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Volumn 128, Issue 1, 2007, Pages 125-136

Chaperonomics, a new tool to study ageing and associated diseases

Author keywords

Ageing; Bioinformatics analysis; Chaperonomics; Chaperonopathies; Hsp70; Molecular chaperones

Indexed keywords

CHAPERONE; HEAT SHOCK PROTEIN 70;

EID: 33846039944     PISSN: 00476374     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mad.2006.11.019     Document Type: Article
Times cited : (19)

References (58)
  • 3
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey T.L., and Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2 (1994) 28-36
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 4
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black D.L. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72 (2003) 291-336
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
    • Black, D.L.1
  • 5
    • 0035201828 scopus 로고    scopus 로고
    • Phylogenetic inferences from molecular sequences: review and critique
    • Brocchieri L. Phylogenetic inferences from molecular sequences: review and critique. Theor. Popul. Biol. 59 (2001) 27-40
    • (2001) Theor. Popul. Biol. , vol.59 , pp. 27-40
    • Brocchieri, L.1
  • 6
    • 0032512801 scopus 로고    scopus 로고
    • A symmetric-iterated multiple alignment of protein sequences
    • Brocchieri L., and Karlin S. A symmetric-iterated multiple alignment of protein sequences. J. Mol. Biol. 276 (1998) 249-264
    • (1998) J. Mol. Biol. , vol.276 , pp. 249-264
    • Brocchieri, L.1    Karlin, S.2
  • 7
    • 0000303438 scopus 로고
    • The multiple sequence alignment problem in biology
    • Carrillo H., and Lipman D. The multiple sequence alignment problem in biology. SIAM J. Appl. Math. 48 (1988) 1073-1082
    • (1988) SIAM J. Appl. Math. , vol.48 , pp. 1073-1082
    • Carrillo, H.1    Lipman, D.2
  • 8
    • 28644443855 scopus 로고    scopus 로고
    • The HSP90 family of genes in the human genome: insights into their divergence and evolution
    • Chen B., Piel W.H., Gui L., Bruford E., and Monteiro A. The HSP90 family of genes in the human genome: insights into their divergence and evolution. Genomics 86 (2005) 627-637
    • (2005) Genomics , vol.86 , pp. 627-637
    • Chen, B.1    Piel, W.H.2    Gui, L.3    Bruford, E.4    Monteiro, A.5
  • 9
    • 33846066020 scopus 로고    scopus 로고
    • Dayhoff, M., Schwartz, R., Orcutt, B., 1978. A model of evolutionary change in proteins. In: Dayhoff, M. (Ed.), Atlas of Protein Sequence and Structure, Nat. Biomed. Res. Found. Washington, DC, pp. 345-352.
  • 10
    • 0026668613 scopus 로고
    • MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences
    • Depiereux E., and Feytmans E. MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences. Comput. Appl. Biosci. 8 (1992) 501-509
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 501-509
    • Depiereux, E.1    Feytmans, E.2
  • 13
    • 33646902375 scopus 로고    scopus 로고
    • The effect of aging on the chaperone concentrations in the hepatic, endoplasmic reticulum of male rats: the possible role of protein misfolding due to the loss of chaperones in the decline in physiological function seen with age
    • Erickson R.R., Dunning L.M., and Holtzman J.L. The effect of aging on the chaperone concentrations in the hepatic, endoplasmic reticulum of male rats: the possible role of protein misfolding due to the loss of chaperones in the decline in physiological function seen with age. J. Gerontol. A Biol. Sci. Med. Sci. 61 (2006) 435-443
    • (2006) J. Gerontol. A Biol. Sci. Med. Sci. , vol.61 , pp. 435-443
    • Erickson, R.R.1    Dunning, L.M.2    Holtzman, J.L.3
  • 14
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 15
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: inference and reliability
