-
1
-
-
0035902995
-
Cell cycle regulation of myosin-V by calcium/calmodulin-dependent protein kinase II
-
Karcher, R. L., Roland, J. T., Zappacosta, F., Huddleston, M. J., Annan, R. S., Carr, S. A., and Gelfand, V. I. (2001) Cell cycle regulation of myosin-V by calcium/calmodulin-dependent protein kinase II. Science 293, 1317-1320
-
(2001)
Science
, vol.293
, pp. 1317-1320
-
-
Karcher, R.L.1
Roland, J.T.2
Zappacosta, F.3
Huddleston, M.J.4
Annan, R.S.5
Carr, S.A.6
Gelfand, V.I.7
-
2
-
-
0030612012
-
Phosphorylation of Sic1p by G1 Cdk required for its degradation and entry into S phase
-
Verma, R., Annan, R. S., Huddleston, M. J., Carr, S. A., Reynard, G. and Deshaies, R. J. (1997) Phosphorylation of Sic1p by G1 Cdk required for its degradation and entry into S phase. Science 278, 455-560
-
(1997)
Science
, vol.278
, pp. 455-560
-
-
Verma, R.1
Annan, R.S.2
Huddleston, M.J.3
Carr, S.A.4
Reynard, G.5
Deshaies, R.J.6
-
3
-
-
0842346438
-
Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
-
Pawson, T. (2004) Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 116, 191-203
-
(2004)
Cell
, vol.116
, pp. 191-203
-
-
Pawson, T.1
-
4
-
-
1542284074
-
Clb6/Cdc28 and Cdc14 regulate phosphorylation status and cellular localization of Swi6
-
Geymonat, M., Spanos, A., Wells, G. P., Smerdon, S. J., and Sedgwick, S. G. (2004) Clb6/Cdc28 and Cdc14 regulate phosphorylation status and cellular localization of Swi6. Mol. Cell Biol. 6, 2277-2285
-
(2004)
Mol. Cell Biol.
, vol.6
, pp. 2277-2285
-
-
Geymonat, M.1
Spanos, A.2
Wells, G.P.3
Smerdon, S.J.4
Sedgwick, S.G.5
-
5
-
-
0035902180
-
Oncogenic kinase signalling
-
Blume-Jensen, P., and Hunter, T. (2001) Oncogenic kinase signalling. Nature 411, 355-365
-
(2001)
Nature
, vol.411
, pp. 355-365
-
-
Blume-Jensen, P.1
Hunter, T.2
-
6
-
-
0037032835
-
The protein kinase complement of the human genome
-
1012-1912-1934
-
Manning, G. Whyte, D. B., Martinez, R., Hunter, T., and Sudarsanam, S. (2002) The protein kinase complement of the human genome. Science 298, 1012-1912-1934
-
(2002)
Science
, vol.298
-
-
Manning, G.1
Whyte, D.B.2
Martinez, R.3
Hunter, T.4
Sudarsanam, S.5
-
7
-
-
0034383949
-
The regulation of protein function by multisite phosphorylation - A 25 year update
-
Cohen, P. (2000) The regulation of protein function by multisite phosphorylation - a 25 year update. Trends Biochem. Sci. 25, 596-601
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 596-601
-
-
Cohen, P.1
-
8
-
-
0035969559
-
Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication
-
Nash, P., Tang, X., Orlicky, S., Chen, Q., Gertler, F. B., Mendenhall, M. D., Sicheri, F., Pawson, T., and Tyers, M. (2001) Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414, 514-521
-
(2001)
Nature
, vol.414
, pp. 514-521
-
-
Nash, P.1
Tang, X.2
Orlicky, S.3
Chen, Q.4
Gertler, F.B.5
Mendenhall, M.D.6
Sicheri, F.7
Pawson, T.8
Tyers, M.9
-
9
-
-
0033532281
-
Roles of phosphorylation sites in regulating activity of the transcription factor Pho4
-
Komeili, A., and O'Shea, E. K. (1999) Roles of phosphorylation sites in regulating activity of the transcription factor Pho4. Science 284, 977-980
-
(1999)
Science
, vol.284
, pp. 977-980
-
-
Komeili, A.1
O'Shea, E.K.2
-
10
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
11
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
12
-
-
0035886986
-
Peptide mass mapping constrained with stable isotope-tagged peptides for identification of protein mixtures
-
Hunter, T. C., Yang, L., Zhu, H., Majidi, V., Bradbury, E. M., and Chen, X. (2001) Peptide mass mapping constrained with stable isotope-tagged peptides for identification of protein mixtures. Anal. Chem. 73, 4891-4902
-
(2001)
Anal. Chem.
