-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0034942865
-
Universal trees based on large combined protein sequence data sets
-
Brown JR, Douady CJ, Italia MJ, Marshall WE, Stanhope MJ (2001) Universal trees based on large combined protein sequence data sets. Nature Genetics 28:281-285
-
(2001)
Nature Genetics
, vol.28
, pp. 281-285
-
-
Brown, J.R.1
Douady, C.J.2
Italia, M.J.3
Marshall, W.E.4
Stanhope, M.J.5
-
5
-
-
0036061865
-
A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
-
Daubin V, Gouy M, Perriere G (2002) A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. Genome Res 12:1080-1090
-
(2002)
Genome Res
, vol.12
, pp. 1080-1090
-
-
Daubin, V.1
Gouy, M.2
Perriere, G.3
-
7
-
-
0034801336
-
Peptide methionine sulfoxide reductase (MsrA) is a virulence determinant in Mycoplasma genitalium
-
Dhandayuthapani S, Blaylock MW, Bebear CM, Rasmussen WG, Baseman JB (2001) Peptide methionine sulfoxide reductase (MsrA) is a virulence determinant in Mycoplasma genitalium. J Bacteriol 183:5645-5650
-
(2001)
J Bacteriol
, vol.183
, pp. 5645-5650
-
-
Dhandayuthapani, S.1
Blaylock, M.W.2
Bebear, C.M.3
Rasmussen, W.G.4
Baseman, J.B.5
-
8
-
-
0033514307
-
The minimal gene set member msrA, encoding peptide methionine sulfoxide reductase, is a virulence determinant of the peptide of the plant pathogen (MsyA) Erwinia chrysanthemi
-
El Hassouni M, Chambost JP, Expert D, van Gijsegem F, Barras F (1999) The minimal gene set member msrA, encoding peptide methionine sulfoxide reductase, is a virulence determinant of the peptide of the plant pathogen (MsyA) Erwinia chrysanthemi. Proc Natl Acad Sci USA 96:887-892
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 887-892
-
-
El Hassouni, M.1
Chambost, J.P.2
Expert, D.3
van Gijsegem, F.4
Barras, F.5
-
9
-
-
12844259524
-
Methionine sulfoxide reductases in prokaryotes
-
Ezraty B, Aussel B, Barras F (2005) Methionine sulfoxide reductases in prokaryotes. Biochim Biophys Acta 1703:221-229
-
(2005)
Biochim Biophys Acta
, vol.1703
, pp. 221-229
-
-
Ezraty, B.1
Aussel, B.2
Barras, F.3
-
10
-
-
33645229307
-
Tracing oxygen's imprint on Earth's metabolic evolution
-
Falkowski PG (2006) Tracing oxygen's imprint on Earth's metabolic evolution. Science 311:1724-1725
-
(2006)
Science
, vol.311
, pp. 1724-1725
-
-
Falkowski, P.G.1
-
11
-
-
33845913300
-
-
Felsenstein J (1989) PHYLIP, phylogeny inference package version 3.2, Cladistics 5:164-166
-
Felsenstein J (1989) PHYLIP - phylogeny inference package (version 3.2). Cladistics 5:164-166
-
-
-
-
12
-
-
0036467162
-
Thioredoxin and peptide methionine sulfoxide reductase: Convergence of similar structure and function in distinct structural folds
-
Gladyshev VN (2002) Thioredoxin and peptide methionine sulfoxide reductase: convergence of similar structure and function in distinct structural folds. Proteins 46:149-152
-
(2002)
Proteins
, vol.46
, pp. 149-152
-
-
Gladyshev, V.N.1
-
13
-
-
0035966062
-
Repair of oxidized proteins
-
Grimaud R, Ezraty B, Mitchell JK, Lafitte D, Briand C, Derrick PJ, Barras F (2001) Repair of oxidized proteins. J Biol Chem 276:48915-48920
-
(2001)
J Biol Chem
, vol.276
, pp. 48915-48920
-
-
Grimaud, R.1
Ezraty, B.2
Mitchell, J.K.3
Lafitte, D.4
Briand, C.5
Derrick, P.J.6
Barras, F.7
-
14
-
-
33845891145
-
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
-
-
-
-
15
-
-
12844271548
-
Heterogeneity and function of mammalian MSRs: Enzymes for repair, protection and regulation
-
Hansel A, Heinemann SH, Hoshi T (2005) Heterogeneity and function of mammalian MSRs: enzymes for repair, protection and regulation. Biochim Biophys Acta 1703:239-247
-
(2005)
Biochim Biophys Acta
, vol.1703
, pp. 239-247
-
-
Hansel, A.1
Heinemann, S.H.2
Hoshi, T.3
-
17
-
-
0022197949
-
Geomicrobiology of deep-sea hydrothermal vents
-
Jannasch HW, Mottl MJ (1985) Geomicrobiology of deep-sea hydrothermal vents. Science 229:717-725
-
(1985)
Science
, vol.229
, pp. 717-725
-
-
Jannasch, H.W.1
Mottl, M.J.2
-
18
-
-
0033982936
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28:27-30
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
19
-
-
3042834124
-
Methionine sulfoxide reductase A is important for lens cell viability and resistance to oxidative stress
-
Kantorow M, Hawse JR, Cowell TL, Benhamed S, Pizarro GO, Redd VN, Hejtmancik JF (2004) Methionine sulfoxide reductase A is important for lens cell viability and resistance to oxidative stress. Proc Natl Acad Sci USA 101:9654-9659