    • Felsenstein J. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22 (1988) 521-565
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 16
    • 0000273689 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 19 (1971) 99-113
    • (1971) Syst. Zool. , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 17
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity search
    • Gish W., and States D.J. Identification of protein coding regions by database similarity search. Nat. Genet. 3 (1993) 266-272
    • (1993) Nat. Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.J.2
  • 18
    • 0035252410 scopus 로고    scopus 로고
    • Alternative splicing: increasing diversity in the proteomic world
    • Graveley B.R. Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17 (2001) 100-107
    • (2001) Trends Genet. , vol.17 , pp. 100-107
    • Graveley, B.R.1
  • 19
    • 0032956536 scopus 로고    scopus 로고
    • Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein
    • Gribaldo S., Lumia V., Creti R., Conway de Macario E., Sanangelantoni A., and Cammarano P. Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein. J. Bacteriol. 181 (1999) 434-443
    • (1999) J. Bacteriol. , vol.181 , pp. 434-443
    • Gribaldo, S.1    Lumia, V.2    Creti, R.3    Conway de Macario, E.4    Sanangelantoni, A.5    Cammarano, P.6
  • 20
    • 17844396017 scopus 로고    scopus 로고
    • Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability
    • Harrison P.M., Zheng D., Zhang Z., Carriero N., and Gerstein M. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res. 33 (2005) 2374-2383
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2374-2383
    • Harrison, P.M.1    Zheng, D.2    Zhang, Z.3    Carriero, N.4    Gerstein, M.5
  • 21
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy M.D., and Penny D. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38 (1989) 297-309
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 22
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff S., and Henikoff J.G. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 10915-10919
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 23
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis D., and Bull J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.1    Bull, J.2
  • 24
    • 0033813731 scopus 로고    scopus 로고
    • Production of three distinct mRNAs of 150 kDa oxygen-regulated protein (ORP150) by alternative promoters: preferential induction of one species under stress conditions
    • Kaneda S., Yura T., and Yanagi H. Production of three distinct mRNAs of 150 kDa oxygen-regulated protein (ORP150) by alternative promoters: preferential induction of one species under stress conditions. J. Biochem. (Tokyo) 128 (2000) 529-538
    • (2000) J. Biochem. (Tokyo) , vol.128 , pp. 529-538
    • Kaneda, S.1    Yura, T.2    Yanagi, H.3
  • 25
    • 0028782111 scopus 로고
    • Statistical studies of biomolecular sequences: score-based methods
    • Karlin S. Statistical studies of biomolecular sequences: score-based methods. Philos. Trans. R. Soc. Lond. B Biol. Sci. 344 (1994) 391-402
    • (1994) Philos. Trans. R. Soc. Lond. B Biol. Sci. , vol.344 , pp. 391-402
    • Karlin, S.1
  • 26
    • 0031764686 scopus 로고    scopus 로고
    • Heat shock protein 70 family: multiple sequence comparisons, function, and evolution
    • Karlin S., and Brocchieri L. Heat shock protein 70 family: multiple sequence comparisons, function, and evolution. J. Mol. Evol. 47 (1998) 565-577
    • (1998) J. Mol. Evol. , vol.47 , pp. 565-577
    • Karlin, S.1    Brocchieri, L.2
  • 27
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W.J. BLAT-the BLAST-like alignment tool. Genome Res. 12 (2002) 656-664
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 28
    • 17844407888 scopus 로고    scopus 로고