, vol.73
, pp. 4891-4902
-
-
Hunter, T.C.1
Yang, L.2
Zhu, H.3
Majidi, V.4
Bradbury, E.M.5
Chen, X.6
-
13
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y., Huang, K., Cross, F. R., Cowburn, D., and Chait, B. T. (1999) Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. U. S. A. 96, 6591-6596
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
14
-
-
0034582298
-
Proteome analysis using selective incorporation of isotopically labeled amino acids
-
Veenstra, T. D., Martinovic, S., Anderson, G. A., Pasa-Tolic, L., and Smith, R. D. (2000) Proteome analysis using selective incorporation of isotopically labeled amino acids. J. Am. Soc. Mass Spectrum. 11, 78-82
-
(2000)
J. Am. Soc. Mass Spectrum.
, vol.11
, pp. 78-82
-
-
Veenstra, T.D.1
Martinovic, S.2
Anderson, G.A.3
Pasa-Tolic, L.4
Smith, R.D.5
-
15
-
-
8644220590
-
N-terminal isotope tagging strategy for quantitative proteomics: Results-driven analysis of protein abundance changes
-
Zappacosta, F., and Annan, R. S. (2004) N-terminal isotope tagging strategy for quantitative proteomics: results-driven analysis of protein abundance changes. Anal. Chem. 76, 6618-6627
-
(2004)
Anal. Chem.
, vol.76
, pp. 6618-6627
-
-
Zappacosta, F.1
Annan, R.S.2
-
16
-
-
0037417791
-
Quantitation of changes in protein phosphorylation: A simple method based on stable isotope labeling and mass spectrometry
-
Bonenfant, D., Schmelzle, T., Jacinto, E., Crespo, J. L., Mini, T., Hall, M. N., and Jenoe, P. (2003) Quantitation of changes in protein phosphorylation: a simple method based on stable isotope labeling and mass spectrometry. Proc. Natl. Acad. Sci. U. S. A. 100, 880-885
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 880-885
-
-
Bonenfant, D.1
Schmelzle, T.2
Jacinto, E.3
Crespo, J.L.4
Mini, T.5
Hall, M.N.6
Jenoe, P.7
-
17
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. U. S. A. 100, 6940-6945
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
18
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler, A., Olsen, J. V., Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, M., and Jensen, O. N. (2005) Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 4, 310-327
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
Mortensen, P.4
Faergeman, N.J.5
Mann, M.6
Jensen, O.N.7
-
20
-
-
0037458030
-
Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry
-
Salomon, A. R., Ficarro, S. B., Brill, L. M., Brinker, A., Phung, Q. T., Ericson, C., Sauer, K., Brock, A., Horn, D. M., Schultz, P. G., and Peters, E. C. (2003) Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry. Proc. Natl. Acad. Sci. U. S. A. 100, 443-448
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 443-448
-
-
Salomon, A.R.1
Ficarro, S.B.2
Brill, L.M.3
Brinker, A.4
Phung, Q.T.5
Ericson, C.6
Sauer, K.7
Brock, A.8
Horn, D.M.9
Schultz, P.G.10
Peters, E.C.11
-
21
-
-
0033565503
-
Immobilized gallium(III) affinity chromatography of phosphopeptides
-
Posewitz, M. C., and Tempst, P. (1999) Immobilized gallium(III) affinity chromatography of phosphopeptides. Anal. Chem. 71, 2883-2892
-
(1999)
Anal. Chem.
, vol.71
, pp. 2883-2892
-
-
Posewitz, M.C.1
Tempst, P.2
-
22
-
-
21144458164
-
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells
-
Rush, J., Moritz, A., Lee, K. A., Guo, A., Goss, V. L., Spek, E. J., Zhang, H., Zha, X. M., Polakiewicz, R. D., and Comb, M. J. (2005) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotechnol. 23, 94-101
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 94-101
-
-
Rush, J.1
Moritz, A.2
Lee, K.A.3
Guo, A.4
Goss, V.L.5
Spek, E.J.6
Zhang, H.7
Zha, X.M.8
Polakiewicz, R.D.9
Comb, M.J.10
-
23
-
-
0037442315
-
Abundance ratio-dependent proteomic analysis by mass spectrometry
-
Griffin, T. J., Lock, C. M., Li, X. J., Patel, A., Chervetsova, I., Lee, H., Wright, M. E., Ranish, J. A., Chen, S. S., and Aebersold, R. (2003) Abundance ratio-dependent proteomic analysis by mass spectrometry. Anal. Chem. 75, 867-874
-
(2003)
Anal. Chem.
