-
1
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
Bai Y., Milne J.S., Mayne L., Englander S.W. Primary structure effects on peptide group hydrogen exchange. Proteins. 17:1993;75-86.
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
2
-
-
0032502332
-
Role of the omega-loop in the activity, substrate specificity, and structure of class a beta-lactamase
-
Banerjee S., Pieper U., Kapadia G., Pannell L.K., Herzberg O. Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. Biochemistry. 37:1998;3286-3296.
-
(1998)
Biochemistry
, vol.37
, pp. 3286-3296
-
-
Banerjee, S.1
Pieper, U.2
Kapadia, G.3
Pannell, L.K.4
Herzberg, O.5
-
3
-
-
0028026907
-
A novel protein-tyrosine phosphatase with homology to both the cytoskeletal proteins of the band 4.1 family and junction-associated guanylate kinases
-
Banville D., Ahmad S., Stocco R., Shen S.H. A novel protein-tyrosine phosphatase with homology to both the cytoskeletal proteins of the band 4.1 family and junction-associated guanylate kinases. J. Biol. Chem. 269:1994;22320-22327.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 22320-22327
-
-
Banville, D.1
Ahmad, S.2
Stocco, R.3
Shen, S.H.4
-
4
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels C.H., Xia T.-H., Billeter M., Güntert P., Wüthrich K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR. 6:1995;1-10.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.H.1
Xia, T.-H.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
5
-
-
0037449799
-
Novel mode of ligand recognition by the Erbin PDZ domain
-
Birrane G., Chung J., Ladias J.A. Novel mode of ligand recognition by the Erbin PDZ domain. J. Biol. Chem. 278:2003;1399-1402.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 1399-1402
-
-
Birrane, G.1
Chung, J.2
Ladias, J.A.3
-
7
-
-
0032528033
-
Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
-
Cornilescu G., Marquardt J.L., Ottiger M., Bax A. Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J. Am. Chem. Soc. 120:1998;6836-6837.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6836-6837
-
-
Cornilescu, G.1
Marquardt, J.L.2
Ottiger, M.3
Bax, A.4
-
8
-
-
0030778437
-
No evidence for involvement of mouse protein-tyrosine phosphatase-BAS-like Fas-associated phosphatase-1 in Fas-mediated apoptosis
-
Cuppen E., Nagata S., Wieringa B., Hendriks W. No evidence for involvement of mouse protein-tyrosine phosphatase-BAS-like Fas-associated phosphatase-1 in Fas-mediated apoptosis. J. Biol. Chem. 272:1997;30215-30220.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 30215-30220
-
-
Cuppen, E.1
Nagata, S.2
Wieringa, B.3
Hendriks, W.4
-
9
-
-
0031916105
-
PDZ motifs in PTP-BL and RIL bind to internal protein segments in the LIM domain protein RIL
-
Cuppen E., Gerrits H., Pepers B., Wieringa B., Hendriks W. PDZ motifs in PTP-BL and RIL bind to internal protein segments in the LIM domain protein RIL. Mol. Biol. Cell. 9:1998;671-683.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 671-683
-
-
Cuppen, E.1
Gerrits, H.2
Pepers, B.3
Wieringa, B.4
Hendriks, W.5
-
10
-
-
0032831897
-
Identification and molecular characterization of BP75, a novel bromodomain-containing protein
-
a
-
Cuppen E., van Ham M., Pepers B., Wieringa B., Hendriks W. Identification and molecular characterization of BP75, a novel bromodomain-containing protein. FEBS Lett. 459:1999;291-298. a.
-
(1999)
FEBS Lett.
, vol.459
, pp. 291-298
-
-
Cuppen, E.1
Van Ham, M.2
Pepers, B.3
Wieringa, B.4
Hendriks, W.5
-
11
-
-
0032705250
-
A FERM domain governs apical confinement of PTP-BL in epithelial cells
-
b
-
Cuppen E., Wijers M., Schepens J., Fransen J., Wieringa B., Hendriks W. A FERM domain governs apical confinement of PTP-BL in epithelial cells. J. Cell Sci. 112:1999;3299-3308. b.
-
(1999)
J. Cell Sci.
, vol.112
, pp. 3299-3308
-
-
Cuppen, E.1
Wijers, M.2
Schepens, J.3
Fransen, J.4
Wieringa, B.5
Hendriks, W.6
-
12
-
-
0034010331
-
The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL
-
Cuppen E., van Ham M., Wansink D.G., de Leeuw A., Wieringa B., Hendriks W. The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL. Eur. J. Cell Biol. 79:2000;283-293.
-
(2000)
Eur. J. Cell Biol.
