Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for liqht-responsive gene expression

Plant Cell

Volumn 18, Issue 11, 2006, Pages 2893-2903

  Benhamed, Moussa ^a   Bertrand, Claire ^a   Servet, Caroline ^a   Zhou, Dao Xiu ^a  

^a INSTITUTE OF PLANT SCIENCES PARIS SACLAY IPS2   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYLATION; ENZYMES; GENETIC ENGINEERING;

ARABIDOPSIS THALIANA HISTONE ACETYLTRANSFERASE; GENE EXPRESSION; LIGHT-RESPONSIVE PROMOTERS; PHOTOMORPHOGENIC PHENOTYPE;

PLANT CELL CULTURE;

ACETYLATION; ENZYMES; GENETIC ENGINEERING; PLANTS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33845730777     PISSN: 10404651     EISSN: None     Source Type: Journal    
DOI: 10.1105/tpc.106.043489     Document Type: Article

References (35)

1. Ayadi, M., Delaporte, V., Li, Y.F., and Zhou, D.X. (2004). Analysis of GT-3a identifies a distinct subgroup of trihelix DNA-binding transcription factors in Arabidopsis. FEBS Lett. 562, 147-154.
2. Berger, S.L. (2002). Histone modification in transcriptional regulation. Curr. Opin. Genet. Dev. 12, 142-148.
3. Bertrand, C., Benhamed, M., Li, Y.F., Ayadi, M., Lemonnier, G., Renou, J.P., Delarue, M., and Zhou, D.X. (2005). Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth. J. Biol. Chem. 280, 1465-1473.
4. Bertrand, C., Bergounioux, C., Domenichini, S., Delarue, M., and Zhou, D.X. (2003). Arabidopsis histone acetyltransferase GCN5 regulates the floral meristem activity through the WUSCHEL/AGAMOUS pathway. J. Biol. Chem. 278, 28246-28251.
5. Carrozza, M.J., Utley, R.T., Workman, J.L., and Côté, J. (2003). The diverse function of histone acetyltransferase complexes. Trends Genet. 19, 321-329.
6. Chattopadhyay, S., Ang, L.H., Puente, P., Deng, X.W., and Wei, N. (1998). Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. Plant Cell 10, 673-683.
7. Chua, V.L., Watson, L.A., and Gray, J.C. (2003). The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation. Plant Cell 15, 1468-1479.
8. Dion, M.F., Altschuler, S.J., Wu, L.F., and Rando, O.J. (2005). Genomic characterization reveals a simple histone H4 acetylation code. Proc. Natl. Acad. Sci. USA 102, 5501-5506.
9. Frank, S.R., Schroeder, M., Fernandez, P., Taubert, S., and Amati, B. (2001). Binding of c-Myc to chromatin mediates mitogen-induced acetylation of histone H4 and gene activation. Genes Dev. 15, 2069-2082.
10. Gendrel, A.V., Lippman, Z., Yordan, C., Colot, V., and Martienssen, R.A. (2002). Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science 297, 1871-1873.
11. Grant, P.A., Duggan L., Cote, J., Roberts, S.M., Brownell, J.E., Candau, R., Ohba, R., Owen-Hughes, T., Allis, C.D., Winston, F., Berger, S.L., and Workman, J.L. (1997). Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: Characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev. 11, 1640-1650.
12. Horn, P.J., and Peterson, C.L (2002). Chromatin higher order folding: Wrapping up transcription. Science 297, 1824-1827.
13. Huisinga, K.L., and Pugh, B.F. (2004). A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol. Cell 12, 573-583.
14. Jenuwein, T., and Allis, C.D. (2001). Translating the histone code. Science 293, 1074-1080.
15. Kim, H.J., Hyun, Y., Park, J.Y., Park, M.J., Park, M.K., Kim, M.D., Kim, H.J., Lee, M.H., Moon, J., Lee, I., and Kim, J. (2004). A genetic link between cold responses and flowering time through FVE in Arabidopsis thaliana. Nat. Genet. 36, 167-171.