, vol.75
, pp. 867-874
-
-
Griffin, T.J.1
Lock, C.M.2
Li, X.J.3
Patel, A.4
Chervetsova, I.5
Lee, H.6
Wright, M.E.7
Ranish, J.A.8
Chen, S.S.9
Aebersold, R.10
-
24
-
-
1242294364
-
Result-driven strategies for protein identification and quantitation - A way to optimize experimental design and derive reliable results
-
Graber, A., Juhasz, P. S., Khainovski, N., Parker, K. C., Patterson, D. H., and Martin, S. A. (2004) Result-driven strategies for protein identification and quantitation - a way to optimize experimental design and derive reliable results. Proteomics 4, 474-489
-
(2004)
Proteomics
, vol.4
, pp. 474-489
-
-
Graber, A.1
Juhasz, P.S.2
Khainovski, N.3
Parker, K.C.4
Patterson, D.H.5
Martin, S.A.6
-
25
-
-
0030218817
-
Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry
-
Carr, S. A., Huddleston, M. J., and Annan, R. S. (1996) Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry. Anal. Biochem. 239, 180-192
-
(1996)
Anal. Biochem.
, vol.239
, pp. 180-192
-
-
Carr, S.A.1
Huddleston, M.J.2
Annan, R.S.3
-
26
-
-
0030033198
-
Parent ion scans of unseparated peptide mixtures
-
Wilm, M. Neubauer, G., and Mann, M. (1996) Parent ion scans of unseparated peptide mixtures. Anal. Chem. 68, 1-27
-
(1996)
Anal. Chem.
, vol.68
, pp. 1-27
-
-
Wilm, M.1
Neubauer, G.2
Mann, M.3
-
27
-
-
0030059223
-
Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex
-
O'Neill, E. M. Kaffman, A. Jolly, E. R., and O'Shea, E. K. (1994) Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex. Science 271, 209-212
-
(1994)
Science
, vol.271
, pp. 209-212
-
-
O'Neill, E.M.1
Kaffman, A.2
Jolly, E.R.3
O'Shea, E.K.4
-
28
-
-
0032168565
-
Phosphorylation regulates association of the transcription factor Pho4 with its import receptor Pse1/Kap121
-
Kaffman, A. Rank, N. M., and O'Shea, E. K. (1998) Phosphorylation regulates association of the transcription factor Pho4 with its import receptor Pse1/Kap121. Genes Dev. 12, 2673-2683
-
(1998)
Genes Dev.
, vol.12
, pp. 2673-2683
-
-
Kaffman, A.1
Rank, N.M.2
O'Shea, E.K.3
-
29
-
-
0032481048
-
The receptor Msn5 exports the phosphorylated transcription factor Pho4 out of the nucleus
-
Kaffman, A. Rank, N. M., O'Neill, E. M. Huang, L. S., and O'Shea, E. K. (1998) The receptor Msn5 exports the phosphorylated transcription factor Pho4 out of the nucleus. Nature 396, 482-486
-
(1998)
Nature
, vol.396
, pp. 482-486
-
-
Kaffman, A.1
Rank, N.M.2
O'Neill, E.M.3
Huang, L.S.4
O'Shea, E.K.5
-
30
-
-
0030943857
-
Calmodulin modulates the interaction between IQGAP1 and Cdc42. Identification of IQGAP1 by nanoelectrospray tandem mass spectrometry
-
Joyal, J. L., Annan, R. S., Ho, Y. D., Huddleston, M. E., Carr, S. A., Hart, M. J., and Sacks, D. B. (1997) Calmodulin modulates the interaction between IQGAP1 and Cdc42. Identification of IQGAP1 by nanoelectrospray tandem mass spectrometry. J. Biol. Chem. 272, 15419-15425
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15419-15425
-
-
Joyal, J.L.1
Annan, R.S.2
Ho, Y.D.3
Huddleston, M.E.4
Carr, S.A.5
Hart, M.J.6
Sacks, D.B.7
-
31
-
-
0036914002
-
N-terminal peptide labeling strategy for incorporation of isotopic tags: A method for the determination of site-specific absolute phosphorylation stoichiometry
-
Zhang, X. Jin, Q. K. Carr, S. A., and Annan, R. S. (2002) N-terminal peptide labeling strategy for incorporation of isotopic tags: a method for the determination of site-specific absolute phosphorylation stoichiometry. Rapid Commun. Mass Spectrom. 16, 2325-2332
-
(2002)
Rapid Commun. Mass Spectrom.
