Phytochrome phosphorylation in plant light signaling

Photochemical and Photobiological Sciences

Volumn 4, Issue 9, 2005, Pages 681-687

  Kim, Jeong Il ^a,b   Park, Jeoung Eun ^a,b   Zarate, Xristo ^a,c   Song, Pill Soon ^a,b  

^a Kumho Life and Environmental Science Laboratory   (South Korea)

^b Gyeongsang National University   (South Korea)

^c UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CRYPTOCHROME; PHOSPHOPROTEIN; PHOTOTROPIN; PHYTOCHROME; PIGMENT; PROTEIN KINASE; PROTEIN SERINE THREONINE KINASE; UNCLASSIFIED DRUG; VISUAL PIGMENT;

CONFERENCE PAPER; LIGHT; NONHUMAN; PHOTORECEPTOR; PLANT; PRIORITY JOURNAL; PROTEIN DEPHOSPHORYLATION; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN PHOSPHORYLATION; PROTEIN STRUCTURE; SIGNAL TRANSDUCTION;

EUKARYOTA;

EID: 25444452397     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/b417912a     Document Type: Article

References (90)

1. J. C. Watson Light and protein kinases Adv. Bot. Res. 2000 32 149-184.
2. S. Luan Protein phosphatases in plants Annu. Rev. Plant Biol. 2003 54 63-92.
3. D. Kerk J. Bulgrien D. W. Smith B. Barsam S. Veretnik M. Gribskov The complement of protein phosphatase catalytic subunits encoded in the genome of Arabidopsis Plant Physiol. 2002 129 908-925.
4. J. H. Tchieu F. Fana J. L. Fink J. Harper T. M. Nair R. H. Niedner D. W. Smith K. Steube T. M. Tam S. Veretnik D. Wang M. Gribskov The PlantsP and PlantsT Functional Genomics Databases Nucleic Acids Res. 2003 31 342-344.
5. L. N. Johnson M. O’Reilly Control by phosphorylation Curr. Opin. Struct. Biol. 1996 6 762-769.
6. S. Kawakami H. S. Padgett D. Hosokawa Y. Okada R. N. Beachy Y. Watanabe Phosphorylation and/or presence of serine 37 in the movement protein of tomato mosaic tobamovirus is essential for intracellular localization and stability in vivo J. Virol. 1999 73 6831-6840.
7. T. Pawson Protein modules and signaling networks Nature 1995 373 573-580.
8. G.-Q. Tang S. C. Hardin R. Dewey S. C. Huber A novel C-terminal proteolytic processing of cytosolic pyruvate kinase, its phosphorylation and degradation by the proteasome in developing soybean seeds Plant J. 2003 34 77-93.
9. S. C. Huber S. C. Hardin Numerous post-translational modifications provide opportunities for the intricate regulation of metabolic enzymes at multiple levels Curr. Opin. Plant Biol. 2004 7 318-322.
10. C. S. Hardtke K. Gohda M. T. Osterlund T. Oyama K. Okada K X.-W. Deng HY5 stability and activity in arabidopsis is regulated by phosphorylation in its COP1 binding domain EMBO J. 2000 19 4997-5006.
11. M. M. Neff C. Fankhauser J. Chory Light: an indicator of time and place Genes Dev. 2000 14 257-271.
12. M. Chen J. Chory C. Fankhauser Light signal transduction in higher plants Annu. Rev. Genet. 2004 38 87-117.
13. J. A. Sullivan X.-W. Deng From seed to seed: the role of photoreceptors in Arabidopsis development Dev. Biol. 2003 260 289-297.
14. P. H. Quail M. T. Boylan B. M. Parks T. W. Short Y. Xu D. Wagner Phytochromes: Photosensory perception and signal transduction Science 1995 268 675-680.
15. J. Chory M. Chatterjee R. K. Cook T. Elich C. Fankhauser J. Li P. Nagpal M. Neff A. Pepper D. Poole J. Reed V. Vitart From seed germination to flowering, light controls plant development via pigment phytochrome Proc. Natl. Acad. Sci. USA 1996 93 12066-12071.
16. H. Smith Phytochromes and light signal perception by plants-an emerging synthesis Nature 2000 407 585-591.
17. P. H. Quail Phytochrome photosensory signaling networks Nat. Rev. Mol. Cell. Biol. 2002 3 85-93.
18. C. Fankhauser The phytochromes, a family of red/far-red absorbing photoreceptors J. Biol. Chem. 2001 276 11453-11456.
19. A. R. Cashmore J. A. Jarillo JA Y. J. Wu D. Liu Cryptochromes: blue light receptors for plants and animals Science 1999 284 760-765.
