메뉴 건너뛰기




Volumn 172, Issue 1, 2007, Pages 8-19

Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8

Author keywords

Genome evolution; LARDs; Non autonomous LTR retrotransposon; Oryza sativa; Rice

Indexed keywords

DERIVATIVES; GENES;

EID: 33751204477     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2006.07.008     Document Type: Article
Times cited : (10)

References (46)
  • 1
    • 0000822856 scopus 로고
    • The genetic organization of chromosomes
    • Thomas C.A. The genetic organization of chromosomes. Annu. Rev. Genet. 5 (1971) 237-256
    • (1971) Annu. Rev. Genet. , vol.5 , pp. 237-256
    • Thomas, C.A.1
  • 4
    • 0034332317 scopus 로고    scopus 로고
    • Molecular melodies in high and low C
    • Hartl D.L. Molecular melodies in high and low C. Nat. Rev. Genet. 1 2 (2000) 145-149
    • (2000) Nat. Rev. Genet. , vol.1 , Issue.2 , pp. 145-149
    • Hartl, D.L.1
  • 5
    • 0035058360 scopus 로고    scopus 로고
    • Evolution of genome size: new approaches to an old problem
    • Petrov D.A. Evolution of genome size: new approaches to an old problem. Trends Genet. 17 1 (2001) 23-28
    • (2001) Trends Genet. , vol.17 , Issue.1 , pp. 23-28
    • Petrov, D.A.1
  • 6
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: where genetics meets genomics
    • Feschotte C., Jianj N., and Wessler S.R. Plant transposable elements: where genetics meets genomics. Nat. Rev. 3 (2002) 329-341
    • (2002) Nat. Rev. , vol.3 , pp. 329-341
    • Feschotte, C.1    Jianj, N.2    Wessler, S.R.3
  • 7
    • 0027030863 scopus 로고
    • Nonautonomous transposable elements in prokaryotes and eukaryotes
    • Hartl D.L., Lozovskaya E.R., and Lawrence J.G. Nonautonomous transposable elements in prokaryotes and eukaryotes. Genetica 86 l-3 (1992) 47-53
    • (1992) Genetica , vol.86 , Issue.l-3 , pp. 47-53
    • Hartl, D.L.1    Lozovskaya, E.R.2    Lawrence, J.G.3
  • 8
    • 0026940433 scopus 로고
    • Tourist: a large family of small inverted repeat elements frequently associated with maize genes
    • Bureau T.E., and Wessler S.R. Tourist: a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4 10 (1994) 1283-1294
    • (1994) Plant Cell , vol.4 , Issue.10 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 9
    • 0036849412 scopus 로고    scopus 로고
    • LINEs mobilize SINEs in the eel through a shared 3′ sequence
    • Kajikawa M., and Okada N. LINEs mobilize SINEs in the eel through a shared 3′ sequence. Cell 111 3 (2002) 433-444
    • (2002) Cell , vol.111 , Issue.3 , pp. 433-444
    • Kajikawa, M.1    Okada, N.2
  • 10
    • 0346668134 scopus 로고    scopus 로고
    • Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome
    • Jiang N., Jordan I.K., and Wessler S.R. Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiol. 130 4 (2002) 1697-16975
    • (2002) Plant Physiol. , vol.130 , Issue.4 , pp. 1697-16975
    • Jiang, N.1    Jordan, I.K.2    Wessler, S.R.3
  • 11
    • 1942421723 scopus 로고    scopus 로고
    • Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes
    • Kalendar R., Vicient C.M., Peleg O., Anamthawat-Jonsson K., Bolshoy A., and Schulman A.H. Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes. Genetics 166 3 (2004) 1437-1450
    • (2004) Genetics , vol.166 , Issue.3 , pp. 1437-1450
    • Kalendar, R.1    Vicient, C.M.2    Peleg, O.3    Anamthawat-Jonsson, K.4    Bolshoy, A.5    Schulman, A.H.6
  • 12
    • 0142092446 scopus 로고    scopus 로고
    • Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse
    • Baust C., Gagnier L., Baillie G.J., Harris M.J., Juriloff D.M., and Mager D.L. Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse. J. Virol. 77 21 (Nov 2003) 11448-11458
    • (2003) J. Virol. , vol.77 , Issue.21 , pp. 11448-11458
    • Baust, C.1    Gagnier, L.2    Baillie, G.J.3    Harris, M.J.4    Juriloff, D.M.5    Mager, D.L.6
  • 13
    • 0035923510 scopus 로고    scopus 로고
    • Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
    • Witte C.P., Le Q.H., Bureau T., and Kumar A. Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes. Proc. Natl. Acad. Sci. U.S.A. 98 24 (2001) 13778-13783
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , Issue.24 , pp. 13778-13783
    • Witte, C.P.1    Le, Q.H.2    Bureau, T.3    Kumar, A.4
  • 14
    • 0000637348 scopus 로고    scopus 로고
    • Do plants have a one-way ticket to genomic obesity?
    • Bennetzen J.L., and Kellogg E.A. Do plants have a one-way ticket to genomic obesity?. Plant cell 9 (1997) 1509-1514
    • (1997) Plant cell , vol.9 , pp. 1509-1514
    • Bennetzen, J.L.1    Kellogg, E.A.2
  • 16
    • 23844543047 scopus 로고    scopus 로고
    • LTR-retrotransposons and flowering plant genome size: emergence of the increase/decrease model
    • Vitte C., and Panaud O. LTR-retrotransposons and flowering plant genome size: emergence of the increase/decrease model. Cytogenet. Genome Res. 110 1-4 (2005) 91-107
    • (2005) Cytogenet. Genome Res. , vol.110 , Issue.1-4 , pp. 91-107
    • Vitte, C.1    Panaud, O.2
  • 17
    • 0032710552 scopus 로고    scopus 로고
    • Genome rearrangements by nonlinear transposons in maize
    • Zhang J., and Peterson T. Genome rearrangements by nonlinear transposons in maize. Genetics 153 3 (1999) 1403-1410
    • (1999) Genetics , vol.153 , Issue.3 , pp. 1403-1410
    • Zhang, J.1    Peterson, T.2
  • 20
    • 0035573819 scopus 로고    scopus 로고
    • Potential role of transposable elements in the rapid reorganization of the Fusarium oxysporum genome
    • Daviere J.M., Langin T., and Daboussi M.J. Potential role of transposable elements in the rapid reorganization of the Fusarium oxysporum genome. Fungal Genet. Biol. 34 3 (2001) 177-192
    • (2001) Fungal Genet. Biol. , vol.34 , Issue.3 , pp. 177-192
    • Daviere, J.M.1    Langin, T.2    Daboussi, M.J.3
  • 21
    • 0029168410 scopus 로고
    • Transposable elements: possible catalysts of organismic evolution
    • McDonald J.F. Transposable elements: possible catalysts of organismic evolution. Trends Ecol. Evol. 10 3 (1995) 123-126
    • (1995) Trends Ecol. Evol. , vol.10 , Issue.3 , pp. 123-126
    • McDonald, J.F.1
  • 22
    • 0030860770 scopus 로고    scopus 로고
    • Transposable elements as sources of variation in animal and plants
    • Kidwell M.G., and Lisch D. Transposable elements as sources of variation in animal and plants. Proc. Natl. Acad. Sci. U.S.A. 94 (1997) 7704-7711
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 7704-7711
    • Kidwell, M.G.1    Lisch, D.2
  • 23
  • 24
    • 0029743043 scopus 로고    scopus 로고
    • A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
    • Bureau T.E., Ronald P.C., and Wessler S.R. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc. Natl. Acad. Sci. U.S.A. 93 16 (1996) 8524-8529
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , Issue.16 , pp. 8524-8529
    • Bureau, T.E.1    Ronald, P.C.2    Wessler, S.R.3
  • 26
    • 0030771475 scopus 로고    scopus 로고
    • RIRE1, a retrotransposon from wild rice Oryza australiensis
    • Noma K., Nakajima R., Ohtsubo H., and Ohtsubo E. RIRE1, a retrotransposon from wild rice Oryza australiensis. Genes Genet. Syst. 72 (1997) 131-140
