-
1
-
-
0001636640
-
Recent studies of RNase P
-
Söll D, RajBhandary UL, eds. Washington, DC: ASM Press
-
Altman S, Kirsebom LA, Talbot S. 1995. Recent studies of RNase P. In: Söll D, RajBhandary UL, eds. tRNA structure, biosynthesis, and function. Washington, DC: ASM Press. pp 67-78.
-
(1995)
tRNA Structure, Biosynthesis, and Function
, pp. 67-78
-
-
Altman, S.1
Kirsebom, L.A.2
Talbot, S.3
-
2
-
-
0029903452
-
The ion-induced folding of the hammerhead ribozyme: Core sequence changes that perturb folding into the active conformation
-
Bassi GS, Murchie AIH, Lilley DMJ. 1996. The ion-induced folding of the hammerhead ribozyme: Core sequence changes that perturb folding into the active conformation. RNA 2:756-768.
-
(1996)
RNA
, vol.2
, pp. 756-768
-
-
Bassi, G.S.1
Murchie, A.I.H.2
Lilley, D.M.J.3
-
3
-
-
0029939184
-
The ribonuclease P database
-
Brown JW. 1996. The ribonuclease P database. Nucleic Acids Res 24:236-237.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 236-237
-
-
Brown, J.W.1
-
4
-
-
0022433369
-
Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA
-
Brown RS, Dewan JC, Klug A. 1985. Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry 24:4785-4801.
-
(1985)
Biochemistry
, vol.24
, pp. 4785-4801
-
-
Brown, R.S.1
Dewan, J.C.2
Klug, A.3
-
5
-
-
0030587890
-
Metal-binding sites in the major groove of a large ribozyme domain
-
Cate JH, Doudna JA. 1996. Metal-binding sites in the major groove of a large ribozyme domain. Structure 4:1221-1229.
-
(1996)
Structure
, vol.4
, pp. 1221-1229
-
-
Cate, J.H.1
Doudna, J.A.2
-
6
-
-
0029820625
-
Crystal structure of a group I intron ribozyme domain: Principles of RNa packing
-
Cate JH, Gooding AR, Podell E, Zhou K, Golden BL, Kundrot CE, Cech TR, Doudna JA. 1996. Crystal structure of a group I intron ribozyme domain: Principles of RNA packing. Science 273:1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
7
-
-
0030929889
-
A magnesium ion core at the heart of a ribozyme domain
-
Cate JH, Hanna RL, Doudna JA. 1997. A magnesium ion core at the heart of a ribozyme domain. Nature Struct Biol 4:553-558.
-
(1997)
Nature Struct Biol
, vol.4
, pp. 553-558
-
-
Cate, J.H.1
Hanna, R.L.2
Doudna, J.A.3
-
8
-
-
0028123551
-
Lead-ion-induced cleavage of RNase P RNA
-
Ciesiolka J, Hardt WD, Schlegel J, Erdmann VA, Hartmann RK. 1994. Lead-ion-induced cleavage of RNase P RNA. Eur J Biochem 219:49-56.
-
(1994)
Eur J Biochem
, vol.219
, pp. 49-56
-
-
Ciesiolka, J.1
Hardt, W.D.2
Schlegel, J.3
Erdmann, V.A.4
Hartmann, R.K.5
-
9
-
-
0029017988
-
Enzymatic synthesis of 2′-modified nucleic acids: Identification of important phosphate and ribose moieties in RNase P substrates
-
Conrad F, Hanne A, Gaur RK, Krupp G. 1995. Enzymatic synthesis of 2′-modified nucleic acids: Identification of important phosphate and ribose moieties in RNase P substrates. Nucleic Acids Res 23:1845-1853.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 1845-1853
-
-
Conrad, F.1
Hanne, A.2
Gaur, R.K.3
Krupp, G.4
-
10
-
-
0030856333
-
Metals, motifs, and recognition in the crystal structure of a 5S rRNa domain
-
Correll CC, Freeborn B, Moore PB, Steitz TA. 1997. Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain. Cell 91:705-712.
-
(1997)
Cell
, vol.91
, pp. 705-712
-
-
Correll, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
11
-
-
0023665268
-
Probing the structure of RNAs in solution
-
Ehresmann C, Baudin F, Mougel M, Romby P, Ebel JP, Ehresmann B. 1987. Probing the structure of RNAs in solution. Nucleic Acids Res 15:9109-9128.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 9109-9128
-
-
Ehresmann, C.1
Baudin, F.2
Mougel, M.3
Romby, P.4
Ebel, J.P.5
Ehresmann, B.6
-
12
-
-
0030918657
-
Ribonuclease P RNA: Models of the 15/16 bulge from Escherichia coli and the P15 stem loop of Bacillus subtilis
-
Easterwood TR, Harvey SC. 1997. Ribonuclease P RNA: Models of the 15/16 bulge from Escherichia coli and the P15 stem loop of Bacillus subtilis. RNA 3:577-585.