20. C. Lin D. Shalitin Cryptochrome structure and signal transduction Annu. Rev. Plant Biol. 2003 54 469-496.
21. E. Huala P. W. Oeller E. Liscum I.-S. Han E. Larsen W. R. Briggs Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain Science 1997 278 2120-2123.
22. W. R. Briggs J. M. Christie Phototropins 1 and 2: versatile plant blue-light receptors Trends Plant Sci. 2002 7 204-210.
23. N. Datta Y. R. Chen S. J. Roux Phytochrome and calcium stimulation of protein phosphorylation in isolated pea nuclei Biochim. Biophys. Res. Commun. 1985 162 1403-1408.
24. K. Harter H. Frohnmeyer S. Kircher T. Kunkel S Muhlbauer E. Schäfer Light induces rapid changes of the phosphorylation pattern in cytosol of evacuolated parsley protoplasts Proc. Natl. Acad. Sci. USA 1994 91 5038-5042.
25. J. Sheen Protein phosphatase activity is required for light-inducible gene expression in maize EMBO J. 1993 12 3497-3505.
26. M. R. Chandok S. K. Sopory Phosphorylation/dephosphorylation steps are key events in the phytochrome-mediated enhancement of nitrate reductase mRNA levels and enzyme activity in maize Mol. Gen. Genet. 1996 251 599-608.
27. P. Malec A. Yahalom D. A. Chamovitz Identification of a light-regulated protein kinase activity from seedlings of Arabidopsis thaliana Photochem. Photobiol. 2002 75 178-183.
28. P. H. Quail W. R. Briggs L. H. Pratt In vivo phosphorylation of phytochrome Carnegie Institution Yearbook 1978 77 342-344.
29. M. Ahmad J. A. Jarillo O. Smirnova A. R. Cashmore The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro Mol. Cell 1998 1 939-948.
30. D. Shalitin H. Yang T. C. Mockler M. Maymon H. Guo G. C. Whitelam C. Lin Regulation of Arabidopsis cryptochrome 2 by blue-light-dependent phosphorylation Nature 2002 417 763-767.
31. K.-C. Yeh J. C. Lagarias Eukaryotic phytochromes: Light-regulated serine/threonine protein kinases with histidine kinase ancestry Proc. Natl. Acad. Sci. USA 1998 95 13976-13981.
32. J. M. Christie P. Reymond G. K. Powell P. Bernasconi A. A. Raibekas E. Liscum W. R. Briggs Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism Science 1998 282 1698-701.
33. J. P. Bouly B. Giovani A. Djamei M. Mueller A. Zeugner E. A. Dudkin A. Batschauer M. Ahmad Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1 Eur. J. Biochem. 2003 270 2921-2928.
34. D. Shalitin X. Yu M. Maymon T. Mockler C. Lin Blue light-dependent in vivo and in vitro phosphorylation of Arabidopsis cryptochrome 1 Plant Cell 2003 15 2421-2429.
35. C.-M. Park S.-H. Bhoo P.-S. Song Inter-domain crosstalk in the phytochrome molecules Sem. Cell Dev. Biol. 2000 11 449-456.
36. J.-I. Kim G. V. Kozhukh P.-S. Song Phytochrome-mediated signal transduction pathways in plants Biochem. Biophys. Res. Commun. 2002 298 457-463.
37. H. Wang X.-W. Deng Dissecting the phytochrome A-dependent signaling network in higher plants Trends Plant Sci. 2003 8 172-178.
38. E. Schäfer C. Bowler Phytochrome-mediated photoperception and signal transduction in higher plants EMBO Rep. 2002 3 1042-1048.
39. U. Sweere K. Eichenberg J. Lohrmann V. Mira-Rodado I. Baurle J. Kudla F. Nagy E. Schäfer K. Harter Interaction of the response regulator ARR4 with phytochrome B in modulating red light signaling Science 2001 294 1108-1111.
40. Y. Zhu J. M. Tepperman C. D. Fairchild P. H. Quail Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3 Proc. Natl. Acad. Sci. USA 2000 97 13419-13424.
41. B. L. Montgomery J. C. Lagarias Phytochrome ancestry: sensors of bilins and light Trends Plant Sci. 2002 7 357-366.
42. J. R. Cherry D. Hondred J. M. Walker R. D. Viestra Phytochrome requires the 6-kDa N-terminal domain for full biological activity Proc. Natl. Acad. Sci. USA 1992 89 5039-5043.
43. E. T. Jordan J. M. Marita R. C. Clough R. D. Viestra Characterization of regions within the N-terminal 6-kilodalton domain of phytochrome A that modulate its biological activity Plant Physiol. 1997 115 693-704.
