-
1
-
-
3042732096
-
Directed evolution of nucleic acid enzymes
-
Joyce G.F. Directed evolution of nucleic acid enzymes. Annu Rev Biochem 73 (2004) 791-836
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 791-836
-
-
Joyce, G.F.1
-
2
-
-
0028191743
-
All you wanted to know about SELEX
-
Klug S., and Famulok M. All you wanted to know about SELEX. Mol Biol Reports 20 (1994) 97-107
-
(1994)
Mol Biol Reports
, vol.20
, pp. 97-107
-
-
Klug, S.1
Famulok, M.2
-
3
-
-
23944508560
-
A ribozyme for the aldol reaction
-
Fusz S., Eisenfuhr A., Srivatsan S.G., Heckel A., and Famulok M. A ribozyme for the aldol reaction. Chem Biol 12 (2005) 941-950
-
(2005)
Chem Biol
, vol.12
, pp. 941-950
-
-
Fusz, S.1
Eisenfuhr, A.2
Srivatsan, S.G.3
Heckel, A.4
Famulok, M.5
-
4
-
-
0030963855
-
RNA-catalysed carbon-carbon bond formation
-
Tarasow T.M., Tarasow S.L., and Eaton B.E. RNA-catalysed carbon-carbon bond formation. Nature 389 (1997) 54-57
-
(1997)
Nature
, vol.389
, pp. 54-57
-
-
Tarasow, T.M.1
Tarasow, S.L.2
Eaton, B.E.3
-
5
-
-
0041629325
-
A versatile tRNA aminoacylation catalyst based on RNA
-
Murakami H., Saito H., and Suga H. A versatile tRNA aminoacylation catalyst based on RNA. Chem Biol 10 (2003) 655-662
-
(2003)
Chem Biol
, vol.10
, pp. 655-662
-
-
Murakami, H.1
Saito, H.2
Suga, H.3
-
6
-
-
33646044708
-
A highly flexible tRNA acylation method for non-natural polypeptide synthesis
-
A general RNA-based catalyst for the preparation of aminoacylated tRNAs carrying unnatural amino acids. This technology might allow one to create large libraries of unnatural peptides and proteins in vitro with improved properties.
-
Murakami H., Ohta A., Ashigai H., and Suga H. A highly flexible tRNA acylation method for non-natural polypeptide synthesis. Nat Methods 3 (2006) 357-359. A general RNA-based catalyst for the preparation of aminoacylated tRNAs carrying unnatural amino acids. This technology might allow one to create large libraries of unnatural peptides and proteins in vitro with improved properties.
-
(2006)
Nat Methods
, vol.3
, pp. 357-359
-
-
Murakami, H.1
Ohta, A.2
Ashigai, H.3
Suga, H.4
-
7
-
-
0032564346
-
Ribosome display efficiently selects and evolves high-affinity antibodies in vitro from immune libraries
-
Hanes J., Jermutus L., Weber-Bornhauser S., Bosshard H.R., and Pluckthun A. Ribosome display efficiently selects and evolves high-affinity antibodies in vitro from immune libraries. Proc Natl Acad Sci USA 95 (1998) 14130-14135
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 14130-14135
-
-
Hanes, J.1
Jermutus, L.2
Weber-Bornhauser, S.3
Bosshard, H.R.4
Pluckthun, A.5
-
8
-
-
0030974119
-
In vitro selection and evolution of functional proteins by using ribosome display
-
Hanes J., and Pluckthun A. In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA 94 (1997) 4937-4942
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 4937-4942
-
-
Hanes, J.1
Pluckthun, A.2
-
9
-
-
0030817279
-
RNA-peptide fusions for the in vitro selection of peptides and proteins
-
Roberts R.W., and Szostak J.W. RNA-peptide fusions for the in vitro selection of peptides and proteins. Proc Natl Acad Sci USA 94 (1997) 12297-12302
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12297-12302
-
-
Roberts, R.W.1
Szostak, J.W.2
-
10
-
-
0035957374
-
The use of mRNA display to select high-affinity protein-binding peptides
-
Wilson D.S., Keefe A.D., and Szostak J.W. The use of mRNA display to select high-affinity protein-binding peptides. Proc Natl Acad Sci USA 98 (2001) 3750-3755
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3750-3755
-
-
Wilson, D.S.1
Keefe, A.D.2
Szostak, J.W.3
-
11
-
-
28044468397
-
Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization
-
The authors demonstrate a clever multiple-turnover selection using in vitro compartmentalization to evolve ribozymes. This opens the door to similar types of selection on both RNA and protein catalysts.