, vol.16
, pp. 2325-2332
-
-
Zhang, X.1
Jin, Q.K.2
Carr, S.A.3
Annan, R.S.4
-
32
-
-
0031427079
-
The phosphatase system in Saccharomyces cerevisiae
-
Oshima, Y. (1997) The phosphatase system in Saccharomyces cerevisiae. Genes Genet. Syst. 72, 323-334
-
(1997)
Genes Genet. Syst.
, vol.72
, pp. 323-334
-
-
Oshima, Y.1
-
33
-
-
0028207513
-
Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PH085
-
Kaffman, A. Herskowitz, I., Tjian, R., and O'Shea, E. K. (1994) Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PH085. Science 263, 1153-1156
-
(1994)
Science
, vol.263
, pp. 1153-1156
-
-
Kaffman, A.1
Herskowitz, I.2
Tjian, R.3
O'Shea, E.K.4
-
34
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W. Belle, A., Dephoure, N., O'Shea, E. K., and Weissman, J. S. (2003) Global analysis of protein expression in yeast. Nature 425, 737-741
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
35
-
-
33751393314
-
-
Eds. 2nd Ed., Proteome Inc., Beverly, MA
-
Garrels, J. I., Payne, W. E., and Hecht, R., Eds. (1997) The Yeast Proteome Handbook, 2nd Ed., p. 207, Proteome Inc., Beverly, MA
-
(1997)
The Yeast Proteome Handbook
, pp. 207
-
-
Garrels, J.I.1
Payne, W.E.2
Hecht, R.3
-
36
-
-
0041384025
-
Studies of ligand-induced site-specific phosphorylation of epidermal growth factor receptor
-
Guo, L., Kozlosky, C. J., Ericson, L. H., Daniel, T. O., Cerretti, D. P., and Johnson, R. S. (2003) Studies of ligand-induced site-specific phosphorylation of epidermal growth factor receptor. J. Am. Soc. Mass Spectrom. 14, 1002-1031
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 1002-1031
-
-
Guo, L.1
Kozlosky, C.J.2
Ericson, L.H.3
Daniel, T.O.4
Cerretti, D.P.5
Johnson, R.S.6
-
37
-
-
2342583505
-
An isotope labeling strategy for quantifying the degree of phosphorylation at multiple sites in proteins
-
Hegeman, A. D., Harms, A. C., Sussman, M. R., Bunner, A. E., and Harper, J. E. (2004) An isotope labeling strategy for quantifying the degree of phosphorylation at multiple sites in proteins. J. Am. Soc. Mass Spectrom. 15, 647-653
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, pp. 647-653
-
-
Hegeman, A.D.1
Harms, A.C.2
Sussman, M.R.3
Bunner, A.E.4
Harper, J.E.5
-
38
-
-
15344341157
-
Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS
-
Steen, H., Jebanathirajah, J. A., Springer, M., and Kirschner, M. W. (2005) Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS. Proc. Natl. Acad. Sci. U. S. A. 102, 3948-3953
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3948-3953
-
-
Steen, H.1
Jebanathirajah, J.A.2
Springer, M.3
Kirschner, M.W.4
-
39
-
-
0035830965
-
Multi-site phosphorylation of Pho4 by the cyclin-CDK Pho8O-Pho85 is semi-processive with site preference
-
Jeffery, D. A., Springer, M., King, D. S., and O'Shea, E. K. (2001) Multi-site phosphorylation of Pho4 by the cyclin-CDK Pho8O-Pho85 is semi-processive with site preference. J. Mol. Biol. 306, 997-1010
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 997-1010
-
-
Jeffery, D.A.1
Springer, M.2
King, D.S.3
O'Shea, E.K.4
-
40
-
-
0025617140
-
Appendix 5. Nomenclature for peptide fragment ions (positive ions)
-
in (McCloskey, J. A., ed) Academic Press, New York
-
Biemann, K. (1990) Appendix 5. Nomenclature for peptide fragment ions (positive ions), in Methods in Enzymology (McCloskey, J. A., ed) Vol. 193, pp. 886-887, Academic Press, New York
-
(1990)
Methods in Enzymology
, vol.193
, pp. 886-887
-
-
Biemann, K.1
-
41
-
-
0015948883
-
Three forms of the 5.8-S ribosomal RNA species in Saccharomyces cerevisiae
-
Rubin, G. M. (1974) Three forms of the 5.8-S ribosomal RNA species in Saccharomyces cerevisiae. Eur. J. Biochem. 41, 197-202
-
(1974)
Eur. J. Biochem.
, vol.41
, pp. 197-202
-
-
Rubin, G.M.1
|