Combinatorial synthesis and directed evolution applied to the production of α-helix forming antimicrobial peptides analogues

Current Protein and Peptide Science

Volumn 7, Issue 6, 2006, Pages 473-478

  Castro, Mariana S ^a   Cilli, Eduardo M ^b   Fontes, Wagner ^a  

^a UNIVERSITY OF BRASILIA   (Brazil)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

Amphipathic helix; Antimicrobial peptides; Combinatorial synthesis; Directed evolution; High throughput

Indexed keywords

ANTIBIOTIC AGENT; DNA; HISTIDYL DEXTRO TRYPTOPHYLALANYLTRYPTOPHYL DEXTRO PHENYLALANYLLYSINAMIDE; MELITTIN; PLEUROCIDIN; POLYPEPTIDE ANTIBIOTIC AGENT; PSEUDIN 2;

ALPHA HELIX; AMINO ACID SEQUENCE; AMPHIBIA; ANTIBIOTIC RESISTANCE; ANTIFUNGAL ACTIVITY; BACTERIAL STRAIN; COMBINATORIAL CHEMISTRY; COMBINATORIAL LIBRARY; COMPUTER MODEL; DNA SHUFFLING; DRUG ACTIVITY; DRUG DESIGN; DRUG SCREENING; DRUG SPECIFICITY; DRUG STRUCTURE; DRUG SYNTHESIS; DRUG TARGETING; ESCHERICHIA COLI; FUNGUS; GENETIC ENGINEERING; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; HIGH THROUGHPUT SCREENING; HUMAN; HYDROPHOBICITY; IN VITRO STUDY; INNATE IMMUNITY; INSECT; MICROORGANISM; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; PLANT; POLYMERASE CHAIN REACTION; PROTEIN ENGINEERING; PROTEIN MOTIF; PROTOZOON; REVIEW; STAPHYLOCOCCUS AUREUS;

AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; COMBINATORIAL CHEMISTRY TECHNIQUES; DIRECTED MOLECULAR EVOLUTION; MOLECULAR SEQUENCE DATA; PEPTIDES; PROTEIN CONFORMATION;

AMPHIBIA; HEXAPODA;

EID: 33845357231     PISSN: 13892037     EISSN: None     Source Type: Journal    
DOI: 10.2174/138920306779025648     Document Type: Review

References (53)

