Carbon monoxide as an intrinsic ligand to iron in the active site of the iron-sulfur-cluster-free hydrogenase H2-forming methylenetetrahydromethanopterin dehydrogenase as revealed by infrared spectroscopy

Journal of the American Chemical Society

Volumn 126, Issue 43, 2004, Pages 14239-14248

  Lyon, Erica J ^a   Shima, Seigo ^a   Boecher, Reinhard ^a   Thauer, Rudolf K ^a   Grevels, Friedrich Wilhelm ^b   Bill, Eckhard ^b   Roseboom, Winfried ^c   Albracht, Simon P J ^c  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b MAX PLANCK INSTITUTE FOR CHEMICAL ENERGY CONVERSION   (Germany)

^c UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMES; FOURIER TRANSFORM INFRARED SPECTROSCOPY; FREQUENCIES; INFRARED SPECTROSCOPY;

EXTRACTABLE COFACTORS; METHANOGENIC ARCHAEA; MOLECULES BOUND; STRETCHING FREQUENCIES;

CARBON MONOXIDE;

CARBON MONOXIDE; CYANIDE; IRON; METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE; OXIDOREDUCTASE; SULFUR; UNCLASSIFIED DRUG;

ARCHAEBACTERIUM; ARTICLE; INFRARED SPECTROSCOPY; METHANOBACTERIUM;

ARCHAEAL PROTEINS; BINDING SITES; BINDING, COMPETITIVE; CARBON ISOTOPES; CARBON MONOXIDE; CYANIDES; HYDROGEN; HYDROGEN-ION CONCENTRATION; IRON COMPOUNDS; LIGHT; METHANOBACTERIACEAE; OXIDOREDUCTASES ACTING ON CH-NH GROUP DONORS; OXYGEN; PTERINS; SPECTROPHOTOMETRY, INFRARED;

EID: 7444269837     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja046818s     Document Type: Article

References (52)