-
Agresti J.J., Kelly B.T., Jaschke A., and Griffiths A.D. Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization. Proc Natl Acad Sci USA 102 (2005) 16170-16175. The authors demonstrate a clever multiple-turnover selection using in vitro compartmentalization to evolve ribozymes. This opens the door to similar types of selection on both RNA and protein catalysts.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 16170-16175
-
-
Agresti, J.J.1
Kelly, B.T.2
Jaschke, A.3
Griffiths, A.D.4
-
12
-
-
0033102314
-
A small catalytic RNA motif with Diels-alderase activity
-
Seelig B., and Jaschke A. A small catalytic RNA motif with Diels-alderase activity. Chem Biol 6 (1999) 167-176
-
(1999)
Chem Biol
, vol.6
, pp. 167-176
-
-
Seelig, B.1
Jaschke, A.2
-
13
-
-
25844472658
-
Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization
-
Levy M., Griswold K.E., and Ellington A.D. Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization. RNA 11 (2005) 1555-1562
-
(2005)
RNA
, vol.11
, pp. 1555-1562
-
-
Levy, M.1
Griswold, K.E.2
Ellington, A.D.3
-
14
-
-
0020373595
-
Nucleic acid junctions and lattices
-
Seeman N.C. Nucleic acid junctions and lattices. J Theor Biol 99 (1982) 237-247
-
(1982)
J Theor Biol
, vol.99
, pp. 237-247
-
-
Seeman, N.C.1
-
15
-
-
16544369072
-
Materials science. Nucleic acid nanotechnology
-
Yan H. Materials science. Nucleic acid nanotechnology. Science 306 (2004) 2048-2049
-
(2004)
Science
, vol.306
, pp. 2048-2049
-
-
Yan, H.1
-
16
-
-
10844292641
-
Translation of DNA signals into polymer assembly instructions
-
Liao S., and Seeman N.C. Translation of DNA signals into polymer assembly instructions. Science 306 (2004) 2072-2074
-
(2004)
Science
, vol.306
, pp. 2072-2074
-
-
Liao, S.1
Seeman, N.C.2
-
17
-
-
10844257474
-
Building programmable jigsaw puzzles with RNA
-
Chworos A., Severcan I., Koyfman A.Y., Weinkam P., Oroudjev E., Hansma H.G., and Jaeger L. Building programmable jigsaw puzzles with RNA. Science 306 (2004) 2068-2072
-
(2004)
Science
, vol.306
, pp. 2068-2072
-
-
Chworos, A.1
Severcan, I.2
Koyfman, A.Y.3
Weinkam, P.4
Oroudjev, E.5
Hansma, H.G.6
Jaeger, L.7
-
18
-
-
4744366732
-
A unidirectional DNA walker that moves autonomously along a track
-
Yin P., Yan H., Daniell X.G., Turberfield A.J., and Reif J.H. A unidirectional DNA walker that moves autonomously along a track. Angew Chem Int Ed Engl 43 (2004) 4906-4911
-
(2004)
Angew Chem Int Ed Engl
, vol.43
, pp. 4906-4911
-
-
Yin, P.1
Yan, H.2
Daniell, X.G.3
Turberfield, A.J.4
Reif, J.H.5
-
19
-
-
22744459539
-
Aptamer-directed self-assembly of protein arrays on a DNA nanostructure
-
Liu Y., Lin C., Li H., and Yan H. Aptamer-directed self-assembly of protein arrays on a DNA nanostructure. Angew Chem Int Ed Engl 44 (2005) 4333-4338
-
(2005)
Angew Chem Int Ed Engl
, vol.44
, pp. 4333-4338
-
-
Liu, Y.1
Lin, C.2
Li, H.3
Yan, H.4
-
20
-
-
29044448418
-
Self-assembly of symmetric finite-size DNA nanoarrays
-
Liu Y., Ke Y., and Yan H. Self-assembly of symmetric finite-size DNA nanoarrays. J Am Chem Soc 127 (2005) 17140-17141
-
(2005)
J Am Chem Soc
, vol.127
, pp. 17140-17141
-
-
Liu, Y.1
Ke, Y.2
Yan, H.3
-
21
-
-
29344461263
-
Self-assembling a molecular pegboard
-
Lund K., Liu Y., Lindsay S., and Yan H. Self-assembling a molecular pegboard. J Am Chem Soc 127 (2005) 17606-17607
-
(2005)
J Am Chem Soc
, vol.127
, pp. 17606-17607
-
-
Lund, K.1
Liu, Y.2
Lindsay, S.3
Yan, H.4
-
22
-
-
31444440039
-
DNA-templated self-assembly of two-dimensional and periodical gold nanoparticle arrays
-
Sharma J., Chhabra R., Liu Y., Ke Y., and Yan H. DNA-templated self-assembly of two-dimensional and periodical gold nanoparticle arrays. Angew Chem Int Ed Engl 45 (2006) 730-735
-
(2006)
Angew Chem Int Ed Engl
, vol.45
, pp. 730-735
-
-
Sharma, J.1
Chhabra, R.2
Liu, Y.3
Ke, Y.4
Yan, H.5
-
23
-
-
1342325559
-
A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron
-
Programmed assembly of a large DNA molecule into an octahedron.