44. J. J. Casal S. J. Davis D Kirchenbauer A. Viczian M. J. Yanovsky R. C. Clough S. Kircher E. T. Jordan-Beebe E. Schäfer F. Nagy R. D. Vierstra The serine-rich N-terminal domain of oat phytochrome A helps regulate light responses and subnuclear localization of the photoreceptor Plant Physiol. 2002 129 1127-1137.
45. 2-terminal domains of phytochromes A and B determine their photosensory specificity and differential light lability Proc. Natl. Acad. Sci. USA 1996 93 4011-4015.
46. Y. Oka T. Matsushita N. Mochizuki T. Suzuki S. Tokutomi A. Nagatani Functional analysis of a 450-amino acid N-terminal fragment of phytochrome B in Arabidopsis Plant Cell 2004 16 2104-2116.
47. L. Krall J. W. Reed The histidine kinase-related domain participates in phytochrome B function but is dispensable Proc. Natl. Acad. Sci. USA 2000 97 8169-8174.
48. P. H. Quail The phytochromes: a biochemical mechanism of signaling in sight? BioEssays 1997 19 571-579.
49. J.-I. Kim and P.-S. Song, unpublished.
50. C. Fankhauser K. C. Yeh J.-C. Lagarias H. Zhang T. D. Elich J. Chory PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis Science 1999 284 1539-1541.
51. T. Matsushita N. Mochizuki A. Nagatani Dimers of the N-terminal domain of phytochrome B are functional in the nucleus Nature 2003 424 571-574.
52. Y.-S. Wong H.-C. Cheng D. A. Walsh J. C. Clark Phosphorylation of Avena phytochrome in vitro as a probe of light-induced conformational changes J. Biol. Chem. 1986 261 12089-12097.
53. B. J. Biermann L. I. Pao L. J. Feldman Pr specific phytochrome phosphorylation in vitro by a protein kinase present in anti-phytochrome maize immunoprecipitates Plant Physiol. 1994 105 243-251.
54. R. W. McMichael, Jr. J. C. Lagarias Phosphopeptide mapping of Avena phytochrome phosphorylated by protein kinase in vitro Biochemistry 1990 29 3872-3878.
55. V. N. Lapko X. Y. Jiang D. L. Smith P.-S. Song Post-translational modification of oat phytochrome A: Phosphorylation of a specific serine in a multiple serine cluster Biochemistry 1997 36 10595-10599.
56. V. N. Lapko X. Y. Jiang D. L. Smith P.-S. Song Mass spectrometric characterization of oat phytochrome A: Isoforms and posttranslational modifications Protein Sci. 1999 8 1032-1044.
57. V. N. Lapko T. A. Wells P.-S. Song Protein kinase A-catalyzed phosphorylation and conformational changes in phytochrome A Biochemistry 1996 35 6585-6594.
58. C. Fankhauser Phytochromes as light-modulated protein kinases Semin. Cell Dev. Biol. 2000 11 467-473.
59. J. Stockhaus A. Nagatani U. Halfter S. Kay M. Furuya N.-H. Chua Serine-to-alanine substitutions at the amino-terminal region of phytochrome A result in an increase in biological activity Genes Dev. 1992 6 2364-2372.
60. J.-I. Kim Y. Shen Y.-J. Han D. Kirchenbauer J.-E. Park M.-S. Soh F. Nagy E. Schäfer P.-S Song Phytochrome phosphorylation modulates light signaling by influencing the protein–protein interaction Plant Cell 2004 16 2629-2640.
61. G. Choi H. Yi Y.-K. Kwon M.-S. Soh B. Shin Z. Luka T.-R. Hahn P.-S. Song Phytochrome signaling is mediated through nucleoside diphosphate kinase 2 Nature 1999 401 610-613.
62. Y.-J. Im J.-I. Kim Y. Shen Y. Na Y.-J. Han S.-H. Kim P.-S. Song S. H. Eom Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for plant phytochrome signaling J. Mol. Biol. 2004 343 659-670.
63. M. Ni J. M. Tepperman P. H. Quail PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein Cell 1998 95 657-667.
64. E. Monte J. M. Tepperman B. Al-Sady K. A. Kaczorowski J. M. Alonso J. R. Ecker X. Li Y. Zhang P. H. Quail The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development Proc. Natl. Acad. Sci. USA. 2004 101 16091-16098.
65. Y.-S. Wong R. W. McMichael, Jr. J. C. Clark Properties of a polycation-stimulated protein kinase associated with purified Avena phytochrome Plant Physiol. 1989 91 709-718.
