cell 9, 453-454.
17. Hoege C, Pfander B, Moldovan GL, Pyrowolakis G, Jentsch S (2002). RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO. Nature 419, 135-141.
18. Hofmann K, Falquet L (2001). A ubiquitin-interacting motif conserved in components of the proteasomal and lysosomal protein degradation systems. Trends Biochem Sci 26, 347-350.
19. Hoth S, Morgante M, Sanchez JP, Hanafey MK, Tingey SV, Chua NH (2002). Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant. J Cell Sci 115, 4891-4900.
20. Ichimura Y, Kirisako T, Takao T, Satomi Y, Shimonishi Y, Ishihara N et al. (2000). A ubiquitin-like system mediates protein lipidation. Nature 408, 488-492.
21. Ko JH, Yang SH, Han KH (2006). Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. Plant J 47, 343-355.
22. Kobayashi Y, Murata M, Minami H, Yamamoto S, Kagaya Y, Hobo T et al (2005). Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduc-tion by phosphorylating ABA response element-binding factors. Plant J 44, 939-949.
23. Kraft E, Stone SL, Ma L, Su N, Gao Y, Lau OS et al (2005). Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol 139, 1597-1611.
24. Kuhn JM, Boisson-Dernier A, Dizon MB, Maktabi MH, Schroeder JI (2006). The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA. Plant Physiol 140, 127-139.
25. Kurepa J, Walker JM, Smalle J, Gosink MM, Davis SJ, Durham TL et al (2003). The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis. Accumulation of SUMO1 and -2 conjugates is increased by stress. J Biol Chem 278, 6862-6872.
26. Kwak JM, Moon JH, Murata Y, Kuchitsu K, Leonhardt N, Delong A et al (2002). Disruption of a guard cell-expressed protein phosphatase 2A regulatory subunit, RCN1, confers abscisic acid in-sensitivity in Arabidopsis. Plant Cell 14, 2849-2861.
27. Lai CP, Lee CL, Chen PH, Wu SH, Yang CC, Shaw JF (2004). Molecular analyses of the Arabidopsis TUBBY-like protein gene family. Plant Physiol 134, 1586-1597.
28. Larsen PB, Cancel JD (2003). Enhanced ethylene responsiveness in the Arabidopsis eer1 mutant results from a loss-of-function mutation in the protein phosphatase 2A A regulatory subunit, RCN1. Plant J 34, 709-718.
29. Leonhardt N, Kwak JM, Robert N, Waner D, Leonhardt G, Schroeder JI (2004). Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. Plant Cell 16, 596-615.
30. Leung J, Giraudat J (1998). Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 49, 199-222.
31. Lois LM, Lima CD, Chua NH (2003). Small ubiquitin-like modifier modulates abscisic acid signaling in Arabidopsis. Plant Cell 15, 1347-1359.
32. Lopez-Molina L, Chua NH (2000). A null mutation in a bZIP factor confers ABA-insensitivity in Arabidopsis thaliana. Plant Cell Physiol 41, 541-547.
33. Lopez-Molina L, Mongrand S, Chua NH (2001). A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis. Proc Natl Acad Sci USA 98, 4782-4787.
34. Lopez-Molina L, Mongrand S, Kinoshita N, Chua NH (2003). AFP is a novel negative regulator of ABA signaling that promotes ABI5 protein degradation. Genes Dev 17, 410-418.
35. Lopez-Molina L, Mongrand S, McLachlin DT, Chait BT, Chua NH (2002). AB15 acts downstream of AB13 to execute an ABA-dependent growth arrest during germination. Plant J 32, 317-328.
36. Lorick KL, Jensen JP, Fang S, Ong AM, Hatakeyama S, Weissman AM (1999). RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci USA 96, 11364-11369.
37. Luo J, Shen G, Yan J, He C, Zhang H (2006). AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Plant J 46, 649-657.
38. Madura K (2002). The ubiquitin-associated (UBA) domain: On the path from prudence to prurience. Cell Cycle 1, 235-244.
39. Madura K (2004). Rad23 and Rpn10: Perennial wallflowers join the melee. Trends Biochem Sci 29, 637-640.
40. Moon J, Parry G, Estelle M (2004). The ubiquitin-proteasome pathway and plant development. Plant Cell 16, 3181-3195.
41. Murata S, Minami Y, Minami M, Chiba T, Tanaka K (2001). CHIP is a chaperone-dependent E3 ligase that ubiquitylates unfolded protein. EMBO Rep 2, 1133-1138.
42. Nakamura S, Lynch TJ, Finkelstein RR (2001). Physical interactions between ABA response loci of Arabidopsis. Plant J 26, 627-635.
43. Nambara E, Marion-Poll A (2005). Abscisic acid biosynthesis and catabolism. Annu Rev Plant Biol 56, 165-185.
44. Nambara E, Keith K, McCourt P, Naito S (1994). Isolation of an internal deletion mutant of the Arabidopsis thaliana AB13 gene. Plant Cell Physiol 35, 509-513.
45. Nambara E, Hayama R, Tsuchiya Y, Nishimura M, Kawaide H, Kamiya Y et al (2000). The role of AB13 and FUS3 loci in Arabidopsis thaliana on phase transition from late embryo development to germination. Dev Biol 220, 412-423.
