Molecular analyses of the arabidopsis TUBBY-like protein gene family

Plant Physiology

Volumn 134, Issue 4, 2004, Pages 1586-1597

  Lai, Chia Ping ^a,c   Lee, Chang Lung ^b   Chen, Po Hsuan ^c   Wu, Shu Hsing ^c   Yang, Chien Chih ^a   Shaw, Jei Fu ^b,c  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b NATIONAL YANG MING UNIVERSITY   (Taiwan)

^c INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; GENES; PLANTS (BOTANY); PROTEINS; YEAST;

MUTANTS; SIGNALING PATHWAYS; TRANSGENIC PLANTS;

MOLECULAR BIOLOGY;

ANIMALIA; ARABIDOPSIS; EMBRYOPHYTA; MAMMALIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SPERMATOPHYTA;

EID: 1942469549     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.103.037820     Document Type: Article

References (53)

1. Bai C, Sen P, Hofmann K, Ma L, Goebl M, Harper JW, Elledge SJ (1996) SKP1 connects cell cycle regulators to the ubiquitin proteolysis machinery through a novel motif, the F-box. Cell 86: 263-274
2. Bewley JD (1997) Seed germination and dormancy. Plant Cell 9: 1055-1066
3. Boggon TJ, Shan WS, Santagata S, Myers SC, Shapiro SL (1999) Implication of tubby proteins as transcription factors by structure-based functional analysis. Science 286: 2119-2125
4. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743
5. Coleman DL, Eicher EM (1990) Fat (fat) and tubby (tub): two autosomal recessive mutations causing obesity syndromes in the mouse. J Hered 81: 424-427
6. del Pozo JC, Boniotti MB, Gutierrez C (2002) Arabidopsis E2Fc functions in cell division and is degraded by the ubiquitin-SCF(AtSKP2) pathway in response to light. Plant Cell 14: 3057-3071
7. del Pozo JC, Estelle M (1999) The Arabidopsis cullin AtCUL1 is modified by the ubiquitin-related protein RUB1. Proc Natl Acad Sci USA 96: 15342-15347
8. Dieterle M, Zhou YC, Schafer E, Funk M, Kretsch T (2001) EID1, an F-box protein involved in phytochrome A-specific light signaling. Genes Dev 15: 939-944
9. Farrás R, Ferrando A, Jasik J, Kleinow T, Okresz L, Tiburcio A, Salchert K, del Pozo C, Schell J, Koncz C (2001) SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. EMBO J 20: 2742-2756
10. Finkelstein RR, Gibson SI (2002) ABA and sugar interactions regulating development: cross-talk or voices in a crowd? Curr Opin Plant Biol 5: 26-32
11. Frye CA, Innes RW (1998) An Arabidopsis mutant with enhanced resistance to powdery mildew. Plant Cell 10: 947-956
12. Frye CA, Tang D, Innes RW (2001) Negative regulation of defense responses in plants by a conserved MAPKK kinase. Proc Natl Acad Sci USA 98: 373-378
13. Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD (2002) The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc Natl Acad Sci USA 99: 11519-11524
14. Gray WM, del Pozo JC, Walker L, Hobbie L, Risseeuw E, Banks T, Crosby WL, Yang M, Ma H, Estelle M (1999) Identification of an SCF ubiquitin ligase complex required for auxin response in Arabidopsis thaliana. Genes Dev 13: 1678-1691
15. TIR1-dependent degradation of AUX/IAA proteins. Nature 414: 271-276
16. Heckenlively JR, Chang B, Erway LC, Peng C, Hawes NL, Hageman GS, Roderick TH (1995) Mouse model for usher syndrome: linkage mapping suggests homology to usher type I reported at human chromosome 11p15. Proc Natl Acad Sci USA 92: 11100-11104
17. Huala E, Dickerman AW, Garcia-Hernandez M, Weems D, Reiser L, LaFond F, Hanley D, Kiphart D, Zhuang M, Huang W, et al (2001) The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res 29: 102-105
18. Kleyn PW, Fan W, Kovats SG, Lee JJ, Pulido JC, Wu Y, Berkemeier LR, Misumi DJ, Holmgren L, Charlat O, et al (1996) Identification and characterization of the mouse obesity gene tubby: a member of a novel gene family. Cell 85: 281-290
19. Koornneef M, Reuling G, Karssen CM (1984) The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana. Physiol Plant 61: 377-383
20. Krek W (1998) Proteolysis and the G1-S transition: the SCF connection. Curr Opin Genet Dev 8: 36-42
21. Li QZ, Wang CY, Shi JD, Ruan QG, Eckenrode S, Davoodi-Semiromi A, Kukar T, Gu Y, Lian W, Wu D, et al (2001) Molecular cloning and characterization of the mouse and human TUSP gene, a novel member of the tubby superfamily. Gene 273: 275-284
22. Nelson DC, Lasswell J, Rogg LE, Cohen MA, Bartel B (2000) FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 101: 331-340
23. Nishina PM, North MA, Ikeda A, Yan Y, Naggert JK (1998) Molecular characterization of a novel tubby gene family member, TULP3, in mouse and humans. Genomics 54: 215-220
24. Noben-Trauth K, Naggert JK, North MA, Nishina PM (1996) A candidate gene for the mouse mutation tubby. Nature 380: 534-538
25. North MA, Naggert JK, Yan Y, Noben-Trauth K, Nishina PM (1997) Molecular characterization of TUB, TULP1, and TULP2, members of the novel tubby gene family and their possible relation to ocular diseases. Proc Natl Acad Sci USA 94: 3128-3133
