메뉴 건너뛰기




Volumn 30, Issue 8, 2006, Pages 666-676

Estimating haplotype relative risks in complex disease from unphased SNPs data in families using a likelihood adjusted for ascertainment

Author keywords

Family data; Haplotypes; Hardy weinberg disequilibrium; Phase ambiguity; Retrospective likelihood; Stochastic expectation maximization algorithm

Indexed keywords

ARTICLE; DISEASE ASSOCIATION; DISEASE PREDISPOSITION; FAMILY; GENETIC ALGORITHM; GENETIC ANALYSIS; GENOTYPE; HAPLOTYPE; HUMAN; INFORMATION PROCESSING; LINKAGE ANALYSIS; MATHEMATICAL ANALYSIS; MATHEMATICAL PARAMETERS; METHODOLOGY; RISK FACTOR; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL MODEL;

EID: 33845185797     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20178     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 24144433440 scopus 로고    scopus 로고
    • Locally-efficient robust estimation of haplotype-disease association in family-based studies
    • Allen SA, Satten GA, Tsiatis AA. 2005. Locally-efficient robust estimation of haplotype-disease association in family-based studies. Biometrika 92:559-571.
    • (2005) Biometrika , vol.92 , pp. 559-571
    • Allen, S.A.1    Satten, G.A.2    Tsiatis, A.A.3
  • 2
    • 4344673452 scopus 로고    scopus 로고
    • Estimating penetrance from family data using a retrospective likelihood when ascertainment depends on genotype and age of onset
    • Carayol J, Bonaiti-Pellie C. 2004. Estimating penetrance from family data using a retrospective likelihood when ascertainment depends on genotype and age of onset. Genet Epidemiol 27:109-117.
    • (2004) Genet Epidemiol , vol.27 , pp. 109-117
    • Carayol, J.1    Bonaiti-Pellie, C.2
  • 3
    • 0002241694 scopus 로고
    • The SEM algorithm: A probabilistic teacher algorithm derived from the EM algorithm for the mixture problem
    • Celeux G, Diebolt J. 1985. The SEM algorithm: a probabilistic teacher algorithm derived from the EM algorithm for the mixture problem. Comp Stat Quart 2:73-82.
    • (1985) Comp Stat Quart , vol.2 , pp. 73-82
    • Celeux, G.1    Diebolt, J.2
  • 4
    • 1842535915 scopus 로고    scopus 로고
    • Properties of case/pseudocontrol analysis for genetic association studies: Effects of recombination, Ascertainment, and multiple affected offspring
    • Cordell HJ. 2004. Properties of case/pseudocontrol analysis for genetic association studies: effects of recombination, Ascertainment, and multiple affected offspring. Genet Epidemiol 26: 186-205.
    • (2004) Genet Epidemiol , vol.26 , pp. 186-205
    • Cordell, H.J.1
  • 5
    • 0036137030 scopus 로고    scopus 로고
    • A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: Application to HLA in type 1 diabetes
    • Cordell HJ, Clayton DG. 2002. A unified stepwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: application to HLA in type 1 diabetes. Am J Hum Genet 70:124-141.
    • (2002) Am J Hum Genet , vol.70 , pp. 124-141
    • Cordell, H.J.1    Clayton, D.G.2
  • 6
    • 1842483890 scopus 로고    scopus 로고
    • Case/pseudocontrol analysis in genetic association studies: A unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions, and parent-of-origin effects
    • Cordell HJ, Baratt BJ, Clayton DG. 2004. Case/pseudocontrol analysis in genetic association studies: a unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions, and parent-of-origin effects. Genet Epidemiol 26:167-185.
    • (2004) Genet Epidemiol , vol.26 , pp. 167-185
    • Cordell, H.J.1    Baratt, B.J.2    Clayton, D.G.3
  • 7
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • Dempster AP, Laird NM, Rubin DB. 1977. Maximum likelihood from incomplete data via the EM algorithm. J K Stat Soc B 39: 1-38.
    • (1977) J K Stat Soc B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 9
    • 0041857847 scopus 로고    scopus 로고
    • Pedigree disequilibrium tests for multilocus haplotypes
    • Dudbridge F. 2003. Pedigree disequilibrium tests for multilocus haplotypes. Genet Epidemiol 25:115-121.
    • (2003) Genet Epidemiol , vol.25 , pp. 115-121
    • Dudbridge, F.1
  • 10
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the Expectation-Maximization algorithm for unphased diploid genotype data
    • Fallin D, Schork N. 2000. Accuracy of haplotype frequency estimation for biallelic loci, via the Expectation-Maximization algorithm for unphased diploid genotype data. Am J Hum Genet 67:947-959.
    • (2000) Am J Hum Genet , vol.67 , pp. 947-959