-
(1997)
RNA
, vol.3
, pp. 577-585
-
-
Easterwood, T.R.1
Harvey, S.C.2
-
13
-
-
0029882572
-
The NMR structure of 31mer RNA domain of Escherichia coli RNase P RNA using its non-uniformly deuterium labelled counterpart [the "NMR-window" concept]
-
Glemarec C, Kufel J, Földesi A, Maltseva T, Sandström A, Kirsebom LA, Chattopadhyaya J. 1996. The NMR structure of 31mer RNA domain of Escherichia coli RNase P RNA using its non-uniformly deuterium labelled counterpart [the "NMR-window" concept]. Nucleic Acids Res 24:2022-2035.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2022-2035
-
-
Glemarec, C.1
Kufel, J.2
Földesi, A.3
Maltseva, T.4
Sandström, A.5
Kirsebom, L.A.6
Chattopadhyaya, J.7
-
14
-
-
0028903816
-
Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA
-
Grasby JA, Mersmann K, Singh M, Gait MJ. 1995. Purine functional groups in essential residues of the hairpin ribozyme required for catalytic cleavage of RNA. Biochemistry 34:4068-4076.
-
(1995)
Biochemistry
, vol.34
, pp. 4068-4076
-
-
Grasby, J.A.1
Mersmann, K.2
Singh, M.3
Gait, M.J.4
-
15
-
-
0029082074
-
Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR
-
Greenbaum NL, Radhakrishnan I, Hirsh D, Patel DJ. 1995. Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR. J Mol Biol 252:314-327.
-
(1995)
J Mol Biol
, vol.252
, pp. 314-327
-
-
Greenbaum, N.L.1
Radhakrishnan, I.2
Hirsh, D.3
Patel, D.J.4
-
16
-
-
0021766667
-
Structure in solution of M1 RNA, the catalytic subunit of ribonuclease P from Escherichia coli
-
Guerrier-Takada C, Altman S. 1984. Structure in solution of M1 RNA, the catalytic subunit of ribonuclease P from Escherichia coli. Biochemistry 23:6327-6334.
-
(1984)
Biochemistry
, vol.23
, pp. 6327-6334
-
-
Guerrier-Takada, C.1
Altman, S.2
-
17
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. 1983. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35:849-857.
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
19
-
-
0017361887
-
A crystallographic study of metal-binding to yeast phenylalanine transfer RNA
-
Jack A, Ladner JE, Rhodes D, Brown RS, Klug A. 1977. A crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J Mol Biol 111:315-328.
-
(1977)
J Mol Biol
, vol.111
, pp. 315-328
-
-
Jack, A.1
Ladner, J.E.2
Rhodes, D.3
Brown, R.S.4
Klug, A.5
-
20
-
-
0018627368
-
Diastereomers of the nucleoside phosphorothioates as probes of the structure of the metal nucleotide substrates and of the nucleotide binding site of yeast hexokinase
-
Jaffe EK, Cohn M. 1979. Diastereomers of the nucleoside phosphorothioates as probes of the structure of the metal nucleotide substrates and of the nucleotide binding site of yeast hexokinase. J Biol Chem 254:10839-10845.
-
(1979)
J Biol Chem
, vol.254
, pp. 10839-10845
-
-
Jaffe, E.K.1
Cohn, M.2
-
21
-
-
0025992237
-
Site-specific cleavage by metal ion co-factors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli
-
Kazakov S, Altman S. 1991. Site-specific cleavage by metal ion co-factors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli. Proc Natl Acad Sci USA 88:9193-9197.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 9193-9197
-
-
Kazakov, S.1
Altman, S.2
-
22
-
-
0029131905
-
RNase P - A "Scarlet Pimpernel."
-
Kirsebom LA. 1995. RNase P - A "Scarlet Pimpernel." Mol Microbiol 17:411-420.
-
(1995)
Mol Microbiol
, vol.17
, pp. 411-420
-
-
Kirsebom, L.A.1
-
23
-
-
0027228358
-
Identification of a region within M1 RNa of Escherichia coli RNase P RNa important for the location of the cleavage site on a wild-type tRNa precursor
-
Kirsebom LA, Svärd SG. 1993. Identification of a region within M1 RNA of Escherichia coli RNase P RNA important for the location of the cleavage site on a wild-type tRNA precursor. J Mol Biol 231:594-604.
-
(1993)
J Mol Biol
, vol.231
, pp. 594-604
-
-
Kirsebom, L.A.1
Svärd, S.G.2
-
24
-
-
0027973546
-
Base pairing between Escherichia coli RNase P RNA and its substrate
-
Kirsebom LA, Svärd SG. 1994. Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J 13:4870-4876.