46. Ohi MD, Vander Kooi CW, Rosenberg JA, Chazin WJ, Gould KL (2003). Structural insights into the U-box, a domain associated with multi-ubiquitination. Nat Struct Biol 10, 250-255.
47. Peters JM (1998). SCF and APC: The Yin and Yang of cell cycle regulated proteolysis. Curr Opin Cell Biol 10, 759-768.
48. Pickart CM (2001). Ubiquitin enters the new millennium. Mol Cell 8, 499-504.
49. Rashotte AM, DeLong A, Muday GK (2001). Genetic and chemical reductions in protein phosphatase activity alter auxin transport, gavity response, and lateral root growth. Plant Cell 13, 1683-1697.
50. Rock CD (2000). pathways to abscisic acid-related gene expression. New Phytol 148, 357-396.
51. Rodriguez PL, Leube MP, Grill E (1998). Molecular cloning in Arabidopsis thaliana of a new protein phosphatase 2C (PP2C) with homology to ABI1 and ABI2. Plant Mol Biol 38, 879-883.
52. Salinas-Mondragon RE, Garciduenas-Pina C, Guzman P (1999). Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana. Plant Mol Biol 40, 579-590.
53. Sancho E, Vila MR, Sanchez-Pulido L, Lozano JJ, Paciucci R, Nadal M et al (1998). Role of UEV-1, an inactive variant of the E2 ubiquitin-conjugating enzymes, in in vitro differentiation and cell cycle behavior of HT-29-M6 intestinal mucosecretory cells. Mol Cell Biol 18, 576-589.
54. Schultz TF, Quatrano RS (1997). Characterization and expression of a rice RAD23 gene. Plant Mol Biol 34, 557-562.
55. Seki M, Ishida J, Narusaka M, Fujita M, Nanjo T, Umezawa T et al (2002). Monitoring the expression pattern of around 7 000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray. Funct Integr Genomics 2, 282-291.
56. Serrano M, Guzman P (2004). Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zinc-finger gene. Genetics 167, 919-929.
57. Serrano M, Parra S, Alcaraz LD, Guzman P (2006). The ATL gene family from Arabidopsis thaliana and Oryza sativa comprises a large number of putative ubiquitin ligases of the RING-H2 type. J Mol Evol 62, 434-445.
58. Smalle J, Vierstra RD (2004). The ubiquitin 26S proteasome proteolytic pathway. Annu Rev Plant Biol 55, 555-590.
59. Smalle J, Kurepa J, Yang P, Emborg TJ, Babiychuk E, Kushnir S et al. (2003). The pleiotropic role of the 26S proteasome sub-unit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling. Plant Cell 15, 965-980.
60. Soderman EM, Brocard IM, Lynch TJ, Finkelstein RR (2000). Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks. Plant Physiol 124, 1752-1765.
61. Stone SL, Hauksdottir H, Troy A, Herschleb J, Kraft E, Callis J (2005). Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Plant Physiol 137, 13-30.
62. Tatham MH, Jaffray E, Vaughan OA, Desterro JM, Botting CH, Naismith JH et al. (2001). Polymeric chains of SUMO-2 and SUMO-3 are conjugated to protein substrates by SAE1/SAE2 and Ubc9. J Biol Chem 276, 35368-35374.
63. Teng FY, Tang BL (2005). APC/C regulation of axonal growth and synaptic functions in postmitotic neurons: The Liprin-alpha connection. Cell Mol Life Sci 62, 1571-1578.
64. Thomann A, Dieterle M, Genschik P (2005). Plant CULLIN-based E3s: Phytohormones come first. FEBS Lett 579, 3239-3245.
65. Van Laar T, Van der Eb AJ, Terleth C (2002). A role for Rad23 proteins in 26S proteasome-dependent protein degradation? Mutat Res 499, 53-61.
66. Van Nocker S, Sadis S, Rubin DM, Glickman M, Fu H, Coux O et al. (1996). The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol Cell Biol 16, 6020-6028.
67. Vierstra RD, Callis J (1999). Polypeptide tags, ubiquitous modifiers for plant protein regulation. Plant Mol Biol 41, 435-442.
68. Wen R, Newton L, Li G, Wang H, Xiao W (2006). Arabidopsis thaliana UBC13: Implication of error-free DNA damage tolerance and Lys63-linked polyubiquitylation in plants. Plant Mol Biol 61, 241-253.
69. Wojcik C (2001). Ubiquitin-more than just a signal for protein degradation. Trends Cell Biol 11, 397-399.
70. Yamanaka A, Hatakeyama S, Kominami K, Kitagawa M, Matsumoto M, Nakayama K (2000). Cell cycle-dependent expression of mammalian E2-C regulated by the anaphase-promoting complex/cyclosome. Mol Biol Cell 11, 2821-31.
71. Yeh ET, Gong L, Kamitani T (2000). Ubiquitin-like proteins: New wines in new bottles. Gene 248, 1-14.
72. Zhang X, Garreton V, Chua NH (2005). The AIP2 E3 ligase acts as a novel negative regulator of ABA signaling by promoting ABI3 degradation. Genes Dev 19, 1532-1543.
73. Zhu JK (2002). Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53, 247-273.
74. Zolman BK, Monroe-Augustus M, Silva ID, Bartel B (2005). Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22. Plant Cell 17, 3422-3435.