, vol.79
, pp. 283-293
-
-
Cuppen, E.1
Van Ham, M.2
Wansink, D.G.3
De Leeuw, A.4
Wieringa, B.5
Hendriks, W.6
-
13
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F., Grzesiek S., Vuister G.W., Zhu G., Pfeifer J., Bax A. NMRPipe. a multidimensional spectral processing system based on UNIX pipes J. Biomol. NMR. 6:1995;277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
14
-
-
0034048847
-
Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data
-
Dosset P., Hus J.C., Blackledge M., Marion D. Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data. J. Biomol. NMR. 16:2000;23-28.
-
(2000)
J. Biomol. NMR
, vol.16
, pp. 23-28
-
-
Dosset, P.1
Hus, J.C.2
Blackledge, M.3
Marion, D.4
-
15
-
-
0034884233
-
A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings
-
Dosset P., Hus J.C., Marion D., Blackledge M. A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings. J. Biomol. NMR. 20:2001;223-231.
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 223-231
-
-
Dosset, P.1
Hus, J.C.2
Marion, D.3
Blackledge, M.4
-
16
-
-
0032453619
-
Effect of peptide binding on amide proton exchange rates in the PDZ2 domain from human phosphatase hPTP1E
-
Ekiel I., Banville D., Shen S.H., Gehring K. Effect of peptide binding on amide proton exchange rates in the PDZ2 domain from human phosphatase hPTP1E. Biochem. Cell Biol. 76:1998;334-340.
-
(1998)
Biochem. Cell Biol.
, vol.76
, pp. 334-340
-
-
Ekiel, I.1
Banville, D.2
Shen, S.H.3
Gehring, K.4
-
17
-
-
0034632672
-
The Adenomatous Polyposis Coli-protein (APC) interacts with the protein tyrosine phosphatase PTP-BL via an alternatively spliced PDZ domain
-
Erdmann K.S., Kuhlmann J., Lessmann V., Herrmann L., Eulenburg V., Muller O., Heumann R. The Adenomatous Polyposis Coli-protein (APC) interacts with the protein tyrosine phosphatase PTP-BL via an alternatively spliced PDZ domain. Oncogene. 19:2000;3894-3901.
-
(2000)
Oncogene
, vol.19
, pp. 3894-3901
-
-
Erdmann, K.S.1
Kuhlmann, J.2
Lessmann, V.3
Herrmann, L.4
Eulenburg, V.5
Muller, O.6
Heumann, R.7
-
18
-
-
0037174873
-
PDZ7 of glutamate receptor interacting protein binds to its target via a novel hydrophobic surface area
-
Feng W., Fan J.S., Jiang M., Shi Y.W., Zhang M. PDZ7 of glutamate receptor interacting protein binds to its target via a novel hydrophobic surface area. J. Biol. Chem. 277:2002;41140-41146.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 41140-41146
-
-
Feng, W.1
Fan, J.S.2
Jiang, M.3
Shi, Y.W.4
Zhang, M.5
-
19
-
-
0035843906
-
The protein kinase C-related kinase PRK2 interacts with the protein tyrosine phosphatase PTP-BL via a novel PDZ domain binding motif
-
Gross C., Heumann R., Erdmann K.S. The protein kinase C-related kinase PRK2 interacts with the protein tyrosine phosphatase PTP-BL via a novel PDZ domain binding motif. FEBS Lett. 496:2001;101-104.
-
(2001)
FEBS Lett.
, vol.496
, pp. 101-104
-
-
Gross, C.1
Heumann, R.2
Erdmann, K.S.3
-
20
-
-
12244288351
-
The protein tyrosine phosphatase PTP-BL associates with the midbody and is involved in the regulation of cytokinesis
-
Herrmann L., Dittmar T., Erdmann K.S. The protein tyrosine phosphatase PTP-BL associates with the midbody and is involved in the regulation of cytokinesis. Mol. Biol. Cell. 14:2003;230-240.
-
(2003)
Mol. Biol. Cell
, vol.14
, pp. 230-240
-
-
Herrmann, L.1
Dittmar, T.2
Erdmann, K.S.3
-
21
-
-
0032876680
-
Protein conformational stabilities can be determined from hydrogen exchange rates
-
Huyghues-Despointes B.M., Scholtz J.M., Pace C.N. Protein conformational stabilities can be determined from hydrogen exchange rates. Nat. Struct. Biol. 6:1999;910-912.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 910-912
-
-
Huyghues-Despointes, B.M.1
Scholtz, J.M.2
Pace, C.N.3
-
22
-
-
0037387358
-
PDZ tandem of human syntenin. Crystal structure and functional properties
-
Kang B.S., Cooper D.R., Jelen F., Devedjiev Y., Derewenda U., Dauter Z., Otlewski J., Derewenda Z.S. PDZ tandem of human syntenin. Crystal structure and functional properties. Structure. 11:2003;459-468.