1. Bagley, K. A.; Van Garderen, C. J.; Chen, M.; Duin, E. C.; Albracht, S. P.; Woodruff, W. H. Biochemistry 1994, 33, 9229.
2. Bagley, K. A.; Duin, E. C.; Roseboom, W.; Albracht, S. P.; Woodruff, W. H. Biochemistry 1995, 34, 5527.
3. Volbeda, A.; Charon, M. H.; Piras, C.; Hatchikian, E. C.; Frey, M.; Fontecilla-Camps, J. C. Nature 1995, 373, 580.
4. Pierik, A. J.; Roseboom, W.; Happe, R. P.; Bagley, K. A.; Albracht, S. P. J. Biol. Chem. 1999, 274, 3331.
5. Happe, R. P.; Roseboom, W.; Pierik, A. J.; Albracht, S. P.; Bagley, K. A. Nature 1997, 385, 126.
6. van der Zwaan, J. W.; Albracht, S. P. J.; Fontijn, R. D.; Roelofs, Y. B. M. Biochim. Biophys. Acta 1986, 872, 208.
7. van der Spek, T. M.; Arendsen, A. F.; Happe, R. P.; Yun, S.; Bagley, K. A.; Stufkens, D. J.; Hagen, W. R.; Albracht, S. P. Eur. J. Biochem. 1996, 237, 629.
8. Peters, J. W.; Lanzilotta, W. N.; Lemon, B. J.; Seefeldt, L. C. Science 1998, 282, 1853.
9. Nicolet, Y.; Piras, C.; Legrand, P.; Hatchikian, C. E.; Fontecilla-Camps, J. C. Structure (London) 1999, 7, 13.
10. Pierik, A. J.; Hulstein, M.; Hagen, W. R.; Albracht, S. P. Eur. J. Biochem. 1998, 258, 572.
11. Lemon, B. J.; Peters, J. W. Biochemistry 1999, 38, 12969.
12. Bennett, B.; Lemon, B. J.; Peters, J. W. Biochemistry 2000, 39, 7455.
13. De Lacey, A. L.; Stadler, C.; Cavazza, C.; Hatchikian, E. C.; Fernandez, V. M. J. Am. Chem. Soc. 2000, 122, 11232.
14. Chen, Z.; Lemon, B. J.; Huang, S.; Swartz, D. J.; Peters, J. W.; Bagley, K. A. Biochemistry 2002, 41, 2036.
15. George, S. J.; Kurkin, S.; Thorneley, R. N. F.; Albracht, S. P. J. Biochemistry 2004, 43, 6808.
16. Kurkin, S.; George, S. J.; Thorneley, R. N.; Albracht, S. P. J. Biochemistry 2004, 43, 6820.
17. Hydrogen as a Fuel: Learning from Nature; Cammack, R., Frey, M., Robson, R., Eds.; Taylor & Francis: London, 2001.
18. Frey, M. ChemBioChem 2002, 3, 153.
19. Nicolet, Y.; Cavazza. C.; Fontecilla-Camps, J. C. J. Inorg. Biochem. 2002, 91, 1.
20. Vignais, P. M.; Billoud, B.; Meyer, J. FEMS Microbiol. Rev. 2001, 25, 455.
21. Thauer, R. K.; Klein, A. R.; Hartmann, G. C. Chem. Rev. 1996, 96, 3031.
22. Schleucher, J.; Griesinger, C.; Schwörer, B.; Thauer, R. K. Biochemistry 1994, 33, 3986.
23. Klein, A. R.; Hartmann, G. C.; Thauer, R. K. Eur. J. Biochem. 1995, 233, 372.
24. Zirngibl, C.; Hedderich, R.; Thauer, R. K. FEBS Lett. 1990, 261, 112.
25. Ma, K.; Zirngibl, C.; Linder, D.; Stetter, K. O.; Thauer, R. K. Arch. Microbiol. 1991, 156, 43.
26. Zirngibl, C.; van Dongen, W.; Schwörer, B.; von Bünau, R.; Richter, M.; Klein, A.; Thauer, R. K. Eur. J. Biochem. 1992, 208, 511.
27. Schwörer, B.; Fernandez, V. M.; Zirngibl, C.; Thauer, R. K. Eur. J. Biochem. 1993, 212, 255.
28. Hartmann, G. C.; Santamaria, E.; Fernández, V. M.; Thauer, R. K. J. Biol. Inorg. Chem. 1996, 1, 446.
29. 4MPT. To test the possibility of contamination with [NiFe]-hydrogenase, we determined the rest exchange activity under air using the purified [NiFe]-hydrogenase Mvh from M. marburgensis as a control. Whereas the rest exchange activity of Hmd was only slightly decreased (10%) in the presence of molecular oxygen, the exchange activity of the [NiFe]-hydrogenase was completely blocked under these conditions. Furthermore, we showed that the rest exchange activity of Hmd was light sensitive, a property not exhibited by [NiFe]-hydrogenases. It therefore has to be seriously considered that the rest exchange activity of Hmd is an intrinsic property of the enzyme, which would be of great importance for mechanistic considerations.
30. Afting, C.; Hochheimer, A.; Thauer, R. K. Arch. Microbiol. 1998, 169, 206.
31. Afting, C.; Kremmer, E.; Brucker. C.; Hochheimer, A.; Thauer, R. K. Arch. Microbiol. 2000, 174, 225.
32. Buurman, G.; Shima, S.; Thauer, R. K. FEBS Lett. 2000, 485, 200.
33. Lyon, E. J.; Shima, S.; Buurman, G.; Chowdhuri, S.; Batschauer, A.; Steinbach, K.; Thauer, R. K. Eur. J. Biochem. 2004, 271, 195.
34. Shima, S.; Lyon, E. J.; Sordel-Klippert, M.; Kauss, M.; Kahnt, J.; Thauer, R. K.; Steinbach, K.; Xie, X.; Verdier, L.; Griesinger, C. Angew. Chem., Int. Ed. 2004, 116, 2601.
35. Shima, S.; Thauer, R. K. Methods Enzymol. 2001, 331, 317.
36. Escalante-Semerena, J. C.; Rinehart, K. L., Jr.; Wolfe, R. S. J. Biol. Chem. 1984, 259, 9447.
37. Bradford, M. M. Anal. Biochem. 1976, 72, 248.
38. Fish, W. W. In Methods in Enzymology; Riordan. J. F., Vallee, B. L., Eds.; Academic Press: New York, 1988; Vol. 158.
39. Nakamoto, K. Infrared and Roman Spectra of Inorganic and Coordination Compounds, 5th ed.; Wiley-Interscience: New York, 1997; Parts A and B.
40. Cotton, F. A.; Wilkinson, G. In Advanced Inorganic Chemistry. 5th ed.; Wiley-Interscience: New York, 1988.
41. Cotton, F. A.; Kraihanzel, C. S. J. Am. Chem. Soc. 1962, 84, 4432.
42. Braterman, P. S. Metal Carbonyl Spectra; Academic Press: London, 1975.
43. + was extrapolated to be approximately 1% CO [0.01 mM CO] at room temperature.
44. Dynamic NMR Spectroscopy; Jackman, L. M., Cotton, F. A., Eds.; Academic Press: New York, 1975.
45. See, for example: Kruczynski, L.; Takats, J. Inorg. Chem. 1976, 15, 3140.
46. Grevels, F. W.; Kerpen, K.; Klotzbucher, W. E.; McClung, R. E. D.; Russell, G.; Viotte, M.; Schaffner, K. J. Am. Chem. Soc. 1998, 120, 10423.
47. Lai, C.-H.; Lee, W.-Z.; Miller, M. L.; Reibenspies, J. H.; Darensbourg, D. J.; Darensbourg, M. Y. J. Am. Chem. Soc. 1998, 120, 10103.
48. Liquide, L. A. Gas Encyclopaedia; Elsevier: Amsterdam, The Netherlands, 1976.
49. Bartoschek, S.; Buurman, G.; Thauer, R. K.; Geierstanger, B. H.; Weyrauch, J. P.; Griesinger, C.; Nilges, M.; Hutter, M.; Helms, V. ChemBioChem 2001, 2, 530.
50. Geierstanger, B. H.; Prasch, T.; Griesinger, C.; Hartmann, G.; Buurman, G.; Thauer, R. K. Angew. Chem., Int. Ed. 1998, 37, 3300.
51. 3 and its CO adduct, is also difficult to imagine in such an environment.
52. Goldfield, S. A.; Raymond, K. N. Inorg. Chem. 1974, 13, 770.