-
(1994)
EMBO J
, vol.13
, pp. 4870-4876
-
-
Kirsebom, L.A.1
Svärd, S.G.2
-
25
-
-
0025601901
-
Protection from chemical modifications of nucleotides in complexes of M1 RNA, the catalytic subunit of RNase P from E. coli, and tRNA precursors
-
Knap AK, Wesolowski D, Altman S. 1990. Protection from chemical modifications of nucleotides in complexes of M1 RNA, the catalytic subunit of RNase P from E. coli, and tRNA precursors. Biochimie 72:779-790.
-
(1990)
Biochimie
, vol.72
, pp. 779-790
-
-
Knap, A.K.1
Wesolowski, D.2
Altman, S.3
-
26
-
-
0030589091
-
Residues in Escherichia coli RNase P RNA important for cleavage site selection and divalent metal ion binding
-
Kufel J, Kirsebom LA. 1996. Residues in Escherichia coli RNase P RNA important for cleavage site selection and divalent metal ion binding. J Mol Biol 263:685-698.
-
(1996)
J Mol Biol
, vol.263
, pp. 685-698
-
-
Kufel, J.1
Kirsebom, L.A.2
-
27
-
-
0028146083
-
Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA
-
LaGrandeur TE, Hüttenhofer A, Noller HF, Pace NR. 1994. Phylogenetic comparative chemical footprint analysis of the interaction between ribonuclease P RNA and tRNA. EMBO J 13:3945-3952.
-
(1994)
EMBO J
, vol.13
, pp. 3945-3952
-
-
LaGrandeur, T.E.1
Hüttenhofer, A.2
Noller, H.F.3
Pace, N.R.4
-
29
-
-
0026680843
-
Site-specific modification of pre-mRNA: The 2′ hydroxyl groups at the splice sites
-
Moore MJ, Sharp PA. 1992. Site-specific modification of pre-mRNA: The 2′ hydroxyl groups at the splice sites. Science 256: 992-997.
-
(1992)
Science
, vol.256
, pp. 992-997
-
-
Moore, M.J.1
Sharp, P.A.2
-
30
-
-
0028131972
-
Interaction of the 3′-end of tRNA with ribonuclease P RNA
-
Oh BK, Pace NR. 1994. Interaction of the 3′-end of tRNA with ribonuclease P RNA. Nucleic Acids Res 22:4087-4094.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4087-4094
-
-
Oh, B.K.1
Pace, N.R.2
-
31
-
-
0028962136
-
Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme
-
Pace NR, Brown JW. 1995. Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J Bacteriol 177:1919-1928.
-
(1995)
J Bacteriol
, vol.177
, pp. 1919-1928
-
-
Pace, N.R.1
Brown, J.W.2
-
32
-
-
0019051754
-
Chemical probes for higher-order structure in RNA
-
Peattie DA, Gilbert W. 1980. Chemical probes for higher-order structure in RNA. Proc Natl Acad Sci USA 77:4679-4682.
-
(1980)
Proc Natl Acad Sci USA
, vol.77
, pp. 4679-4682
-
-
Peattie, D.A.1
Gilbert, W.2
-
33
-
-
0028063567
-
Three-dimensional structure of a hammerhead ribozyme
-
Pley HW, Flaherty KM, McKay DB. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature 372:68-74.
-
(1994)
Nature
, vol.372
, pp. 68-74
-
-
Pley, H.W.1
Flaherty, K.M.2
McKay, D.B.3
-
34
-
-
0023953676
-
Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro
-
Sampson JR, Uhlenbeck OC. 1988. Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro. Proc Natl Acad Sci USA 85:1033-1037.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 1033-1037
-
-
Sampson, J.R.1
Uhlenbeck, O.C.2
-
36
-
-
0029073091
-
The crystal structure of an all-RNa hammerhead ribozyme: A proposed mechanism for RNa catalytic cleavage
-
Scott WG, Finch JT, Klug A. 1995. The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81:991-1002.
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
37
-
-
0030476765
-
Capturing the structure of a catalytic RNa intermediate: The hammerhead ribozyme
-
Scott WG, Murray JB, Arnold JRP, Stoddard BL, Klug A. 1996. Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme. Science 274:2065-2069.
-
(1996)
Science
, vol.274
, pp. 2065-2069
-
-
Scott, W.G.1
Murray, J.B.2
Arnold, J.R.P.3
Stoddard, B.L.4
Klug, A.5
-
38
-
-
0024260237
-
Functional domains of the RNA component of ribonuclease P revealed by chemical probing of mutant RNAs
-
Shiraishi H, Shimura Y. 1988. Functional domains of the RNA component of ribonuclease P revealed by chemical probing of mutant RNAs. EMBO J 7:3817-3821.
