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Volumn 12, Issue 12, 2006, Pages 2135-2148

The precursor tRNA 3′-CCA interaction with Escherichia coli RNase P RNA is essential for catalysis by RNase P in vivo

Author keywords

CCA RNase P RNA interaction; E. coli ribonuclease P; In vivo complementation studies; Point mutations

Indexed keywords

ARABINOSE; HOLOENZYME; MAGNESIUM; RIBONUCLEASE P; TRANSFER RNA;

EID: 33845270966     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.188306     Document Type: Article
Times cited : (48)

References (36)
  • 1
    • 0021929046 scopus 로고
    • Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187
    • Alatossava, T., Jutte, H., Kuhn, A., and Kellenberger, E. 1985. Manipulation of intracellular magnesium content in polymyxin B nonapeptide-sensitized Escherichia coli by ionophore A23187. J. Bacteriol. 162: 413-419.
    • (1985) J. Bacteriol. , vol.162 , pp. 413-419
    • Alatossava, T.1    Jutte, H.2    Kuhn, A.3    Kellenberger, E.4
  • 2
    • 0003120548 scopus 로고    scopus 로고
    • (eds. R.F. Gesteland et al.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Altman, S. and Kirsebom, L.A. 1999. The RNA world (eds. R.F. Gesteland et al.), pp. 351-380. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1999) The RNA World , pp. 351-380
    • Altman, S.1    Kirsebom, L.A.2
  • 3
    • 0023777735 scopus 로고
    • Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli
    • Amann, E., Ochs, B., and Abel, K.J. 1988. Tightly regulated tac promoter vectors useful for the expression of unfused and fused proteins in Escherichia coli. Gene 69: 301-315.
    • (1988) Gene , vol.69 , pp. 301-315
    • Amann, E.1    Ochs, B.2    Abel, K.J.3
  • 4
    • 0017090899 scopus 로고
    • Nucleotide sequence and in vitro processing of a precursor molecule to Escherichia coli 4.5 S RNA
    • Bothwell, A.L., Garber, R.L., and Altman, S. 1976. Nucleotide sequence and in vitro processing of a precursor molecule to Escherichia coli 4.5 S RNA. J. Biol. Chem. 251: 7709-7716.
    • (1976) J. Biol. Chem. , vol.251 , pp. 7709-7716
    • Bothwell, A.L.1    Garber, R.L.2    Altman, S.3
  • 5
    • 0037462873 scopus 로고    scopus 로고
    • Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination
    • Brännvall, M., Pettersson, B.M.F., and Kirsebom, L.A. 2003. Importance of the +73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination. J. Mol. Biol. 325: 697-709.
    • (2003) J. Mol. Biol. , vol.325 , pp. 697-709
    • Brännvall, M.1    Pettersson, B.M.F.2    Kirsebom, L.A.3
  • 6
    • 27144527101 scopus 로고    scopus 로고
    • Protein activation of a ribozyme: The role of bacterial RNase P protein
    • Buck, A.H., Dalby, A.B., Poole, A.W., Kazantsev, A.V., and Pace, N.R. 2005. Protein activation of a ribozyme: The role of bacterial RNase P protein. EMBO J. 24: 3360-3368.
    • (2005) EMBO J. , vol.24 , pp. 3360-3368
    • Buck, A.H.1    Dalby, A.B.2    Poole, A.W.3    Kazantsev, A.V.4    Pace, N.R.5
  • 9
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K.A. and Wanner, B.L. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. 97: 6640-6645.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 10
    • 4644305092 scopus 로고    scopus 로고
    • Ionic interactions between P RNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay
    • Day-Storms, J.J., Niranjanakumari, S., and Fierke, C.A. 2004. Ionic interactions between P RNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay. RNA 10: 1595-1608.
    • (2004) RNA , vol.10 , pp. 1595-1608
    • Day-Storms, J.J.1    Niranjanakumari, S.2    Fierke, C.A.3
  • 11
    • 1642564526 scopus 로고    scopus 로고
    • Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: The universally conserved residues G693 and C795 regulate P-site RNA binding
    • Dinos, G., Wilson, D.N., Teraoka, Y., Szaflarski, W., Fucini, P., Kalpaxis, D., and Nierhaus, K.H. 2004. Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: The universally conserved residues G693 and C795 regulate P-site RNA binding. Mol. Cell 13: 113-124.
    • (2004) Mol. Cell , vol.13 , pp. 113-124