    • ECgene: genome-based EST clustering and gene modeling for alternative splicing
    • Kim N., Shin S., and Lee S. ECgene: genome-based EST clustering and gene modeling for alternative splicing. Genome Res. 15 (2005) 566-576
    • (2005) Genome Res. , vol.15 , pp. 566-576
    • Kim, N.1    Shin, S.2    Lee, S.3
  • 31
    • 3042595139 scopus 로고    scopus 로고
    • Gene conversion and GC-content evolution in mammalian Hsp70
    • Kudla G., Helwak A., and Lipinski L. Gene conversion and GC-content evolution in mammalian Hsp70. Mol. Biol. Evol. 21 (2004) 1438-1444
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1438-1444
    • Kudla, G.1    Helwak, A.2    Lipinski, L.3
  • 33
    • 33745635726 scopus 로고    scopus 로고
    • Evolution of a protein-folding machine: genomic and evolutionary analyses reveal three lineages of the archaeal hsp70(dnaK) gene
    • Macario A.J.L., Brocchieri L., Shenoy A.R., and Conway de Macario E. Evolution of a protein-folding machine: genomic and evolutionary analyses reveal three lineages of the archaeal hsp70(dnaK) gene. J. Mol. Evol. 63 (2006) 74-86
    • (2006) J. Mol. Evol. , vol.63 , pp. 74-86
    • Macario, A.J.L.1    Brocchieri, L.2    Shenoy, A.R.3    Conway de Macario, E.4
  • 35
    • 25844494542 scopus 로고    scopus 로고
    • Sick chaperones, cellular stress, and disease
    • Macario A.J.L., and Conway de Macario E. Sick chaperones, cellular stress, and disease. N. Engl. J. Med. 353 (2005) 1489-1501
    • (2005) N. Engl. J. Med. , vol.353 , pp. 1489-1501
    • Macario, A.J.L.1    Conway de Macario, E.2
  • 36
    • 17844398768 scopus 로고    scopus 로고
    • The pathology of cellular anti-stress mechanisms: a new frontier
    • Macario A.J.L., and Conway de Macario E. The pathology of cellular anti-stress mechanisms: a new frontier. Stress 7 (2004) 243-249
    • (2004) Stress , vol.7 , pp. 243-249
    • Macario, A.J.L.1    Conway de Macario, E.2
  • 37
    • 12144282296 scopus 로고    scopus 로고
    • Genetic disorders involving molecular-chaperone genes: a perspective
    • Macario A.J.L., Grippo T.M., and Conway de Macario E. Genetic disorders involving molecular-chaperone genes: a perspective. Genet. Med. 7 (2005) 3-12
    • (2005) Genet. Med. , vol.7 , pp. 3-12
    • Macario, A.J.L.1    Grippo, T.M.2    Conway de Macario, E.3
  • 38
    • 0037062982 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing and proteome expansion in metazoans
    • Maniatis T., and Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 418 (2002) 236-243
    • (2002) Nature , vol.418 , pp. 236-243
    • Maniatis, T.1    Tasic, B.2
  • 39
    • 0028341506 scopus 로고
    • Comparative analysis of multiple protein-sequence alignment methods
    • McClure M.A., Vasi T.K., and Fitch W.M. Comparative analysis of multiple protein-sequence alignment methods. Mol. Biol. Evol. 11 (1994) 571-592
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 571-592
    • McClure, M.A.1    Vasi, T.K.2    Fitch, W.M.3
  • 40
    • 0031854952 scopus 로고    scopus 로고
    • DIALIGN: finding local similarities by multiple sequence alignment
    • Morgenstern B., Frech K., Dress A., and Werner T. DIALIGN: finding local similarities by multiple sequence alignment. Bioinformatics 14 (1998) 290-294
    • (1998) Bioinformatics , vol.14 , pp. 290-294
    • Morgenstern, B.1    Frech, K.2    Dress, A.3    Werner, T.4
  • 41
    • 0036814834 scopus 로고    scopus 로고
    • Chaperone function and chaperone overload in the aged. A preliminary analysis
    • Nardai G., Csermely P., and Soti C. Chaperone function and chaperone overload in the aged. A preliminary analysis. Exp. Gerontol. 37 (2002) 1257-1262
    • (2002) Exp. Gerontol. , vol.37 , pp. 1257-1262
    • Nardai, G.1    Csermely, P.2    Soti, C.3
  • 42
    • 32344436447 scopus 로고    scopus 로고
    • Chaperone-related immune dysfunction: an emergent property of distorted chaperone networks