16. Lee, T.I., Causton, H.C., Holstege, F.C.P., Shen, W.C., Hannett, N., Jennings, E.G., Winston, F., Green, M.R., and Young, R.A. (2000). Redundant roles for TFIID and SAGA complexes in global transcription. Nature 405, 701-704.
17. Loidl, P. (2004). A plant dialect of the histone language. Trends Plant Sci. 9, 84-90.
18. Lusser, A. (2002). Acetylated, methylated, remodeled: Chromatin states for gene regulation. Curr. Opin. Plant Biol. 5, 437-443.
19. Lusser, A., Brosch, G., Loidl, A., Haas, H., and Loidl, P. (1997). Identification of maize histone deacetylase HD2 as an acidic nucleolar phosphoprotein. Science 277, 88-91.
20. Marmorstein, R., and Roth, S.Y. (2001). Histone acetyltransferases: Function, structure, and catalysis. Curr. Opin. Genet. Dev. 11, 155-161.
21. Martinez-Hernandez, A., Lopez-Ochoa, L., Arguello-Astorga, G., and Herrera-Estrella, L. (2002). Functional properties and regulatory complexity of a minimal RBCS light-responsive unit activated by phytochrome, cryptochrome, and plastid signals. Plant Physiol. 128, 1223-1233.
22. Maxwell, B.B., Andersson, C.R., Poole, D.S., Kay, S.A., and Chory, J. (2003). HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. Plant Physiol. 133, 1565-1577.
23. Oyama, T., Shimura, Y., and Okada, K. (1997). The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11, 2983-2995.
24. Pandey, R., Muller, A., Napoli, C.A., Selinger, D.A., Pikaard, C.S., Richards, E.J., Bender, J., Mount, D.W., and Jorgensen, R.A. (2002). Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res. 30, 5036-5055.
25. Sterner, D.E., and Berger, S.L. (2000). Acetylation of histone and transcription-related factors. Microbiol. Mol. Biol. Rev. 64, 435-459.
26. Stockinger, E.J., Mao, Y., Regier, M.K., Triezenberg, S.J., and Thomashow, M.F. (2001). Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression. Nucleic Acids Res. 29, 1524-1533.
27. Tian, L., and Chen, Z.J. (2001). Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development. Proc. Natl. Acad. Sci. USA 98, 200-205.
28. Tian, L., Fong, M.P., Wang, J.J., Wei, N.E., Jiang, H., Doerge, R.W., and Chen, Z.J. (2005). Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development. Genetics 169, 337-345.
29. Tian, L., Wang, J., Fong, M.P., Chen, M., Cao, H., Gelvin, S.B., and Chen, Z.J. (2003). Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (HD1) expression. Genetics 165, 399-409.
30. Tian, Q., Uhlir, N.J., and Reed, J.W. (2002). Arabidopsis SHY2/IAA3 inhibits auxin-regulated gene expression. Plant Cell 14, 301-319.
31. Varotto, S., Locatelli, S., Canova, S., Pipal, A., Motto, M., and Rossi, V. (2003). Expression profile and cellular localization of maize Rpd3-type histone deacetylases during plant development. Plant Physiol. 133, 606-617.
32. Vlachonasios, K.E., Thomashow, M.F., and Triezenberg, S.J. (2003). Disruption mutations of ADA2b and GCN5 transcriptional adaptor genes dramatically affect Arabidopsis growth, development, and gene expression. Plant Cell 15, 626-638.
33. Wu, K., Malik, K., Tian, L., Brown, D., and Miki, B. (2000). Functional analysis of a RPD3 histone deacetylase homolog in Arabidopsis thaliana. Plant Mol. Biol. 44, 167-176.
34. Yadav, V., Kundu, S., Chattopadhyay, D., Negi, P., Wei, N., Deng, X.W., and Chattopadhyay, S. (2002). Light regulated modulation of Z-box containing promoters by photoreceptors and downstream regulatory components, COP1 and HY5, in Arabidopsis. Plant J. 31, 741-753.
35. Yadav, V., Mallappa, C., Gangappa, S.N., Bhatia, S., and Chattopadhyay, S. (2005). A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Plant Cell 17, 1953-1966.