Crl facilitates RNA polymerase holoenzyme formation

Journal of Bacteriology

Volumn 188, Issue 22, 2006, Pages 7966-7970

  Gaal, Tamas ^a   Mandel, Mark J ^a,b   Silhavy, Thomas J ^b   Gourse, Richard L ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; HOLOENZYME; RNA POLYMERASE; SIGMA FACTOR; SIGMA FACTOR 32; SIGMA FACTOR 70; SIGMA FACTOR RPOS; TRANSCRIPTION FACTOR CRL; UNCLASSIFIED DRUG;

ARTICLE; CONCENTRATION RESPONSE; CONTROLLED STUDY; ENZYME SYNTHESIS; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DNA INTERACTION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

ADHESINS, BACTERIAL; BACTERIAL PROTEINS; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; HOLOENZYMES; SIGMA FACTOR; TRANSCRIPTION, GENETIC;

ESCHERICHIA COLI;

EID: 33751096730     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01266-06     Document Type: Article

References (30)

1. Arnqvist, A., A. Olsen, J. Pfeifer, D. G. Russell, and S. Normark. 1992. The CrI protein activates cryptic genes for curli formation and fibronectin binding in Escherichia coli HB101. Mol. Microbiol. 6:2443-2452.
2. Barker, M. M., T. Gaal, and R. L. Gourse. 2001. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. J. Mol. Biol. 305:689-702.
3. Barker, M. M., T. Gaal, C. A. Josaitis, and R. L. Gourse. 2001. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305:673-688.
4. 54-dependent transcription. Mol. Microbiol. 60:749-764.
5. Bougdour, A., C. Lelong, and J. Geiselmann. 2004. Crl, a low temperature-induced protein in Escherichia coli that binds directly to the stationary phase sigma subunit of RNA polymerase. J. Biol. Chem. 279:19540-19550.
6. Burgess, R. R., and J. J. Jendrisak. 1975. A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry 14:4634-4638.
7. E, by guanosine 3′,5′-bispyrophosphate (ppGpp). J. Bacteriol. 188:4627-4634.
8. Dove, S. L., S. A. Darst, and A. Hochschild. 2003. Region 4 of sigma as a target for transcription regulation. Mol. Microbiol. 48:863-874.
9. Farewell, A., K. Kvint, and T. Nystrom. 1998. Negative regulation by RpoS: a case of sigma factor competition. Mol. Microbiol. 29:1039-1051.
10. S RNA polymerase. Mol. Microbiol. 42:939-954.
11. Gourse, R. L., W. Ross, and S. T. Rutherford. 2006. General pathway for turning on promoters transcribed by RNA polymerases containing alternative σ factors. J. Bacteriol. 188:4589-4591.
12. Grigorova, I. L., N. J. Phleger, V. K. Mutalik, and C. A. Gross. 2006. Insights into transcriptional regulation and σ competition from an equilibrium model of RNA polymerase binding to DNA. Proc. Natl. Acad. Sci. USA 103:5332-5337.
13. Hammar, M., Z. Bian, and S. Normark. 1996. Nucleator-dependent intercellular assembly of adhesive curli organelles in Escherichia coli. Proc. Natl. Acad. Sci. USA 93:6562-6566.
14. Haugen, S. P., M. B. Berkmen, W. Ross, T. Gaal, C. Ward, and R. L. Gourse. 2006. rRNA promoter regulation by nonoptimal binding of σ region 1.2: an additional recognition element for RNA polymerase. Cell 125:1069-1082.
15. Helmann, J. D. 1999. Anti-sigma factors. Curr. Opin. Microbiol. 2:135-141.
16. S (RpoS) subunit of RNA polymerase. Microbiol. Mol. Biol. Rev. 66:373-395.
17. 38. J. Bacteriol. 177:6832-6835.
18. Jishage, M., and A. Ishihama. 1998. A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase. Proc. Natl. Acad. Sci. USA 95:4953-4958.
19. Jishage, M., and A. Ishihama. 1999. Transcriptional organization and in vivo role of the Escherichia coli rsd gene, encoding the regulator of RNA polymerase sigma D. J. Bacteriol. 181:3768-3776.
20. Jishage, M., K. Kvint, V. Shingler, and T. Nystrom. 2002. Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev. 16:1260-1270.
21. Lange, R., and R. Hengge-Aronis. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol. Microbiol. 5:49-59.
22. 32) in vitro. J. Bacteriol. 175:661-668.
23. Nystrom, T. 2004. Stationary-phase physiology. Annu. Rev. Microbiol. 58:161-181.
24. Olsén, A., A. Jonsson, and S. Normark. 1989. Fibronectin binding mediated by a novel class of surface organelles on Escherichia coli. Nature 338:652-655.
25. Paul, B. J., M. M. Barker, W. Ross, D. A. Schneider, C. Webb, J. W. Foster, and R. L. Gourse. 2004. DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118:311-322.
26. Paul, B. J., M. B. Berkmen, and R. L. Course. 2005. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc. Natl. Acad. Sci. USA 102:7823-7828.
27. Peterson, C. N., M. J. Mandel, and T. J. Silhavy. 2005. Escherichia coli starvation diets: essential nutrients weigh in distinctly. J. Bacteriol. 187:7549-7553.
28. Pratt, L. A., and T. J. Silhavy. 1998. Crl stimulates RpoS activity during stationary phase. Mol. Microbiol. 29:1225-1236.
29. Robbe-Saule, V., V. Jaumouillé, M. C. Prévost, S. Guadagnini, C. Talhouarne, H. Mathout, A. Kolb, and F. Norel. 2006. Crl activates transcription initiation of RpoS-regulated genes involved in the multicellular behavior of Salmonella enterica serovar Typhimurium. J. Bacteriol. 188:3983-3994.
30. Wassarman, K. M., and G. Storz. 2000. 6S RNA regulates E. coli RNA polymerase activity. Cell 101:613-623.