    • Dinos, G.1    Wilson, D.N.2    Teraoka, Y.3    Szaflarski, W.4    Fucini, P.5    Kalpaxis, D.6    Nierhaus, K.H.7
  • 12
    • 33745166320 scopus 로고    scopus 로고
    • RNase P: Interface of the RNA and protein worlds
    • Evans, D., Marquez, S.M., and Pace, N.R. 2006. RNase P: Interface of the RNA and protein worlds. Trends Biochem. Sci. 31: 333-341.
    • (2006) Trends Biochem. Sci. , vol.31 , pp. 333-341
    • Evans, D.1    Marquez, S.M.2    Pace, N.R.3
  • 13
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N., and Altman, S. 1983. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35: 849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 14
    • 0030011805 scopus 로고    scopus 로고
    • Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA
    • Hardt, W.D. and Hartmann, R.K. 1996. Mutational analysis of the joining regions flanking helix P18 in E. coli RNase P RNA. J. Mol. Biol. 259: 422-433.
    • (1996) J. Mol. Biol. , vol.259 , pp. 422-433
    • Hardt, W.D.1    Hartmann, R.K.2
  • 15
    • 0028934068 scopus 로고
    • Kinetics and thermodynamics of the RNase P RNA cleavage reaction: Analysis of tRNA 3′-end variants
    • Hardt, W.D., Schlegl, J., Erdmann, V.A., and Hartmann, R.K. 1995. Kinetics and thermodynamics of the RNase P RNA cleavage reaction: Analysis of tRNA 3′-end variants. J. Mol. Biol. 247: 161-172.
    • (1995) J. Mol. Biol. , vol.247 , pp. 161-172
    • Hardt, W.D.1    Schlegl, J.2    Erdmann, V.A.3    Hartmann, R.K.4
  • 16
    • 0038170017 scopus 로고    scopus 로고
    • Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P
    • Harris, M.E. and Christian, E.L. 2003. Recent insights into the structure and function of the ribonucleoprotein enzyme ribonuclease P. Curr. Opin. Struct. Biol. 13: 325-333.
    • (2003) Curr. Opin. Struct. Biol. , vol.13 , pp. 325-333
    • Harris, M.E.1    Christian, E.L.2
  • 17
    • 0141450351 scopus 로고    scopus 로고
    • The enigma of ribonuclease P evolution
    • Hartmann, E. and Hartmann, R.K. 2003. The enigma of ribonuclease P evolution. Trends Genet. 19: 561-569.
    • (2003) Trends Genet. , vol.19 , pp. 561-569
    • Hartmann, E.1    Hartmann, R.K.2
  • 18
    • 0029074106 scopus 로고
    • Precursor of C4 antisense RNA of bacteriophages P1 and P7 is a substrate for RNase P of Escherichia coli
    • Hartmann, R.K., Heinrich, J., Schlegl, J., and Schuster, H. 1995. Precursor of C4 antisense RNA of bacteriophages P1 and P7 is a substrate for RNase P of Escherichia coli. Proc. Natl. Acad. Sci. 92: 5822-5826.
    • (1995) Proc. Natl. Acad. Sci. , vol.92 , pp. 5822-5826
    • Hartmann, R.K.1    Heinrich, J.2    Schlegl, J.3    Schuster, H.4
  • 19
    • 0032590013 scopus 로고    scopus 로고
    • 2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA
    • 2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA. RNA 5: 102-116.
    • (1999) RNA , vol.5 , pp. 102-116
    • Heide, C.1    Pfeiffer, T.2    Nolan, J.M.3    Hartmann, R.K.4
  • 20
    • 0021630190 scopus 로고
    • Cloning and sequence analysis of the Escherichia coli 4.5 S RNA gene
    • Hsu, L.M., Zagorski, J., and Fournier, M.J. 1984. Cloning and sequence analysis of the Escherichia coli 4.5 S RNA gene. J. Mol. Biol. 178: 509-531.
    • (1984) J. Mol. Biol. , vol.178 , pp. 509-531
    • Hsu, L.M.1    Zagorski, J.2    Fournier, M.J.3
  • 21
    • 27144457486 scopus 로고    scopus 로고
    • Processing of M1 RNA at the 3′ end protects its primary transcript from degradation
    • Kim, K.S., Sim, S., Ko, J.H., and Lee, Y. 2005. Processing of M1 RNA at the 3′ end protects its primary transcript from degradation. J. Biol. Chem. 280: 34667-34674.
    • (2005) J. Biol. Chem. , vol.280 , pp. 34667-34674
    • Kim, K.S.1    Sim, S.2    Ko, J.H.3    Lee, Y.4
  • 22
    • 0027973546 scopus 로고
    • Base pairing between Escherichia coli RNase P RNA and its substrate
    • Kirsebom, L.A. and Svärd, S.G. 1994. Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J. 13: 4870-4876.
    • (1994) EMBO J. , vol.13 , pp. 4870-4876
    • Kirsebom, L.A.1    Svärd, S.G.2
  • 23