-
(1988)
EMBO J
, vol.7
, pp. 3817-3821
-
-
Shiraishi, H.1
Shimura, Y.2
-
39
-
-
0031028479
-
A conformational change in the catalytic core of the hammerhead ribozyme upon cleavage of an RNA substrate
-
Simorre JP, Legault P, Hangar AB, Michiels P, Pardi A. 1997. A conformational change in the catalytic core of the hammerhead ribozyme upon cleavage of an RNA substrate. Biochemistry 36:518-525.
-
(1997)
Biochemistry
, vol.36
, pp. 518-525
-
-
Simorre, J.P.1
Legault, P.2
Hangar, A.B.3
Michiels, P.4
Pardi, A.5
-
40
-
-
0029985347
-
The enviroment of two metal ions surrounding the splice site of a group I intron
-
Streicher B, Westhof E, Schroeder R. 1996. The enviroment of two metal ions surrounding the splice site of a group I intron. EMBO J 15:2556-2564.
-
(1996)
EMBO J
, vol.15
, pp. 2556-2564
-
-
Streicher, B.1
Westhof, E.2
Schroeder, R.3
-
41
-
-
0029903905
-
Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate
-
Svärd SG, Kagardt U, Kirsebom LA. 1996. Phylogenetic comparative mutational analysis of the base-pairing between RNase P RNA and its substrate. RNA 2:463-472.
-
(1996)
RNA
, vol.2
, pp. 463-472
-
-
Svärd, S.G.1
Kagardt, U.2
Kirsebom, L.A.3
-
42
-
-
0026497278
-
Several regions of a tRNa precursor determine the Escherichia coli RNase P cleavage site
-
Svärd SG, Kirsebom LA. 1992. Several regions of a tRNA precursor determine the Escherichia coli RNase P cleavage site. J Mol Biol 227:1019-1031.
-
(1992)
J Mol Biol
, vol.227
, pp. 1019-1031
-
-
Svärd, S.G.1
Kirsebom, L.A.2
-
43
-
-
0029827586
-
Interaction between Escherichia coli RNase P and the discriminator base results in slow product release
-
Tallsjö A, Kufel J, Kirsebom LA. 1996. Interaction between Escherichia coli RNase P and the discriminator base results in slow product release. RNA 2:299-307.
-
(1996)
RNA
, vol.2
, pp. 299-307
-
-
Tallsjö, A.1
Kufel, J.2
Kirsebom, L.A.3
-
44
-
-
0029866752
-
Mapping of three dimensions of regions in a catalytic RNa protected from attack by an Fe(II)-EDTa reagent
-
Westhof E, Wesolowski D, Altman S. 1996. Mapping of three dimensions of regions in a catalytic RNA protected from attack by an Fe(II)-EDTA reagent. J Mol Biol 258:600-613.
-
(1996)
J Mol Biol
, vol.258
, pp. 600-613
-
-
Westhof, E.1
Wesolowski, D.2
Altman, S.3
-
45
-
-
0027439912
-
Conformation of loop e from eukaryotic 5S RNA
-
Wimberly B, Varan G, Tinoco I Jr. 1993. Conformation of loop E from eukaryotic 5S RNA. Biochemistry 32:1078-1087.
-
(1993)
Biochemistry
, vol.32
, pp. 1078-1087
-
-
Wimberly, B.1
Varan, G.2
Tinoco I., Jr.3
-
46
-
-
0025748046
-
Synthesis and purification of large amounts of RNA oligonucleotides
-
Wyatt JR, Chastain M, Puglisi JD. 1991. Synthesis and purification of large amounts of RNA oligonucleotides. BioTechniques 11:764-769.
-
(1991)
BioTechniques
, vol.11
, pp. 764-769
-
-
Wyatt, J.R.1
Chastain, M.2
Puglisi, J.D.3
-
47
-
-
0030031397
-
Determining RNA solution structure by segmental isotopic labelling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1
-
Xu J, Lapham J, Crothers DM. 1996. Determining RNA solution structure by segmental isotopic labelling and NMR: Application to Caenorhabditis elegans spliced leader RNA 1. Proc Natl Acad Sci USA 93:44-48.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 44-48
-
-
Xu, J.1
Lapham, J.2
Crothers, D.M.3
-
48
-
-
0027729890
-
Lead-catalyzed cleavage of ribonuclease P RNa as a probe for integrity of tertiary structure
-
Zito K, Hüttenhofer A, Pace NR. 1993. Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure. Nucleic Acids Res 21:5916-5920.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 5916-5920
-
-
Zito, K.1
Hüttenhofer, A.2
Pace, N.R.3
|