-
Shih W.M., Quispe J.D., and Joyce G.F. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature 427 (2004) 618-621. Programmed assembly of a large DNA molecule into an octahedron.
-
(2004)
Nature
, vol.427
, pp. 618-621
-
-
Shih, W.M.1
Quispe, J.D.2
Joyce, G.F.3
-
24
-
-
28844463033
-
Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication
-
Goodman R.P., Schaap I.A., Tardin C.F., Erben C.M., Berry R.M., Schmidt C.F., and Turberfield A.J. Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication. Science 310 (2005) 1661-1665
-
(2005)
Science
, vol.310
, pp. 1661-1665
-
-
Goodman, R.P.1
Schaap, I.A.2
Tardin, C.F.3
Erben, C.M.4
Berry, R.M.5
Schmidt, C.F.6
Turberfield, A.J.7
-
25
-
-
33645028600
-
Folding DNA to create nanoscale shapes and patterns
-
A general method for the creation of DNA-based two-dimensional shapes using computationally design oligonucleotide 'staples'. In theory, any nanoscale shape can be computationally programmed using the appropriately design sequences.
-
Rothemund P.W. Folding DNA to create nanoscale shapes and patterns. Nature 440 (2006) 297-302. A general method for the creation of DNA-based two-dimensional shapes using computationally design oligonucleotide 'staples'. In theory, any nanoscale shape can be computationally programmed using the appropriately design sequences.
-
(2006)
Nature
, vol.440
, pp. 297-302
-
-
Rothemund, P.W.1
-
26
-
-
3042741121
-
Engineered riboregulators enable post-transcriptional control of gene expression
-
The authors report the creation of cis and trans RNA-based post-translational gene control elements inspired by natural mechanisms. Such an approach might be applied to specifically regulate any gene inside of a cell.
-
Isaacs F.J., Dwyer D.J., Ding C., Pervouchine D.D., Cantor C.R., and Collins J.J. Engineered riboregulators enable post-transcriptional control of gene expression. Nat Biotechnol 22 (2004) 841-847. The authors report the creation of cis and trans RNA-based post-translational gene control elements inspired by natural mechanisms. Such an approach might be applied to specifically regulate any gene inside of a cell.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 841-847
-
-
Isaacs, F.J.1
Dwyer, D.J.2
Ding, C.3
Pervouchine, D.D.4
Cantor, C.R.5
Collins, J.J.6
-
27
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
Winkler W., Nahvi A., and Breaker R.R. Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression. Nature 419 (2002) 952-956
-
(2002)
Nature
, vol.419
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
28
-
-
27144527479
-
Regulation of bacterial gene expression by riboswitches
-
Winkler W.C., and Breaker R.R. Regulation of bacterial gene expression by riboswitches. Annu Rev Microbiol 59 (2005) 487-517
-
(2005)
Annu Rev Microbiol
, vol.59
, pp. 487-517
-
-
Winkler, W.C.1
Breaker, R.R.2
-
29
-
-
2542601538
-
A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo
-
Suess B., Fink B., Berens C., Stentz R., and Hillen W. A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo. Nucleic Acids Res 32 (2004) 1610-1614
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1610-1614
-
-
Suess, B.1
Fink, B.2
Berens, C.3
Stentz, R.4
Hillen, W.5
-
30
-
-
0037388001
-
Conditional gene expression by controlling translation with tetracycline-binding aptamers
-