    • 0031849761 scopus 로고    scopus 로고
    • The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain
    • Kufel, J. and Kirsebom, L.A. 1998. The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain. RNA 4: 777-788.
    • (1998) RNA , vol.4 , pp. 777-788
    • Kufel, J.1    Kirsebom, L.A.2
  • 24
    • 0242515818 scopus 로고    scopus 로고
    • The effect of a single, temperature-sensitive mutation on global gene expression in Escherichia coli
    • Li, Y., Cole, K., and Altman, S. 2003. The effect of a single, temperature-sensitive mutation on global gene expression in Escherichia coli. RNA 9: 518-532.
    • (2003) RNA , vol.9 , pp. 518-532
    • Li, Y.1    Cole, K.2    Altman, S.3
  • 25
    • 24044530426 scopus 로고    scopus 로고
    • Lead(II) cleavage analysis of RNase P RNA in vivo
    • Lindell, M., Brännvall, M., Wagner, E.G., and Kirsebom, L.A. 2005. Lead(II) cleavage analysis of RNase P RNA in vivo. RNA 11: 1348-1354.
    • (2005) RNA , vol.11 , pp. 1348-1354
    • Lindell, M.1    Brännvall, M.2    Wagner, E.G.3    Kirsebom, L.A.4
  • 27
    • 0025826411 scopus 로고
    • Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli
    • Peck-Miller, K.A. and Altman, S. 1991. Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli. J. Mol. Biol. 221: 1-5.
    • (1991) J. Mol. Biol. , vol.221 , pp. 1-5
    • Peck-Miller, K.A.1    Altman, S.2
  • 29
    • 0029004295 scopus 로고
    • High-level expression of soluble recombinant RNase P protein from Escherichia coli
    • Rivera-León, R., Green, C.J., and Vold, B.S. 1995. High-level expression of soluble recombinant RNase P protein from Escherichia coli. J. Bacteriol. 177: 2564-2566.
    • (1995) J. Bacteriol. , vol.177 , pp. 2564-2566
    • Rivera-León, R.1    Green, C.J.2    Vold, B.S.3
  • 30
    • 13244259185 scopus 로고    scopus 로고
    • Combined inactivation and expression strategy to study gene function under physiological conditions: Application to identification of new Escherichia coli adhesins
    • Roux, A., Beloin, C., and Ghigo, J.M. 2005. Combined inactivation and expression strategy to study gene function under physiological conditions: Application to identification of new Escherichia coli adhesins. J. Bacteriol. 187: 1001-1013.
    • (2005) J. Bacteriol. , vol.187 , pp. 1001-1013
    • Roux, A.1    Beloin, C.2    Ghigo, J.M.3
  • 31
    • 0032961202 scopus 로고    scopus 로고
    • Ribonuclease P: The diversity of a ubiquitous RNA processing enzyme
    • Schön, A. 1999. Ribonuclease P: The diversity of a ubiquitous RNA processing enzyme. FEMS Microbiol. Rev. 23: 391-406.
    • (1999) FEMS Microbiol. Rev. , vol.23 , pp. 391-406
    • Schön, A.1
  • 32
    • 0029903905 scopus 로고    scopus 로고
    • Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate
    • Svärd, S.G., Kagardt, U., and Kirsebom, L.A. 1996. Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate. RNA 2: 463-472.
    • (1996) RNA , vol.2 , pp. 463-472
    • Svärd, S.G.1    Kagardt, U.2    Kirsebom, L.A.3
  • 33
    • 0021919826 scopus 로고
    • A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes
    • Tabor, S. and Richardson, C.C. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. 82: 1074-1078.
    • (1985) Proc. Natl. Acad. Sci. , vol.82 , pp. 1074-1078
    • Tabor, S.1    Richardson, C.C.2
  • 35
    • 0025166185 scopus 로고
    • Complementation of an RNase P RNA (rnpB) gene deletion in Escherichia coli by homologous genes from distantly related eubacteria
    • Waugh, D.S. and Pace, N.R. 1990. Complementation of an RNase P RNA (rnpB) gene deletion in Escherichia coli by homologous genes from distantly related eubacteria. J. Bacteriol. 172: 6316-6321.
    • (1990) J. Bacteriol. , vol.172 , pp. 6316-6321
    • Waugh, D.S.1    Pace, N.R.2
  • 36
    • 0029958503 scopus 로고    scopus 로고
    • Slow folding kinetics of RNase P RNA
    • Zarrinkar, P.P., Wang, J., and Williamson, J.R. 1996. Slow folding kinetics of RNase P RNA. RNA 2: 564-573.
    • (1996) RNA , vol.2 , pp. 564-573
    • Zarrinkar, P.P.1    Wang, J.2    Williamson, J.R.3


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