    • (1997) Genes Genet. Syst. , vol.72 , pp. 131-140
    • Noma, K.1    Nakajima, R.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 27
    • 0032956461 scopus 로고    scopus 로고
    • Identification and characterization of novel retrotransposons of the gypsy type in rice
    • Kumekawa N., Ohtsubo H., Horiuchi T., and Ohtsubo E. Identification and characterization of novel retrotransposons of the gypsy type in rice. Mol. Gen. Genet. 260 6 (1999) 593-602
    • (1999) Mol. Gen. Genet. , vol.260 , Issue.6 , pp. 593-602
    • Kumekawa, N.1    Ohtsubo, H.2    Horiuchi, T.3    Ohtsubo, E.4
  • 28
    • 0033149858 scopus 로고    scopus 로고
    • RIRE2, a novel gypsy-type retrotransposon from rice
    • Ohtsubo H., Kumekawa N., and Ohtsubo E. RIRE2, a novel gypsy-type retrotransposon from rice. Genes Genet. Syst. 74 3 (1999) 83-91
    • (1999) Genes Genet. Syst. , vol.74 , Issue.3 , pp. 83-91
    • Ohtsubo, H.1    Kumekawa, N.2    Ohtsubo, E.3
  • 30
    • 0034084963 scopus 로고    scopus 로고
    • The complete sequence of 340 kb of DNA around the rice ADH1-ADH2 regions reveals interrupted colinearity with maize chromosome 4
    • Tarchini R., Biddle P., Wineland R., Tingey S., and Rafalski A. The complete sequence of 340 kb of DNA around the rice ADH1-ADH2 regions reveals interrupted colinearity with maize chromosome 4. Plant cell 12 (2000) 381-391
    • (2000) Plant cell , vol.12 , pp. 381-391
    • Tarchini, R.1    Biddle, P.2    Wineland, R.3    Tingey, S.4    Rafalski, A.5
  • 31
    • 0035031406 scopus 로고    scopus 로고
    • A new gypsy type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes
    • Kumekawa N., Ohmido N., Fukui K., Ohtsubo E., and Ohtsubo H. A new gypsy type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes. Mol. Genet. Genomics 265 3 (2001) 480-488
    • (2001) Mol. Genet. Genomics , vol.265 , Issue.3 , pp. 480-488
    • Kumekawa, N.1    Ohmido, N.2    Fukui, K.3    Ohtsubo, E.4    Ohtsubo, H.5
  • 32
    • 0035142211 scopus 로고    scopus 로고
    • Survey of transposable elements from rice genomic sequences
    • Turcotte K., Srinivasan S., and Bureau T. Survey of transposable elements from rice genomic sequences. Plant J. 25 2 (2001) 169-179
    • (2001) Plant J. , vol.25 , Issue.2 , pp. 169-179
    • Turcotte, K.1    Srinivasan, S.2    Bureau, T.3
  • 33
    • 0036383483 scopus 로고    scopus 로고
    • Characterization of transposable elements in the genome of rice (Oryza sativa L.) using representational difference analysis
    • Panaud O., Vitte C., Hivert J., Muszlak S., Talag J., Brar D., and Sarr A. Characterization of transposable elements in the genome of rice (Oryza sativa L.) using representational difference analysis. Mol. Gen. Genomics 268 (2002) 113-121
    • (2002) Mol. Gen. Genomics , vol.268 , pp. 113-121
    • Panaud, O.1    Vitte, C.2    Hivert, J.3    Muszlak, S.4    Talag, J.5    Brar, D.6    Sarr, A.7
  • 34
    • 0037072652 scopus 로고    scopus 로고
    • Long terminal repeat retrotransposons of Oryza sativa
    • Me Carthy E.M., Liu J., Lizhi G., and McDonald J.F. Long terminal repeat retrotransposons of Oryza sativa. Genome Biol 3 10 (2002) 51-53
    • (2002) Genome Biol , vol.3 , Issue.10 , pp. 51-53
    • Me Carthy, E.M.1    Liu, J.2    Lizhi, G.3    McDonald, J.F.4
  • 35
    • 0037387430 scopus 로고    scopus 로고
    • Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L
    • Vitte C., and Panaud O. Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L. Mol. Biol. Evol. 20 4 (2003) 528-540
    • (2003) Mol. Biol. Evol. , vol.20 , Issue.4 , pp. 528-540
    • Vitte, C.1    Panaud, O.2