1. Levy, S.B. (2005) Adv. Drug Deliv. Rev., 57, 1446-1450.
2. Levy, S.B. and Marshall, B. (2004) Nat. Med., 10, S122-129.
3. Zasloff, M. (2002) Nature, 415, 389-395.
4. Bulet, P., Stocklin, R. and Menin, L. (2004) Immunol. Rev., 198,169-184.
5. Lay, F.T. and Anderson, M.A. (2005) Curr. Protein Pept. Sci., 6, 85-101.
6. Reddy, K.V., Yedery, R.D. and Aranha, C. (2004) Int. J. Antimicrob. Agents, 24, 536-547.
7. Izadpanah, A. and Gallo, R.L. (2005) J. Am. Acad. Dermatol., 52, 381-390.
8. Mygind, P.H., Fischer, R.L., Schnorr, K.M., Hansen, M.T., Sönksen, C.P., Ludvigsen, S., Raventós, D., Buskov, S., Christensen, B., De Maria, L., Taboureau, O., Yaver, D., Elvig-Jørgensen, S.G., Sørensen, M.V., Christensen, B.E., Kjærulff, S., Frimodt-Moller, N., Lehrer, R.I., Zasloff, M. and Kristensen, H.H. (2005) Nature, 437, 975-980.
9. Bulet, P. and Stocklin, R. (2005) Protein Pept. Lett., 12, 3-11.
10. Park, Y. and Hahm, K. S. (2005) J. Biochem. Mol. Biol., 38, 507-516.
11. Shai, Y. (1999) Biochim. Biophys. Acta, 1462, 55-70.
12. Matsuzaki, K. (1999) Biochim. Biophys. Acta, 1462, 1-10.
13. Yount, N.Y. and Yeaman, M.R. (2005) Protein Pept. Lett., 12, 49-67.
14. Matsuzaki K. (1998) Biochim. Biophys. Acta, 1376, 391-400.
15. Oren, Z. and Shai, Y. (1998) Biopolymers, 47, 451-463.
16. Nascimento, A.C.C., Fontes, W., Sebben, A. and Castro, M.S. (2003) Protein Pept. Lett., 10, 227-238.
17. Pal, T., Sonnevend, A., Galadari, S. and Conlon, J.M. (2005) Regul. Pept., 129, 85-91.
18. Nell, M.J., Tjabringa, G.S., Wafelman, A.R., Verrijk, R., Hiemstra, P.S., Drijfhout, J.W. and Grote, J.J. (2006) Peptides, 27, 649-660.
19. Lee, D.G., Kim, H.N., Park, Y., Kim, H.K., Choi, B.H., Choi, C.H. and Hahm, K.S. (2002) Biochim. Biophys. Acta, 1598, 185-194.
20. Sun, X., Chen, S., Li, S., Yan, H., Fan, Y. and Mi, H. (2005) Peptides, 26, 369-375.
21. Yoshida, K., Mukai, Y., Niidome, T., Takashi, C., Tokunaga, Y., Hatakeyama, T. and Aoyagi, H. (2001) J. Pept. Res., 57, 119-126.
22. Lee, K., Shin, S.Y., Kim, K., Lim, S.S., Hahm, K.S. and Kim, Y. (2004) Biochem. Biophys. Res. Commun., 323, 712-719.
23. Lim, S.S., Kim, Y., Park, Y., Kim, J.I., Park, I.S., Hahm, K.S. and Shin, S.Y. (2005) Biochem. Biophys. Res. Commun., 334, 1329-1335.
24. Castro, M.S., Matsushita, R.H., Sebben, A., Sousa, M.V. and Fontes, W. (2005) Protein Pept. Lett., 12, 89-93.
25. Nascimento, A.C., Zanotta, L.C., Kyaw, C.M., Schwartz, E.N., Schwartz, C.A., Sebben, A., Sousa, M.V., Fontes, W. and Castro, M. S. (2004) Protein J., 23, 501-508.
26. Gordon, E.M., Barrett, R.W., Dower, W.J., Fodor, S.P. and Gallop, M.A. (1994) J. Med. Chem., 37, 1385-1401.
27. Gordon, E. M., Gallop, M.A. and Patel, D.V. (1996) Acc. Chem. Res., 29, 144-154.
28. Maehr, H. (1997) Bioorg. Med. Chem., 5, 473-491.
29. Seneci, P. (2000) in Solid-Phase Synthesis and Combinatorial Technologies. Wiley-Interscience, New York.
30. Albericio, F. (2000) Biopolymers, 55, 123-139.
31. Bajorath, F. (2002) Nat. Rev. Drug Discov., 1, 882-894.
32. Raventos, D., Taboureau, O., Mygind, P.H., Nielsen, J.D., Sonksen, C.P. and Kristensen, H.H. (2005) Comb. Chem. High Throughput Screen, 8, 219-233.
33. Mestres, J. and Knegtel, R.M.A. (2000) Perspect. Drug Discov. Des., 20, 191-207.
34. Halperin, I., Ma, B.Y., Wolfson, H. and Nussinov, R. (2002) Proteins, 47, 409-443.
35. Houghten, R.A., Pinilla, C., Blondelle, S.E., Appel, J.R., Dooley, C.T. and Cuervo, J.H. (1991) Nature, 354, 84-86.
36. Houghten, R.A., Appel, J.R., Blondelle, S.E., Cuervo, J.H., Dooley, C.T. and Pinilla, C. (1992) Biotechniques, 13, 412-421.
37. Blondelle, S.E., Takahashi, E., Houghten, R.A., Perez-Paya, E. (1996) Biochem. J., 313, 141-147.
38. Blondelle, S.E. and Lohner, K. (2000) Biopolymers, 55, 74-87.
39. Boggiano, C., Reixach, N., Pinilla, C. and Blondelle, S.E. (2003) Biopolymers, 71, 103-116.
40. Kumar, M., Chaturvedi, A.K., Kavishwar, A., Shukla, P.K., Kesarwani, A.P. and Kundu, B. (2005) Int. J. Antimicrob. Agents, 25, 313-320.
41. Kundu, B., Srinivasan, T., Kesarwani, A.P. (2002) Bioorg. Med. Chem. Lett., 12, 1473-1476.
42. Kundu, B., Rastogi, S.K., Barra, S., Raghuwanshi, S.K. and Shukla, P.K. (2000) Bioorg. Med. Chem. Lett., 10, 1779-1781.
43. Stemmer, W.P. (1994) Proc. Natl. Acad. Sci. USA, 91, 10747-10751.
44. Harayama, S. (1998) Trends Biotechnol., 16, 76-82.
45. Neylon, C. (2004) Nucleic Acids Res., 32, 1448-1459.
46. Khan, M.I., Ito, K., Kim, H., Ashida, H., Ishikawa, T., Shibata, H. and Sawa, Y. (2005) Biosci. Biotechnol. Biochem., 69, 1861-1870.
47. Alcalde, M., Bulter, T., Zumarraga, M., Garcia-Arellano, H., Mencia, M., Plou, F.J. and Ballesteros, A. (2005) J. Biomol. Screen, 10, 624-631.
48. Wang, T., Liu, X., Yu, Q., Zhang, X., Qu, Y., Gao, P. and Wang, T. (2005) Biomol. Eng., 22, 89-94.
49. Chopra, S. and Ranganathan, A. (2003) Chem. Biol., 10, 917-926.
50. Rao, A., Chopra, S., Ram, G., Gupta, A. and Ranganathan, A. (2005) J. Biol. Chem., 280, 23605-23614.
51. National Committee for Clinical Laboratory Standards. (1997) Approved standard M7-A4, Vol. 4, Wayne, PA.
52. National Committee for Clinical Laboratory Standards. (1997) Approved standard M27-A, Vol. 9, Wayne, PA.
53. Rausch, J.M., Marks, J.S. and Wimley, W.C. (2005) Proc. Natl. Acad. Sci. USA, 102, 10511-10515.