Suess B., Hanson S., Berens C., Fink B., Schroeder R., and Hillen W. Conditional gene expression by controlling translation with tetracycline-binding aptamers. Nucleic Acids Res 31 (2003) 1853-1858
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1853-1858
-
-
Suess, B.1
Hanson, S.2
Berens, C.3
Fink, B.4
Schroeder, R.5
Hillen, W.6
-
31
-
-
0141677751
-
Tetracycline-aptamer-mediated translational regulation in yeast
-
Hanson S., Berthelot K., Fink B., McCarthy J.E., and Suess B. Tetracycline-aptamer-mediated translational regulation in yeast. Mol Microbiol 49 (2003) 1627-1637
-
(2003)
Mol Microbiol
, vol.49
, pp. 1627-1637
-
-
Hanson, S.1
Berthelot, K.2
Fink, B.3
McCarthy, J.E.4
Suess, B.5
-
32
-
-
21444457242
-
Programmable ligand-controlled riboregulators of eukaryotic gene expression
-
Bayer T.S., and Smolke C.D. Programmable ligand-controlled riboregulators of eukaryotic gene expression. Nat Biotechnol 23 (2005) 337-343
-
(2005)
Nat Biotechnol
, vol.23
, pp. 337-343
-
-
Bayer, T.S.1
Smolke, C.D.2
-
33
-
-
27944493648
-
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes
-
Penchovsky R., and Breaker R.R. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes. Nat Biotechnol 23 (2005) 1424-1433
-
(2005)
Nat Biotechnol
, vol.23
, pp. 1424-1433
-
-
Penchovsky, R.1
Breaker, R.R.2
-
34
-
-
0037154986
-
Ribosome structure and the mechanism of translation
-
Ramakrishnan V. Ribosome structure and the mechanism of translation. Cell 108 (2002) 557-572
-
(2002)
Cell
, vol.108
, pp. 557-572
-
-
Ramakrishnan, V.1
-
35
-
-
24044543111
-
A network of orthogonal ribosome x mRNA pairs
-
The creation of multiple mutually orthogonal ribosome•mRNA pairs for independent regulation of gene expression.
-
Rackham O., and Chin J.W. A network of orthogonal ribosome x mRNA pairs. Nat Chem Biol 1 (2005) 159-166. The creation of multiple mutually orthogonal ribosome•mRNA pairs for independent regulation of gene expression.
-
(2005)
Nat Chem Biol
, vol.1
, pp. 159-166
-
-
Rackham, O.1
Chin, J.W.2
-
36
-
-
33646441026
-
Functional epitopes at the ribosome subunit interface
-
Rackham O., Wang K., and Chin J.W. Functional epitopes at the ribosome subunit interface. Nat Chem Biol 2 (2006) 254-258
-
(2006)
Nat Chem Biol
, vol.2
, pp. 254-258
-
-
Rackham, O.1
Wang, K.2
Chin, J.W.3
-
37
-
-
29344453148
-
Cellular logic with orthogonal ribosomes
-
Rackham O., and Chin J.W. Cellular logic with orthogonal ribosomes. J Am Chem Soc 127 (2005) 17584-17585
-
(2005)
J Am Chem Soc
, vol.127
, pp. 17584-17585
-
-
Rackham, O.1
Chin, J.W.2
-
38
-
-
11144247743
-
Accurate multiplex gene synthesis from programmable DNA microchips
-
Tian J., Gong H., Sheng N., Zhou X., Gulari E., Gao X., and Church G. Accurate multiplex gene synthesis from programmable DNA microchips. Nature 432 (2004) 1050-1054
-
(2004)
Nature
, vol.432
, pp. 1050-1054
-
-
Tian, J.1
Gong, H.2
Sheng, N.3
Zhou, X.4
Gulari, E.5
Gao, X.6
Church, G.7
-
39
-
-
28644442082
-
Correcting errors in synthetic DNA through consensus shuffling
-
Binkowski B.F., Richmond K.E., Kaysen J., Sussman M.R., and Belshaw P.J. Correcting errors in synthetic DNA through consensus shuffling. Nucleic Acids Res 33 (2005) e55
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Binkowski, B.F.1
Richmond, K.E.2
Kaysen, J.3
Sussman, M.R.4
Belshaw, P.J.5
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