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9654-9659
-
-
Kantorow, M.1
Hawse, J.R.2
Cowell, T.L.3
Benhamed, S.4
Pizarro, G.O.5
Redd, V.N.6
Hejtmancik, J.F.7
-
20
-
-
0037007089
-
Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase
-
Kryukov GD, Kumar RA, Koc A, Sun Z, Gladyshev VM (2002) Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase. Proc Natl Acad Sci USA 99:4245-4250
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4245-4250
-
-
Kryukov, G.D.1
Kumar, R.A.2
Koc, A.3
Sun, Z.4
Gladyshev, V.M.5
-
21
-
-
15544377794
-
Molecular and evolutionary basis of the cellular stress response
-
Kültz D (2005) Molecular and evolutionary basis of the cellular stress response. Annu Rev Physiol 67:225-257
-
(2005)
Annu Rev Physiol
, vol.67
, pp. 225-257
-
-
Kültz, D.1
-
22
-
-
0037020249
-
Reaction mechanism, evolutionary analysis, and the role of zinc in Drosophila methionine-R-sulfoxide reductase
-
Kumar RA, Koc A, Cerny RL, Gladyshev VN (2002) Reaction mechanism, evolutionary analysis, and the role of zinc in Drosophila methionine-R-sulfoxide reductase. J Biol Chem 277:37527-37535
-
(2002)
J Biol Chem
, vol.277
, pp. 37527-37535
-
-
Kumar, R.A.1
Koc, A.2
Cerny, R.L.3
Gladyshev, V.N.4
-
23
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5:150-163
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
24
-
-
0036239041
-
The mirrowed methionine sulfoxidase reductases of Neisseria gonorrhoeae pilB
-
Lowther WT, Weissbach H, Etienne F, Brot N, Matthews BW (2002) The mirrowed methionine sulfoxidase reductases of Neisseria gonorrhoeae pilB. Nat Struct Biol 9:348-352
-
(2002)
Nat Struct Biol
, vol.9
, pp. 348-352
-
-
Lowther, W.T.1
Weissbach, H.2
Etienne, F.3
Brot, N.4
Matthews, B.W.5
-
27
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
28
-
-
0029789824
-
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
-
Mushegian AR, Koonin EV (1996) A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc Natl Acad Sci USA 93:10268-10273
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10268-10273
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
29
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425:798-804
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
30
-
-
0037022556
-
High-quality life extension by the enzyme peptide methionine sulfoxide reductase
-
Ruan H, Tang XD, Chen ML, Joiner ML, Sun G, Brot N, Weissbach H, Heinemann SH, Iverson L, Wu CF, Toshinori H (2002) High-quality life extension by the enzyme peptide methionine sulfoxide reductase. Proc Natl Acad Sci USA 99:2748-2753
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2748-2753
-
-
Ruan, H.1
Tang, X.D.2
Chen, M.L.3
Joiner, M.L.4
Sun, G.5
Brot, N.6
Weissbach, H.7
Heinemann, S.H.8
Iverson, L.9
Wu, C.F.10
Toshinori, H.11
-
31
-
-
0034669358
-
Diastereoselective protein methionine oxidation by reactive oxygen species and diastereoselective repair by methionine sulfoxide reductase
-
Sharov VS, Schoneich C (2000) Diastereoselective protein methionine oxidation by reactive oxygen species and diastereoselective repair by methionine sulfoxide reductase. Free Radic Biol Med 29:986-994
-
(2000)
Free Radic Biol Med
, vol.29
, pp. 986-994
-
-
Sharov, V.S.1
Schoneich, C.2
-
32
-
-
0032815727
-
Diastereoselective reduction of protein-bound methionine sulfoxide by methionine sulfoxide reductase
-
Sharov VS, Ferrington DA, Squier TC, Schoneich C (1999) Diastereoselective reduction of protein-bound methionine sulfoxide by methionine sulfoxide reductase. FEBS Lett 455:247-250
-
(1999)
FEBS Lett
, vol.455
, pp. 247-250
-
-
Sharov, V.S.1
Ferrington, D.A.2
Squier, T.C.3
Schoneich, C.4
-
33
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
34
-
-
23044449394
-
An archaeal antioxidant: Characterization of a Dps-like protein from Sulfolobus solfataricus
-
Wiedenheft B, Mosolf J, Willits D, Yeager M, Dryden KA, Young M, Douglas T (2005) An archaeal antioxidant: characterization of a Dps-like protein from Sulfolobus solfataricus. Proc Natl Acad Sci USA102:10551-10556
-
(2005)
Proc Natl Acad Sci
, vol.USA102
, pp. 10551-10556
-
-
Wiedenheft, B.1
Mosolf, J.2
Willits, D.3
Yeager, M.4
Dryden, K.A.5
Young, M.6
Douglas, T.7
-
35
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576-4580
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4580
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
|