    • Fallin, D.1    Schork, N.2
  • 11
    • 0038389762 scopus 로고    scopus 로고
    • IBD5 is a general risk factor for inflammatory bowel disease: Replication of association with Crohn disease and identification of a novel association with ulcerative colitis
    • Giallourakis C, Stoll M, Miller K, Hampe J, Lander ES, Daly MJ, Schreiber S, Rioux JD. 2003. IBD5 is a general risk factor for inflammatory bowel disease: replication of association with Crohn disease and identification of a novel association with ulcerative colitis. Am J Hum Genet 73:205-211.
    • (2003) Am J Hum Genet , vol.73 , pp. 205-211
    • Giallourakis, C.1    Stoll, M.2    Miller, K.3    Hampe, J.4    Lander, E.S.5    Daly, M.J.6    Schreiber, S.7    Rioux, J.D.8
  • 12
    • 0033963924 scopus 로고    scopus 로고
    • A note on a conditional-likelihood approach for family-based association studies of candidate genes
    • Hsu L, Ping Zhao L, Aragaki C. 2000. A note on a conditional-likelihood approach for family-based association studies of candidate genes. Hum Hered 50:194-200.
    • (2000) Hum Hered , vol.50 , pp. 194-200
    • Hsu, L.1    Ping Zhao, L.2    Aragaki, C.3
  • 14
    • 0033912293 scopus 로고    scopus 로고
    • Bias and efficiency in family-based gene-characterization studies: Conditional, prospective, retrospective, and joint likelihood
    • Kraft P, Thomas DC. 2000. Bias and efficiency in family-based gene-characterization studies: conditional, prospective, retrospective, and joint likelihood. Am J Hum Genet 66: 1119-1131.
    • (2000) Am J Hum Genet , vol.66 , pp. 1119-1131
    • Kraft, P.1    Thomas, D.C.2
  • 16
    • 0001044972 scopus 로고
    • Finding the observed information matrix when using the EM algorithm
    • Louis T. 1982. Finding the observed information matrix when using the EM algorithm. J R Stat Soc 44:226-233.
    • (1982) J R Stat Soc , vol.44 , pp. 226-233
    • Louis, T.1
  • 18
    • 12344261638 scopus 로고    scopus 로고
    • Parental phenotypes in family-based association analysis
    • Purcell S, Sham P, Daly MJ. 2005. Parental phenotypes in family-based association analysis. Am J Hum Genet 76: 249-259.
    • (2005) Am J Hum Genet , vol.76 , pp. 249-259
    • Purcell, S.1    Sham, P.2    Daly, M.J.3
  • 20
    • 0029956803 scopus 로고    scopus 로고
    • General score tests for associations of genetic markers with disease using cases and their parents
    • Schaid DJ. 1996. General score tests for associations of genetic markers with disease using cases and their parents. Genet Epidemiol 13:423-449.
    • (1996) Genet Epidemiol , vol.13 , pp. 423-449
    • Schaid, D.J.1
  • 21
    • 10044294770 scopus 로고    scopus 로고
    • Evaluating associations of haplotypes with traits
    • Schaid DJ. 2004a. Evaluating associations of haplotypes with traits. Genet Epidemiol 24:348-364.
    • (2004) Genet Epidemiol , vol.24 , pp. 348-364
    • Schaid, D.J.1
  • 22
    • 1642330931 scopus 로고    scopus 로고
    • Linkage disequilibrium testing when linkage phase is unknown
    • Schaid DJ. 2004b. Linkage disequilibrium testing when linkage phase is unknown. Genetics 166:505-512.
    • (2004) Genetics , vol.166 , pp. 505-512
    • Schaid, D.J.1
  • 23
    • 0025903577 scopus 로고
    • On estimating HLA/disease association with application to a study of aplastic anemia
    • Self SG, Longton G, Kopecky KJ, Liang KY. 1991. On estimating HLA/disease association with application to a study of aplastic anemia. Biometrics 47:53-61.
    • (1991) Biometrics , vol.47 , pp. 53-61
    • Self, S.G.1    Longton, G.2    Kopecky, K.J.3    Liang, K.Y.4
  • 24
    • 0027377799 scopus 로고
    • Transmission test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDM)
    • Spielman RS, McGinnis RE, Ewens WJ. 1993. Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 52:506-516.
    • (1993) Am J Hum Genet , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 25
    • 1642313766 scopus 로고    scopus 로고
    • A new algorithm for haplotype-based association analysis: The Stochastic-EM algorithm
    • Tregouet DA, Escolano S, Tiret L, Mallet A, Golmard JL. 2004. A new algorithm for haplotype-based association analysis: the Stochastic-EM algorithm. Ann Hum Genet 68:165-177.
    • (2004) Ann Hum Genet , vol.68 , pp. 165-177
    • Tregouet, D.A.1    Escolano, S.2    Tiret, L.3    Mallet, A.4    Golmard, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.