26. Norris SR, Meyer SE, Callis J (1993) The intron of polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression. Plant Mol Biol 21: 895-906
27. Ohlemiller KK, Hughes RM, Mosinger-Ogilvie J, Speck JD, Grosof DH, Silverman MS (1995) Cochlear and retinal degeneration in the tubby mouse. Neuroreport 6: 845-849
28. Pagni M, Iseli C, Junier T, Falquet L, Jongeneel V, Bucher P (2001) TrEST, trGEN and Hits: access to databases of predicted protein sequences. Nucleic Acids Res 29: 148-151
29. Patton EE, Willems AR, Tyers M (1998) Combinatorial control in ubiquitin-dependent proteolysis: Don't Skp the F-box hypothesis. Trends Genet 14: 236-243
30. Pei ZM, Kuchitsu K, Ward JM, Schwarz M, Schroeder JI (1997) Differential abscisic acid regulation of guard cell slow anion channels in Arabidopsis wild-type and abi1 and abi2 mutants. Plant Cell 9: 409-423
31. Pickart CM (2001) Mechanisms underlying ubiquitination. Annu Rev Biochem 70: 503-533
32. Risseeuw EP, Daskalchuk TE, Banks TW, Liu E, Cotelesage J, Hellmann H, Estelle M, Somers DE, Crosby WL (2003) Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Plant J 34: 753-767
33. Rugger M, Dewey E, Gray WM, Hobble L, Turner J, Estelle M (1998) The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast grr1p. Genes Dev 12: 198-207
34. Samach A, Llenz JE, Kohalmi SE, Risseeuw E, Haughn GW, Grosby WL (1999) The UNUSUAL FLORAL ORGANS gene of Arabidopsis thaliana is an F-box protein required for normal patterning and growth in the floral meristem. Plant J 20: 433-445
35. Santagata S, Boggon TJ, Baird CL, Gomez JA, Zhao J, Shan WS, Myszka DG, Shapiro SL (2001) G-protein signaling through tubby proteins. Science 292: 2041-2050
36. Schulman BA, Carrano AC, Jeffrey PD, Bowen Z, Kinnucan ER, Finnin MS, Elledge SJ, Harper JW, Pagano M, Pavletich NP (2000) Insights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex. Nature 408: 381-386
37. Skowyra D, Koepp DM, Kamura T, Conrad MN, Conaway RC, Conaway JW, Elledge SJ, Harper JW (1999) Reconstitution of G1 cyclin ubiquitination with complexes containing SCFGrr1 and Rbx1. Science 284: 662-665
38. Söderman EM, Brocard IM, Lynch TJ, Finkelstein RR (2000) Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks. Plant Physiol 124: 1752-1765
39. Somers DE, Schultz TF, Milnamow M, Kay SA (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101: 319-329
40. Stemmann O, Neidig A, Kocher T, Wilm M, Lechner J (2002) Hsp90 enables Ctf13p/Skp1p to nucleate the budding yeast kinetochore. Proc Natl Acad Sci USA 99: 8585-8590
41. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
42. Vollbrecht E, Veit B, Sinha N, Hake S (1991) The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350: 241-243
43. Winston JT, Strack P, Beer-Romero P, Chu CY, Elledge SJ, Harper JW (1999) The SCFbeta-TRCP-ubiquitin ligase complex associates specifically with phosphorylated destruction motifs in IkappaBalpha and beta-catenin and stimulates IkappaBalpha ubiquitination in vitro. Genes Dev 13: 270-283
44. Woo HR, Chung KM, Park JH, Oh SA, Ahn T, Hong SH, Jang SK, Nam HG (2001) ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell 13: 1779-1790
45. Wu SH, Ramonell K, Gollub J, Somerville SC (2001) Plant gene expression profiling with DNA microarrays. Plant Physiol Biochem 39: 917-926
46. Xiao W, Jang J (2000) F-box proteins in Arabidopsis. Trends Plant Sci 5: 454-457
47. Xie DX, Feys BF, James S, Nieto-Rostro M, Turner JG (1998) COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility. Science 280: 1091-1094
48. COI1 ubiquitin-ligase complexes are required for jasmonate response in Arabidopsis. Plant Cell 14: 1919-1935
49. Yamanaka A, Yada M, Imaki H, Koga M, Ohshima Y, Nakayama KI (2002) Multiple Skp1-related proteins in Caenorhabditis elegans: diverse patterns of interaction with Cullins and F-Box proteins. Curr Biol 12: 267-275
50. Yang M, Hu Y, Lodhi M, McCombie WR, Ma H (1999) The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation. Proc Natl Acad Sci USA 96: 11416-11421
51. Zhao D, Ni W, Feng B, Han T, Petrasek MG, Ma H (2003) Members of the Arabidopsis-SKP1-like gene family exhibit a variety of expression patterns and may play diverse roles in Arabidopsis. Plant Physiol 133: 203-217
52. Zhao D, Yang M, Solava J, Ma H (1999) The ASK1 gene regulates development and interacts with the UFO gene to control floral organ identity in Arabidopsis. Dev Genet 25: 209-223
53. Zheng N, Schulman BA, Song L, Miller JJ, Jeffrey PD, Wang P, Chu C, Koepp DM, Elledge SJ, Pagano M, et al (2002) Structure of the Cul1-Rbx1-Skp1-F box Skp2 SCF ubiquitin ligase complex. Nature 416: 703-709