    • Nardai G., Vegh E.M., Prohaszka Z., and Csermely P. Chaperone-related immune dysfunction: an emergent property of distorted chaperone networks. Trends Immunol. 27 (2006) 74-79
    • (2006) Trends Immunol. , vol.27 , pp. 74-79
    • Nardai, G.1    Vegh, E.M.2    Prohaszka, Z.3    Csermely, P.4
  • 43
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman S.B., and Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48 (1970) 443-453
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 45
    • 1542682570 scopus 로고    scopus 로고
    • Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates
    • Ohshima K., Hattori M., Yada T., Gojobori T., Sakaki Y., and Okada N. Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates. Genome Biol. 4 (2003) R74
    • (2003) Genome Biol. , vol.4
    • Ohshima, K.1    Hattori, M.2    Yada, T.3    Gojobori, T.4    Sakaki, Y.5    Okada, N.6
  • 46
    • 0028338820 scopus 로고
    • Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites
    • Ota T., and Nei M. Estimation of the number of amino acid substitutions per site when the substitution rate varies among sites. J. Mol. Evol. 38 (1994) 642-643
    • (1994) J. Mol. Evol. , vol.38 , pp. 642-643
    • Ota, T.1    Nei, M.2
  • 47
    • 0000329594 scopus 로고
    • Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree
    • Saitou N., and Imanishi T. Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic tree construction in obtaining the correct tree. Mol. Biol. Evol. 6 (1989) 514-525
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 514-525
    • Saitou, N.1    Imanishi, T.2
  • 48
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 50
    • 0026527758 scopus 로고
    • Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling
    • Smith R.F., and Smith T.F. Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling. Protein Eng. 5 (1992) 35-41
    • (1992) Protein Eng. , vol.5 , pp. 35-41
    • Smith, R.F.1    Smith, T.F.2
  • 51
    • 0034571008 scopus 로고    scopus 로고
    • Molecular chaperones and the aging process
    • Soti C., and Csermely P. Molecular chaperones and the aging process. Biogerontology 1 (2000) 225-233
    • (2000) Biogerontology , vol.1 , pp. 225-233
    • Soti, C.1    Csermely, P.2
  • 52
    • 0142186172 scopus 로고    scopus 로고
    • Aging and molecular chaperones
    • Soti C., and Csermely P. Aging and molecular chaperones. Exp. Gerontol. 38 (2003) 1037-1040
    • (2003) Exp. Gerontol. , vol.38 , pp. 1037-1040
    • Soti, C.1    Csermely, P.2
  • 54
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 55
    • 0348013073 scopus 로고    scopus 로고
    • A genome-wide survey of human pseudogenes
    • Torrents D., Suyama M., Zdobnov E., and Bork P. A genome-wide survey of human pseudogenes. Genome Res. 13 (2003) 2559-2567
    • (2003) Genome Res. , vol.13 , pp. 2559-2567
    • Torrents, D.1    Suyama, M.2    Zdobnov, E.3    Bork, P.4
  • 56
    • 0033664434 scopus 로고    scopus 로고
    • Molecular and functional characterization of HSC54, a novel variant of human heat-shock cognate protein 70
    • Tsukahara F., Yoshioka T., and Muraki T. Molecular and functional characterization of HSC54, a novel variant of human heat-shock cognate protein 70. Mol. Pharmacol. 58 (2000) 1257-1263
    • (2000) Mol. Pharmacol. , vol.58 , pp. 1257-1263
    • Tsukahara, F.1    Yoshioka, T.2    Muraki, T.3
  • 57
    • 0346752110 scopus 로고    scopus 로고
    • Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome
    • Zhang Z., Harrison P.M., Liu Y., and Gerstein M. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. Genome Res. 13 (2003) 2541-2558
    • (2003) Genome Res. , vol.13 , pp. 2541-2558
    • Zhang, Z.1    Harrison, P.M.2    Liu, Y.3    Gerstein, M.4


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