66. H. A. W. Schneider-Poetsch B. Braun S. Marx A. Schaumburg Phytochromes and bacterial sensor proteins are related by structural and functional homologs/hypothesis on phytochrome-mediated signal transduction FEBS Lett. 1991 281 245-259.
67. F. Thümmler P. Algarra G. M. Fobo Sequence similarities of phytochrome to protein kinases: implication for the structure, function and evolution of the phytochrome gene family FEBS Lett. 1995 357 149-155.
68. M. T. Boylan P. H. Quail Are the phytochromes protein kinases? Protoplasma 1996 195 12-17.
69. J. Hughes T. Lamparter F. Mittman E. Hartmann W. Gartner A. Wilde T. Boerner A prokaryotic phytochrome Nature 1997 386 663.
70. K.-C. Yeh S.-H. Wu J. T. Murphy J. C. Lagarias A cyanobacterial phytochrome two-component light sensory system Science 1997 277 1505-1508.
71. A. Colón-Carmona D. L. Chen K.-C. Yeh S. Abel Aux/IAA proteins are phosphorylated by phytochrome in vitro Plant Physiol 2000 124 1728-1738.
72. S.-H. Bhoo S. J. Davis J. Walker B. Karniol R. D. Vierstra Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore Nature 2001 414 776-779.
73. V. N. Lapko and P.-S. Song, unpublished.
74. I.-S. Kim and J.-I. Kim, unpublished.
75. F. Thümmler R. Herbst P. Algarra A. Ullrich Analysis of the protein kinase activity of moss phytochrome expressed in fibroblast cell culture Planta 1995 197 592-596.
76. D.-H. Kim J.-G. Kang S.-S. Yang K.-S. Chung P.-S. Song C.-M. Park A phytochrome associated protein phosphatase 2A modulates light signals in flowering time control in Arabidopsis Plant Cell 2002 14 3043-3056.
77. J. S. Ryu J.-I. Kim T. Kunkel B. C. Kim D. S. Cho S. H. Hong S.-H. Kim A. P. Fernández Y. Kim J. M. Alonso J. R. Ecker F. Nagy P. O. Lim P.-S. Song E. Schäfer H. G. Nam Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal trasducer Cell 2005 120 395-406.
78. S. G. Møller Y.-S. Kim T. Kunkel N.-H. Chua PP7 is a positive regulator of blue light signaling in Arabidopsis Plant Cell 2003 15 1111-1119.
79. I. Sokal A. Pulvermuller J. Buczylko K. P. Hofmann K. Palczawski Rhodopsin and its kinase Methods Enzymol. 2002 343 578-600.
80. J.-I. Kim and P.-S. Song, unpublished.
81. V. Y. Arshavsky Rhodopsin phosphorylation: from terminating single photon responses to photoreceptor dark adaptation Trends Neurosci. 2002 25 124-126.
82. J. M. Maloof J. O. Borevitz T. Dabi J. Lutes R. B. Nehring J. L. Redfern G. T. Trainer J. M. Wilson T. Asami C. C. Berry D. Weigel J. Chory Natural variation in light sensitivity of Arabidopsis Nature Genetics 2001 29 441-446.
83. P. Lariguet H. E. Boccalandro J. M. Alonso J. R. Ecker J. Chory J. J. Casal C. Fankhauser A growth regulatory loop that provides homeostasis to phytochrome a signaling Plant Cell 2003 15 2966-2978.
84. H. Hellmann M. Estelle Plant development: Regulation by protein degradation Science 2002 297 793-797.
85. J.-G. Kang J. Yun D.-H. Kim K.-S. Chung S. Fujioka J.-I. Kim H.-W. Dae S. Yoshida S. Takatsuti P.-S. Song C.-M. Park Light and brassinosteroid signals are integrated via a dark-induced small G protein in etiolated seedling growth Cell 2001 105 625-636.
86. F. Nagy E. Schäfer Phytochrome control photomorphogenesis by differentially regulated, interacting signaling pathways in higher plants Annu. Rev. Plant Biol. 2002 53 329-355.
87. S. Kircher P. Gil L. Kozma-Bognar E. Fejes V. Speth T. Husselstein-Muller D. Bauer E. Adam E. Schafer F. Nagy Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm Plant Cell 2002 14 1541-1555.
88. R. A. Sharrock T. Clack Patterns of expression and normalized levels of the five Arabidopsis phytochromes Plant Physiol. 2002 130 442-456.
89. A. C. Mustilli C. Bowler Tuning in to the signals controlling photoregulated gene expression in plants EMBO J. 1997 16 5801-5806.
90. 2+-binding protein involved in cryptochrome and phytochrome coaction Science 2001 291 487-490.