-
(2003)
Structure
, vol.11
, pp. 459-468
-
-
Kang, B.S.1
Cooper, D.R.2
Jelen, F.3
Devedjiev, Y.4
Derewenda, U.5
Dauter, Z.6
Otlewski, J.7
Derewenda, Z.S.8
-
23
-
-
0036301446
-
Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions
-
Kozlov G., Banville D., Gehring K., Ekiel I. Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions. J. Mol. Biol. 320:2002;813-820.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 813-820
-
-
Kozlov, G.1
Banville, D.2
Gehring, K.3
Ekiel, I.4
-
24
-
-
0030339738
-
Aqua and procheck-nmr: Programs for checking the quality of protein structures solved by nmr
-
Laskowski R.A., Rullmann J.A., MacArthur M.W., Kaptein R., Thornton J.M. Aqua and procheck-nmr. programs for checking the quality of protein structures solved by nmr J. Biomol. NMR. 8:1996;477-486.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
25
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang J., Edelsbrunner H., Woodward C. Anatomy of protein pockets and cavities. measurement of binding site geometry and implications for ligand design Protein Sci. 7:1998;1884-1897.
-
(1998)
Protein Sci.
, vol.7
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
26
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell A.D., Bashford D., Bellott M., Dunbrack R.L., Evanseck J.D., Field M.J., Fischer S., Gao J., Guo H., Ha S.et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:1998;3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
-
27
-
-
0033555678
-
Association of protein-tyrosine phosphatase PTP-BAS with the transcription-factor-inhibitory protein IkappaBalpha through interaction between the PDZ1 domain and ankyrin repeats
-
Maekawa K., Imagawa N., Naito A., Harada S., Yoshie O., Takagi S. Association of protein-tyrosine phosphatase PTP-BAS with the transcription-factor-inhibitory protein IkappaBalpha through interaction between the PDZ1 domain and ankyrin repeats. Biochem. J. 337:1999;179-184.
-
(1999)
Biochem. J.
, vol.337
, pp. 179-184
-
-
Maekawa, K.1
Imagawa, N.2
Naito, A.3
Harada, S.4
Yoshie, O.5
Takagi, S.6
-
28
-
-
0028941877
-
Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
-
Mandel A.M., Akke M., Palmer A.G. Backbone dynamics of Escherichia coli ribonuclease HI. correlations with structure and function in an active enzyme J. Mol. Biol. 246:1995;144-163.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 144-163
-
-
Mandel, A.M.1
Akke, M.2
Palmer, A.G.3
-
29
-
-
0031976414
-
Solution structure and dynamics of a designed monomeric variant of the lambda Cro repressor
-
Mossing M.C. Solution structure and dynamics of a designed monomeric variant of the lambda Cro repressor. Protein Sci. 7:1998;983-993.
-
(1998)
Protein Sci.
, vol.7
, pp. 983-993
-
-
Mossing, M.C.1
-
30
-
-
0141508959
-
Quantitative evaluation of experimental NMR restraints
-
Nabuurs S.B., Spronk C.A.E.M., Krieger E., Maassen H., Vriend G., Vuister G.W. Quantitative evaluation of experimental NMR restraints. J. Am. Chem. Soc. 125:2003;12026-12034.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 12026-12034
-
-
Nabuurs, S.B.1
Spronk, C.A.E.M.2
Krieger, E.3
Maassen, H.4
Vriend, G.5
Vuister, G.W.6
-
31
-
-
0037009284
-
Investigation of the PDZ domain ligand binding site using chemically modified peptides
-
Novak K.A., Fujii N., Guy R.K. Investigation of the PDZ domain ligand binding site using chemically modified peptides. Bioorg. Med. Chem. Lett. 12:2002;2471-2474.
-
(2002)
Bioorg. Med. Chem. Lett.
, vol.12
, pp. 2471-2474
-
-
Novak, K.A.1
Fujii, N.2
Guy, R.K.3
-
32
-
-
0036241054
-
EphrinB phosphorylation and reverse signaling: Regulation by Src kinases and PTP-BL phosphatase
-
Palmer A., Zimmer M., Erdmann K.S., Eulenburg V., Porthin A., Heumann R., Deutsch U., Klein R. EphrinB phosphorylation and reverse signaling. regulation by Src kinases and PTP-BL phosphatase Mol. Cell. 9:2002;725-737.