  • 36
    • 13244264889 scopus 로고    scopus 로고
    • Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.)
    • Vitte C., Ishii T., Lamy F., Brar D., and Panaud O. Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.). Mol. Gen. Genomics 272 (2004) 504-511
    • (2004) Mol. Gen. Genomics , vol.272 , pp. 504-511
    • Vitte, C.1    Ishii, T.2    Lamy, F.3    Brar, D.4    Panaud, O.5
  • 37
    • 0033852426 scopus 로고    scopus 로고
    • A contiguous 66-kb Barley DNA Sequence provides evidence for reversible genome expansion
    • Shirasu K., Schulman A.H., Lahaye T., and Schulze-Lefert P. A contiguous 66-kb Barley DNA Sequence provides evidence for reversible genome expansion. Genome Res. 10 (2000) 908-915
    • (2000) Genome Res. , vol.10 , pp. 908-915
    • Shirasu, K.1    Schulman, A.H.2    Lahaye, T.3    Schulze-Lefert, P.4
  • 38
    • 0346120025 scopus 로고    scopus 로고
    • Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes
    • Quesneville H., Nouaud D., and Anxolabehere D. Detection of new transposable element families in Drosophila melanogaster and Anopheles gambiae genomes. J. Mol. Evol. 57 Suppl. l (2003) S50-S59
    • (2003) J. Mol. Evol. , vol.57 , Issue.SUPPL. l
    • Quesneville, H.1    Nouaud, D.2    Anxolabehere, D.3
  • 39
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • Ma J., and Bennetzen J.L. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. U.S.A. 101 34 (2004) 12404-12410
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , Issue.34 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 40
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak E., Jeanmougin F., and Higgins D.G. The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, E.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WYN: two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WYN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 (1996) 543-548
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 42
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro H.N. (Ed), Academic Press
    • Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism (1969), Academic Press 21-132
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 43
    • 0028304908 scopus 로고
    • On global sequence alignment
    • Huang W. On global sequence alignment. Comput. Appl. Biosci. 10 3 (1994) 227-235
    • (1994) Comput. Appl. Biosci. , vol.10 , Issue.3 , pp. 227-235
    • Huang, W.1
  • 44
    • 0029812835 scopus 로고    scopus 로고
    • Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gen Adh parallel rate differences at the plastid gene rbcL
    • Gaut B.S., Morton B.R., McCaig B.C., and Clegg M.T. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gen Adh parallel rate differences at the plastid gene rbcL. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 10274-10279
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 10274-10279
    • Gaut, B.S.1    Morton, B.R.2    McCaig, B.C.3    Clegg, M.T.4
  • 45
    • 33751236726 scopus 로고    scopus 로고
    • The R software package, http://www.r-project.org/
  • 46
    • 16344393155 scopus 로고    scopus 로고
    • Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice
    • Nagaki K., Neumann P., Zhang D., Ouyang S., Buell C.R., Cheng Z., and Jiang J. Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice. Mol. Biol. Evol. 22 4 (2005) 845-855
    • (2005) Mol. Biol. Evol. , vol.22 , Issue.4 , pp. 845-855
    • Nagaki, K.1    Neumann, P.2    Zhang, D.3    Ouyang, S.4    Buell, C.R.5    Cheng, Z.6    Jiang, J.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.