-
(2002)
Mol. Cell
, vol.9
, pp. 725-737
-
-
Palmer, A.1
Zimmer, M.2
Erdmann, K.S.3
Eulenburg, V.4
Porthin, A.5
Heumann, R.6
Deutsch, U.7
Klein, R.8
-
33
-
-
0026566796
-
Analysis of insertions/deletions in protein structures
-
Pascarella S., Argos P. Analysis of insertions/deletions in protein structures. J. Mol. Biol. 224:1992;461-471.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 461-471
-
-
Pascarella, S.1
Argos, P.2
-
34
-
-
0037474545
-
Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase
-
Ramasubbu N., Ragunath C., Mishra P.J. Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase. J. Mol. Biol. 325:2003;1061-1076.
-
(2003)
J. Mol. Biol.
, vol.325
, pp. 1061-1076
-
-
Ramasubbu, N.1
Ragunath, C.2
Mishra, P.J.3
-
35
-
-
0028003644
-
Cloning and characterization of PTPL1, a protein tyrosine phosphatase with similarities to cytoskeletal-associated proteins
-
Saras J., Claesson-Welsh L., Heldin C.H., Gonez L.J. Cloning and characterization of PTPL1, a protein tyrosine phosphatase with similarities to cytoskeletal-associated proteins. J. Biol. Chem. 269:1994;24082-24089.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 24082-24089
-
-
Saras, J.1
Claesson-Welsh, L.2
Heldin, C.H.3
Gonez, L.J.4
-
36
-
-
0030763619
-
A novel GTPase-activating protein for Rho interacts with a PDZ domain of the protein-tyrosine phosphatase PTPL1
-
Saras J., Franzen P., Aspenstrom P., Hellman U., Gonez L.J., Heldin C.H. A novel GTPase-activating protein for Rho interacts with a PDZ domain of the protein-tyrosine phosphatase PTPL1. J. Biol. Chem. 272:1997;24333-24338.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 24333-24338
-
-
Saras, J.1
Franzen, P.2
Aspenstrom, P.3
Hellman, U.4
Gonez, L.J.5
Heldin, C.H.6
-
37
-
-
0029066512
-
FAP-1: A protein tyrosine phosphatase that associates with fas
-
Sato T., Irie S., Kitada S., Reed J.C. FAP-1. a protein tyrosine phosphatase that associates with fas Science. 268:1995;411-415.
-
(1995)
Science
, vol.268
, pp. 411-415
-
-
Sato, T.1
Irie, S.2
Kitada, S.3
Reed, J.C.4
-
38
-
-
0036219167
-
Improving the quality of protein structures determined by NMR spectroscopy
-
Spronk C.A., Linge J.P., Hilbers C.W., Vuister G.W. Improving the quality of protein structures determined by NMR spectroscopy. J. Biomol. NMR. 22:2002;281-289.
-
(2002)
J. Biomol. NMR
, vol.22
, pp. 281-289
-
-
Spronk, C.A.1
Linge, J.P.2
Hilbers, C.W.3
Vuister, G.W.4
-
39
-
-
0037070149
-
PDZ domains: Troubles in classification
-
Vaccaro P., Dente L. PDZ domains. troubles in classification FEBS Lett. 512:2002;345-349.
-
(2002)
FEBS Lett.
, vol.512
, pp. 345-349
-
-
Vaccaro, P.1
Dente, L.2
-
41
-
-
0038714883
-
Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL
-
van Ham M., Croes H., Schepens J., Fransen J., Wieringa B., Hendriks W. Cloning and characterization of mCRIP2, a mouse LIM-only protein that interacts with PDZ domain IV of PTP-BL. Genomics. 8:2003;631-644.
-
(2003)
Genomics
, vol.8
, pp. 631-644
-
-
Van Ham, M.1
Croes, H.2
Schepens, J.3
Fransen, J.4
Wieringa, B.5
Hendriks, W.6
-
42
-
-
0030462974
-
Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme
-
Vetter I.R., Baase W.A., Heinz D.W., Xiong J.P., Snow S., Matthews B.W. Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme. Protein Sci. 5:1996;2399-2415.
-
(1996)
Protein Sci.
, vol.5
, pp. 2399-2415
-
-
Vetter, I.R.1
Baase, W.A.2
Heinz, D.W.3
Xiong, J.P.4
Snow, S.5
Matthews, B.W.6
-
43
-
-
0025398721
-
What if: A molecular modeling and drug design program
-
, 29
-
Vriend G. What if. a molecular modeling and drug design program J. Mol. Graph. 8:1990;52-56. , 29.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
44
-
-
0036300569
-
Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL
-
Walma T., Spronk C.A., Tessari M., Aelen J., Schepens J., Hendriks W., Vuister G.W. Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. J. Mol. Biol. 316:2002;1101-1110.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 1101-1110
-
-
Walma, T.1
Spronk, C.A.2
Tessari, M.3
Aelen, J.4
Schepens, J.5
Hendriks, W.6
Vuister, G.W.7
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